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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF VIBH, AN NRPS CONDENSATION ENZYME
Keywords NONRIBOSOMAL PEPTIDE SYNTHETASE, NRPS CONDENSATION DOMAIN, AMIDE SYNTHASE, VIBRIOBACTIN, BIOSYNTHETIC PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1L5A     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AMIDE SYNTHASE  A 424 3386 0
2  Protein   AMIDE SYNTHASE  B 424 3376 0
3  Protein   AMIDE SYNTHASE  C 424 3356 0
4 Water     194 0 194
total       1466 10118 194
Proteins
Unit 1 MET1 LEU2 LEU3 ALA4 GLN5 LYS6 PRO7 PHE8 TRP9 GLN10 ARG11 HIS12 LEU13 ALA14 TYR15 PRO16 HIS17 ILE18 ASN19 LEU20 ASP21 THR22 VAL23 ALA24 HIS25 SER26 LEU27 ARG28 LEU29 THR30 GLY31 PRO32 LEU33 ASP34 THR35 THR36 LEU37 LEU38 LEU39 ARG40 ALA41 LEU42 HIS43 LEU44 THR45 VAL46 SER47 GLU48 ILE49 ASP50 LEU51 PHE52 ARG53 ALA54 ARG55 PHE56 SER57 ALA58 GLN59 GLY60 GLU61 LEU62 TYR63 TRP64 HIS65 PRO66 PHE67 SER68 PRO69 PRO70 ILE71 ASP72 TYR73 GLN74 ASP75 LEU76 SER77 ILE78 HIS79 LEU80 GLU81 ALA82 GLU83 PRO84 LEU85 ALA86 TRP87 ARG88 GLN89 ILE90 GLU91 GLN92 ASP93 LEU94 GLN95 ARG96 SER97 SER98 THR99 LEU100 ILE101 ASP102 ALA103 PRO104 ILE105 THR106 SER107 HIS108 GLN109 VAL110 TYR111 ARG112 LEU113 SER114 HIS115 SER116 GLU117 HIS118 LEU119 ILE120 TYR121 THR122 ARG123 ALA124 HIS125 HIS126 ILE127 VAL128 LEU129 ASP130 GLY131 TYR132 GLY133 MET134 MET135 LEU136 PHE137 GLU138 GLN139 ARG140 LEU141 SER142 GLN143 HIS144 TYR145 GLN146 SER147 LEU148 LEU149 SER150 GLY151 GLN152 THR153 PRO154 THR155 ALA156 ALA157 PHE158 LYS159 PRO160 TYR161 GLN162 SER163 TYR164 LEU165 GLU166 GLU167 GLU168 ALA169 ALA170 TYR171 LEU172 THR173 SER174 HIS175 ARG176 TYR177 TRP178 GLN179 ASP180 LYS181 GLN182 PHE183 TRP184 GLN185 GLY186 TYR187 LEU188 ARG189 GLU190 ALA191 PRO192 ASP193 LEU194 THR195 LEU196 THR197 SER198 ALA199 THR200 TYR201 ASP202 PRO203 GLN204 LEU205 SER206 HIS207 ALA208 VAL209 SER210 LEU211 SER212 TYR213 THR214 LEU215 ASN216 SER217 GLN218 LEU219 ASN220 HIS221 LEU222 LEU223 LEU224 LYS225 LEU226 ALA227 ASN228 ALA229 ASN230 GLN231 ILE232 GLY233 TRP234 PRO235 ASP236 ALA237 LEU238 VAL239 ALA240 LEU241 CYS242 ALA243 LEU244 TYR245 LEU246 GLU247 SER248 ALA249 GLU250 PRO251 ASP252 ALA253 PRO254 TRP255 LEU256 TRP257 LEU258 PRO259 PHE260 MET261 ASN262 ARG263 TRP264 GLY265 SER266 VAL267 ALA268 ALA269 ASN270 VAL271 PRO272 GLY273 LEU274 MET275 VAL276 ASN277 SER278 LEU279 PRO280 LEU281 LEU282 ARG283 LEU284 SER285 ALA286 GLN287 GLN288 THR289 SER290 LEU291 GLY292 ASN293 TYR294 LEU295 LYS296 GLN297 SER298 GLY299 GLN300 ALA301 ILE302 ARG303 SER304 LEU305 TYR306 LEU307 HIS308 GLY309 ARG310 TYR311 ARG312 ILE313 GLU314 GLN315 ILE316 GLU317 GLN318 ASP319 GLN320 GLY321 LEU322 ASN323 ALA324 GLU325 GLN326 SER327 TYR328 PHE329 MET330 SER331 PRO332 PHE333 ILE334 ASN335 ILE336 LEU337 PRO338 PHE339 GLU340 SER341 PRO342 HIS343 PHE344 ALA345 ASP346 CYS347 GLN348 THR349 GLU350 LEU351 LYS352 VAL353 LEU354 ALA355 SER356 GLY357 SER358 ALA359 GLU360 GLY361 ILE362 ASN363 PHE364 THR365 PHE366 ARG367 GLY368 SER369 PRO370 GLN371 HIS372 GLU373 LEU374 CYS375 LEU376 ASP377 ILE378 THR379 ALA380 ASP381 LEU382 ALA383 SER384 TYR385 PRO386 GLN387 SER388 HIS389 TRP390 GLN391 SER392 HIS393 CYS394 GLU395 ARG396 PHE397 PRO398 ARG399 PHE400 PHE401 GLU402 GLN403 LEU404 LEU405 ALA406 ARG407 PHE408 GLN409 GLN410 VAL411 GLU412 GLN413 ASP414 VAL415 ALA416 ARG417 LEU418 LEU419 ALA420 GLU421 PRO422 ALA423 ALA424
Unit 2 MET1 LEU2 LEU3 ALA4 GLN5 LYS6 PRO7 PHE8 TRP9 GLN10 ARG11 HIS12 LEU13 ALA14 TYR15 PRO16 HIS17 ILE18 ASN19 LEU20 ASP21 THR22 VAL23 ALA24 HIS25 SER26 LEU27 ARG28 LEU29 THR30 GLY31 PRO32 LEU33 ASP34 THR35 THR36 LEU37 LEU38 LEU39 ARG40 ALA41 LEU42 HIS43 LEU44 THR45 VAL46 SER47 GLU48 ILE49 ASP50 LEU51 PHE52 ARG53 ALA54 ARG55 PHE56 SER57 ALA58 GLN59 GLY60 GLU61 LEU62 TYR63 TRP64 HIS65 PRO66 PHE67 SER68 PRO69 PRO70 ILE71 ASP72 TYR73 GLN74 ASP75 LEU76 SER77 ILE78 HIS79 LEU80 GLU81 ALA82 GLU83 PRO84 LEU85 ALA86 TRP87 ARG88 GLN89 ILE90 GLU91 GLN92 ASP93 LEU94 GLN95 ARG96 SER97 SER98 THR99 LEU100 ILE101 ASP102 ALA103 PRO104 ILE105 THR106 SER107 HIS108 GLN109 VAL110 TYR111 ARG112 LEU113 SER114 HIS115 SER116 GLU117 HIS118 LEU119 ILE120 TYR121 THR122 ARG123 ALA124 HIS125 HIS126 ILE127 VAL128 LEU129 ASP130 GLY131 TYR132 GLY133 MET134 MET135 LEU136 PHE137 GLU138 GLN139 ARG140 LEU141 SER142 GLN143 HIS144 TYR145 GLN146 SER147 LEU148 LEU149 SER150 GLY151 GLN152 THR153 PRO154 THR155 ALA156 ALA157 PHE158 LYS159 PRO160 TYR161 GLN162 SER163 TYR164 LEU165 GLU166 GLU167 GLU168 ALA169 ALA170 TYR171 LEU172 THR173 SER174 HIS175 ARG176 TYR177 TRP178 GLN179 ASP180 LYS181 GLN182 PHE183 TRP184 GLN185 GLY186 TYR187 LEU188 ARG189 GLU190 ALA191 PRO192 ASP193 LEU194 THR195 LEU196 THR197 SER198 ALA199 THR200 TYR201 ASP202 PRO203 GLN204 LEU205 SER206 HIS207 ALA208 VAL209 SER210 LEU211 SER212 TYR213 THR214 LEU215 ASN216 SER217 GLN218 LEU219 ASN220 HIS221 LEU222 LEU223 LEU224 LYS225 LEU226 ALA227 ASN228 ALA229 ASN230 GLN231 ILE232 GLY233 TRP234 PRO235 ASP236 ALA237 LEU238 VAL239 ALA240 LEU241 CYS242 ALA243 LEU244 TYR245 LEU246 GLU247 SER248 ALA249 GLU250 PRO251 ASP252 ALA253 PRO254 TRP255 LEU256 TRP257 LEU258 PRO259 PHE260 MET261 ASN262 ARG263 TRP264 GLY265 SER266 VAL267 ALA268 ALA269 ASN270 VAL271 PRO272 GLY273 LEU274 MET275 VAL276 ASN277 SER278 LEU279 PRO280 LEU281 LEU282 ARG283 LEU284 SER285 ALA286 GLN287 GLN288 THR289 SER290 LEU291 GLY292 ASN293 TYR294 LEU295 LYS296 GLN297 SER298 GLY299 GLN300 ALA301 ILE302 ARG303 SER304 LEU305 TYR306 LEU307 HIS308 GLY309 ARG310 TYR311 ARG312 ILE313 GLU314 GLN315 ILE316 GLU317 GLN318 ASP319 GLN320 GLY321 LEU322 ASN323 ALA324 GLU325 GLN326 SER327 TYR328 PHE329 MET330 SER331 PRO332 PHE333 ILE334 ASN335 ILE336 LEU337 PRO338 PHE339 GLU340 SER341 PRO342 HIS343 PHE344 ALA345 ASP346 CYS347 GLN348 THR349 GLU350 LEU351 LYS352 VAL353 LEU354 ALA355 SER356 GLY357 SER358 ALA359 GLU360 GLY361 ILE362 ASN363 PHE364 THR365 PHE366 ARG367 GLY368 SER369 PRO370 GLN371 HIS372 GLU373 LEU374 CYS375 LEU376 ASP377 ILE378 THR379 ALA380 ASP381 LEU382 ALA383 SER384 TYR385 PRO386 GLN387 SER388 HIS389 TRP390 GLN391 SER392 HIS393 CYS394 GLU395 ARG396 PHE397 PRO398 ARG399 PHE400 PHE401 GLU402 GLN403 LEU404 LEU405 ALA406 ARG407 PHE408 GLN409 GLN410 VAL411 GLU412 GLN413 ASP414 VAL415 ALA416 ARG417 LEU418 LEU419 ALA420 GLU421 PRO422 ALA423 ALA424
Unit 3 MET1 LEU2 LEU3 ALA4 GLN5 LYS6 PRO7 PHE8 TRP9 GLN10 ARG11 HIS12 LEU13 ALA14 TYR15 PRO16 HIS17 ILE18 ASN19 LEU20 ASP21 THR22 VAL23 ALA24 HIS25 SER26 LEU27 ARG28 LEU29 THR30 GLY31 PRO32 LEU33 ASP34 THR35 THR36 LEU37 LEU38 LEU39 ARG40 ALA41 LEU42 HIS43 LEU44 THR45 VAL46 SER47 GLU48 ILE49 ASP50 LEU51 PHE52 ARG53 ALA54 ARG55 PHE56 SER57 ALA58 GLN59 GLY60 GLU61 LEU62 TYR63 TRP64 HIS65 PRO66 PHE67 SER68 PRO69 PRO70 ILE71 ASP72 TYR73 GLN74 ASP75 LEU76 SER77 ILE78 HIS79 LEU80 GLU81 ALA82 GLU83 PRO84 LEU85 ALA86 TRP87 ARG88 GLN89 ILE90 GLU91 GLN92 ASP93 LEU94 GLN95 ARG96 SER97 SER98 THR99 LEU100 ILE101 ASP102 ALA103 PRO104 ILE105 THR106 SER107 HIS108 GLN109 VAL110 TYR111 ARG112 LEU113 SER114 HIS115 SER116 GLU117 HIS118 LEU119 ILE120 TYR121 THR122 ARG123 ALA124 HIS125 HIS126 ILE127 VAL128 LEU129 ASP130 GLY131 TYR132 GLY133 MET134 MET135 LEU136 PHE137 GLU138 GLN139 ARG140 LEU141 SER142 GLN143 HIS144 TYR145 GLN146 SER147 LEU148 LEU149 SER150 GLY151 GLN152 THR153 PRO154 THR155 ALA156 ALA157 PHE158 LYS159 PRO160 TYR161 GLN162 SER163 TYR164 LEU165 GLU166 GLU167 GLU168 ALA169 ALA170 TYR171 LEU172 THR173 SER174 HIS175 ARG176 TYR177 TRP178 GLN179 ASP180 LYS181 GLN182 PHE183 TRP184 GLN185 GLY186 TYR187 LEU188 ARG189 GLU190 ALA191 PRO192 ASP193 LEU194 THR195 LEU196 THR197 SER198 ALA199 THR200 TYR201 ASP202 PRO203 GLN204 LEU205 SER206 HIS207 ALA208 VAL209 SER210 LEU211 SER212 TYR213 THR214 LEU215 ASN216 SER217 GLN218 LEU219 ASN220 HIS221 LEU222 LEU223 LEU224 LYS225 LEU226 ALA227 ASN228 ALA229 ASN230 GLN231 ILE232 GLY233 TRP234 PRO235 ASP236 ALA237 LEU238 VAL239 ALA240 LEU241 CYS242 ALA243 LEU244 TYR245 LEU246 GLU247 SER248 ALA249 GLU250 PRO251 ASP252 ALA253 PRO254 TRP255 LEU256 TRP257 LEU258 PRO259 PHE260 MET261 ASN262 ARG263 TRP264 GLY265 SER266 VAL267 ALA268 ALA269 ASN270 VAL271 PRO272 GLY273 LEU274 MET275 VAL276 ASN277 SER278 LEU279 PRO280 LEU281 LEU282 ARG283 LEU284 SER285 ALA286 GLN287 GLN288 THR289 SER290 LEU291 GLY292 ASN293 TYR294 LEU295 LYS296 GLN297 SER298 GLY299 GLN300 ALA301 ILE302 ARG303 SER304 LEU305 TYR306 LEU307 HIS308 GLY309 ARG310 TYR311 ARG312 ILE313 GLU314 GLN315 ILE316 GLU317 GLN318 ASP319 GLN320 GLY321 LEU322 ASN323 ALA324 GLU325 GLN326 SER327 TYR328 PHE329 MET330 SER331 PRO332 PHE333 ILE334 ASN335 ILE336 LEU337 PRO338 PHE339 GLU340 SER341 PRO342 HIS343 PHE344 ALA345 ASP346 CYS347 GLN348 THR349 GLU350 LEU351 LYS352 VAL353 LEU354 ALA355 SER356 GLY357 SER358 ALA359 GLU360 GLY361 ILE362 ASN363 PHE364 THR365 PHE366 ARG367 GLY368 SER369 PRO370 GLN371 HIS372 GLU373 LEU374 CYS375 LEU376 ASP377 ILE378 THR379 ALA380 ASP381 LEU382 ALA383 SER384 TYR385 PRO386 GLN387 SER388 HIS389 TRP390 GLN391 SER392 HIS393 CYS394 GLU395 ARG396 PHE397 PRO398 ARG399 PHE400 PHE401 GLU402 GLN403 LEU404 LEU405 ALA406 ARG407 PHE408 GLN409 GLN410 VAL411 GLU412 GLN413 ASP414 VAL415 ALA416 ARG417 LEU418 LEU419 ALA420 GLU421 PRO422 ALA423 ALA424
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany