1KJ2 - Sequence, Chains, Asymmetric and Biological Units

• Title: MURINE ALLOREACTIVE SCFV TCR-PEPTIDE-MHC CLASS I MOLECULE CO
• Keywords: T CELL RECEPTOR, CLASS I MHC, H-2KB, TCR-PMHC COMPLEX, ALLOG IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1KJ2	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ALLOGENEIC H-2KB MHC CLASS I MOLECULE	H	276	2247	0
2	Protein	NATURALLY PROCESSED OCTAPEPTIDE PKB1	P	8	67	0
3	Protein	BETA-2 MICROGLOBULIN	L	99	821	0
4	Protein	KB5-C20 T-CELL RECEPTOR ALPHA-CHAIN	A	111	881	0
5	Protein	KB5-C20 T-CELL RECEPTOR BETA-CHAIN	B	117	940	0
6	Protein	ALLOGENEIC H-2KB MHC CLASS I MOLECULE	I	277	2254	0
7	Protein	NATURALLY PROCESSED OCTAPEPTIDE PKB1	Q	8	67	0
8	Protein	BETA-2 MICROGLOBULIN	M	99	821	0
9	Protein	KB5-C20 T-CELL RECEPTOR ALPHA-CHAIN	D	111	881	0
10	Protein	KB5-C20 T-CELL RECEPTOR BETA-CHAIN	E	117	940	0
11	Ligand		C	8	0	106
12	Ligand	KB5-C20 T-CELL RECEPTOR BETA-CHAIN	B	1	0	14
13	Ligand	KB5-C20 T-CELL RECEPTOR BETA-CHAIN	E	1	0	14
14	Water			91	0	91
total				1324	9919	225

Proteins

Unit 1	GLY 1 PRO 2 HIS 3 SER 4 LEU 5 ARG 6 TYR 7 PHE 8 VAL 9 THR 10 ALA 11 VAL 12 SER 13 ARG 14 PRO 15 GLY 16 LEU 17 GLY 18 GLU 19 PRO 20 ARG 21 TYR 22 MET 23 GLU 24 VAL 25 GLY 26 TYR 27 VAL 28 ASP 29 ASP 30 THR 31 GLU 32 PHE 33 VAL 34 ARG 35 PHE 36 ASP 37 SER 38 ASP 39 ALA 40 GLU 41 ASN 42 PRO 43 ARG 44 TYR 45 GLU 46 PRO 47 ARG 48 ALA 49 ARG 50 TRP 51 MET 52 GLU 53 GLN 54 GLU 55 GLY 56 PRO 57 GLU 58 TYR 59 TRP 60 GLU 61 ARG 62 GLU 63 THR 64 GLN 65 LYS 66 ALA 67 LYS 68 GLY 69 ASN 70 GLU 71 GLN 72 SER 73 PHE 74 ARG 75 VAL 76 ASP 77 LEU 78 ARG 79 THR 80 LEU 81 LEU 82 GLY 83 TYR 84 TYR 85 ASN 86 GLN 87 SER 88 LYS 89 GLY 90 GLY 91 SER 92 HIS 93 THR 94 ILE 95 GLN 96 VAL 97 ILE 98 SER 99 GLY 100 CYS 101 GLU 102 VAL 103 GLY 104 SER 105 ASP 106 GLY 107 ARG 108 LEU 109 LEU 110 ARG 111 GLY 112 TYR 113 GLN 114 GLN 115 TYR 116 ALA 117 TYR 118 ASP 119 GLY 120 CYS 121 ASP 122 TYR 123 ILE 124 ALA 125 LEU 126 ASN 127 GLU 128 ASP 129 LEU 130 LYS 131 THR 132 TRP 133 THR 134 ALA 135 ALA 136 ASP 137 MET 138 ALA 139 ALA 140 LEU 141 ILE 142 THR 143 LYS 144 HIS 145 LYS 146 TRP 147 GLU 148 GLN 149 ALA 150 GLY 151 GLU 152 ALA 153 GLU 154 ARG 155 LEU 156 ARG 157 ALA 158 TYR 159 LEU 160 GLU 161 GLY 162 THR 163 CYS 164 VAL 165 GLU 166 TRP 167 LEU 168 ARG 169 ARG 170 TYR 171 LEU 172 LYS 173 ASN 174 GLY 175 ASN 176 ALA 177 THR 178 LEU 179 LEU 180 ARG 181 THR 182 ASP 183 SER 184 PRO 185 LYS 186 ALA 187 HIS 188 VAL 189 THR 190 HIS 191 HIS 192 SER 193 ARG 194 PRO 195 GLU 196 ASP 197 LYS 198 VAL 199 THR 200 LEU 201 ARG 202 CYS 203 TRP 204 ALA 205 LEU 206 GLY 207 PHE 208 TYR 209 PRO 210 ALA 211 ASP 212 ILE 213 THR 214 LEU 215 THR 216 TRP 217 GLN 218 LEU 219 ASN 220 GLY 221 GLU 222 GLU 223 LEU 224 ILE 225 GLN 226 ASP 227 MET 228 GLU 229 LEU 230 VAL 231 GLU 232 THR 233 ARG 234 PRO 235 ALA 236 GLY 237 ASP 238 GLY 239 THR 240 PHE 241 GLN 242 LYS 243 TRP 244 ALA 245 SER 246 VAL 247 VAL 248 VAL 249 PRO 250 LEU 251 GLY 252 LYS 253 GLU 254 GLN 255 TYR 256 TYR 257 THR 258 CYS 259 HIS 260 VAL 261 TYR 262 HIS 263 GLN 264 GLY 265 LEU 266 PRO 267 GLU 268 PRO 269 LEU 270 THR 271 LEU 272 ARG 273 TRP 274 GLU 275 PRO 276
Unit 2	LYS 1 VAL 2 ILE 3 THR 4 PHE 5 ILE 6 ASP 7 LEU 8
Unit 3	ILE 1 GLN 2 LYS 3 THR 4 PRO 5 GLN 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 PRO 15 GLU 16 ASN 17 GLY 18 LYS 19 PRO 20 ASN 21 ILE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 THR 28 GLN 29 PHE 30 HIS 31 PRO 32 PRO 33 HIS 34 ILE 35 GLU 36 ILE 37 GLN 38 MET 39 LEU 40 LYS 41 ASN 42 GLY 43 LYS 44 LYS 45 ILE 46 PRO 47 LYS 48 VAL 49 GLU 50 MET 51 SER 52 ASP 53 MET 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 ILE 64 LEU 65 ALA 66 HIS 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 THR 75 ASP 76 THR 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 LYS 83 HIS 84 ASP 85 SER 86 MET 87 ALA 88 GLU 89 PRO 90 LYS 91 THR 92 VAL 93 TYR 94 TRP 95 ASP 96 ARG 97 ASP 98 MET 99
Unit 4	GLN 1 GLN 2 VAL 3 ARG 4 GLN 5 SER 6 PRO 7 GLN 8 SER 9 LEU 10 THR 11 VAL 12 TRP 13 GLU 14 GLY 15 GLU 16 THR 17 ALA 18 ILE 19 LEU 20 ASN 21 CYS 22 SER 23 TYR 24 GLU 25 ASP 26 SER 27 THR 28 PHE 29 ASN 30 TYR 31 PHE 32 PRO 33 TRP 34 TYR 35 GLN 36 GLN 37 PHE 38 PRO 39 GLY 40 GLU 41 GLY 42 PRO 43 ALA 44 LEU 45 LEU 46 ILE 47 SER 48 ILE 49 ARG 50 SER 51 VAL 52 SER 53 ASP 54 LYS 55 LYS 56 GLU 57 ASP 58 GLY 59 ARG 61 PHE 62 THR 63 ILE 64 PHE 65 PHE 66 ASN 67 LYS 68 ARG 69 GLU 70 LYS 71 LYS 72 LEU 73 SER 74 LEU 75 HIS 76 ILE 77 THR 78 ASP 79 SER 80 GLN 81 PRO 82 GLY 83 ASP 84 SER 85 ALA 86 THR 87 TYR 88 PHE 89 CYS 90 ALA 91 ALA 92 ARG 93 TYR 94 GLN 95 GLY 96 GLY 97 ARG 101 ALA 103 LEU 104 ILE 105 PHE 106 GLY 107 THR 108 GLY 109 THR 110 THR 111 VAL 112 SER 113 VAL 114 SER 115 PRO 116
Unit 5	VAL 1 THR 2 LEU 3 LEU 4 GLU 5 GLN 6 ASN 7 PRO 8 ARG 9 TRP 10 ARG 11 LEU 12 VAL 13 PRO 14 ARG 15 GLY 16 GLN 17 ALA 18 VAL 19 ASN 20 LEU 21 ARG 22 CYS 23 ILE 24 LEU 25 LYS 26 ASN 27 SER 28 GLN 29 TYR 30 PRO 30A TRP 31 MET 32 SER 33 TRP 34 TYR 35 GLN 36 GLN 37 ASP 38 LEU 39 GLN 40 LYS 41 GLN 42 LEU 43 GLN 44 TRP 45 LEU 46 PHE 47 THR 48 LEU 49 ARG 50 SER 51 PRO 52 GLY 53 ASP 54 LYS 55 GLU 56 VAL 57 LYS 58 SER 59 LEU 60 PRO 61 GLY 62 ALA 63 ASP 64 TYR 65 LEU 66 ALA 67 THR 68 ARG 69 VAL 70 THR 71 ASP 72 THR 73 GLU 74 LEU 75 ARG 76 LEU 77 GLN 78 VAL 79 ALA 80 ASN 81 MET 82 SER 83 GLN 84 GLY 85 ARG 86 THR 87 LEU 90 TYR 91 CYS 92 THR 93 CYS 94 SER 95 ALA 96 ALA 97 PRO 98 ASP 99 TRP 100 GLY 101 ALA 102 SER 103 ALA 104 GLU 105 THR 105A LEU 106 TYR 107 PHE 108 GLY 109 SER 110 GLY 111 THR 112 ARG 113 LEU 114 THR 115 VAL 116 LEU 116A
Unit 6	GLY 1 PRO 2 HIS 3 SER 4 LEU 5 ARG 6 TYR 7 PHE 8 VAL 9 THR 10 ALA 11 VAL 12 SER 13 ARG 14 PRO 15 GLY 16 LEU 17 GLY 18 GLU 19 PRO 20 ARG 21 TYR 22 MET 23 GLU 24 VAL 25 GLY 26 TYR 27 VAL 28 ASP 29 ASP 30 THR 31 GLU 32 PHE 33 VAL 34 ARG 35 PHE 36 ASP 37 SER 38 ASP 39 ALA 40 GLU 41 ASN 42 PRO 43 ARG 44 TYR 45 GLU 46 PRO 47 ARG 48 ALA 49 ARG 50 TRP 51 MET 52 GLU 53 GLN 54 GLU 55 GLY 56 PRO 57 GLU 58 TYR 59 TRP 60 GLU 61 ARG 62 GLU 63 THR 64 GLN 65 LYS 66 ALA 67 LYS 68 GLY 69 ASN 70 GLU 71 GLN 72 SER 73 PHE 74 ARG 75 VAL 76 ASP 77 LEU 78 ARG 79 THR 80 LEU 81 LEU 82 GLY 83 TYR 84 TYR 85 ASN 86 GLN 87 SER 88 LYS 89 GLY 90 GLY 91 SER 92 HIS 93 THR 94 ILE 95 GLN 96 VAL 97 ILE 98 SER 99 GLY 100 CYS 101 GLU 102 VAL 103 GLY 104 SER 105 ASP 106 GLY 107 ARG 108 LEU 109 LEU 110 ARG 111 GLY 112 TYR 113 GLN 114 GLN 115 TYR 116 ALA 117 TYR 118 ASP 119 GLY 120 CYS 121 ASP 122 TYR 123 ILE 124 ALA 125 LEU 126 ASN 127 GLU 128 ASP 129 LEU 130 LYS 131 THR 132 TRP 133 THR 134 ALA 135 ALA 136 ASP 137 MET 138 ALA 139 ALA 140 LEU 141 ILE 142 THR 143 LYS 144 HIS 145 LYS 146 TRP 147 GLU 148 GLN 149 ALA 150 GLY 151 GLU 152 ALA 153 GLU 154 ARG 155 LEU 156 ARG 157 ALA 158 TYR 159 LEU 160 GLU 161 GLY 162 THR 163 CYS 164 VAL 165 GLU 166 TRP 167 LEU 168 ARG 169 ARG 170 TYR 171 LEU 172 LYS 173 ASN 174 GLY 175 ASN 176 ALA 177 THR 178 LEU 179 LEU 180 ARG 181 THR 182 ASP 183 SER 184 PRO 185 LYS 186 ALA 187 HIS 188 VAL 189 THR 190 HIS 191 HIS 192 SER 193 ARG 194 PRO 195 GLU 196 ASP 197 LYS 198 VAL 199 THR 200 LEU 201 ARG 202 CYS 203 TRP 204 ALA 205 LEU 206 GLY 207 PHE 208 TYR 209 PRO 210 ALA 211 ASP 212 ILE 213 THR 214 LEU 215 THR 216 TRP 217 GLN 218 LEU 219 ASN 220 GLY 221 GLU 222 GLU 223 LEU 224 ILE 225 GLN 226 ASP 227 MET 228 GLU 229 LEU 230 VAL 231 GLU 232 THR 233 ARG 234 PRO 235 ALA 236 GLY 237 ASP 238 GLY 239 THR 240 PHE 241 GLN 242 LYS 243 TRP 244 ALA 245 SER 246 VAL 247 VAL 248 VAL 249 PRO 250 LEU 251 GLY 252 LYS 253 GLU 254 GLN 255 TYR 256 TYR 257 THR 258 CYS 259 HIS 260 VAL 261 TYR 262 HIS 263 GLN 264 GLY 265 LEU 266 PRO 267 GLU 268 PRO 269 LEU 270 THR 271 LEU 272 ARG 273 TRP 274 GLU 275 PRO 276 PRO 277
Unit 7	LYS 1 VAL 2 ILE 3 THR 4 PHE 5 ILE 6 ASP 7 LEU 8
Unit 8	ILE 1 GLN 2 LYS 3 THR 4 PRO 5 GLN 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 PRO 15 GLU 16 ASN 17 GLY 18 LYS 19 PRO 20 ASN 21 ILE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 THR 28 GLN 29 PHE 30 HIS 31 PRO 32 PRO 33 HIS 34 ILE 35 GLU 36 ILE 37 GLN 38 MET 39 LEU 40 LYS 41 ASN 42 GLY 43 LYS 44 LYS 45 ILE 46 PRO 47 LYS 48 VAL 49 GLU 50 MET 51 SER 52 ASP 53 MET 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 ILE 64 LEU 65 ALA 66 HIS 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 THR 75 ASP 76 THR 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 LYS 83 HIS 84 ASP 85 SER 86 MET 87 ALA 88 GLU 89 PRO 90 LYS 91 THR 92 VAL 93 TYR 94 TRP 95 ASP 96 ARG 97 ASP 98 MET 99
Unit 9	GLN 1 GLN 2 VAL 3 ARG 4 GLN 5 SER 6 PRO 7 GLN 8 SER 9 LEU 10 THR 11 VAL 12 TRP 13 GLU 14 GLY 15 GLU 16 THR 17 ALA 18 ILE 19 LEU 20 ASN 21 CYS 22 SER 23 TYR 24 GLU 25 ASP 26 SER 27 THR 28 PHE 29 ASN 30 TYR 31 PHE 32 PRO 33 TRP 34 TYR 35 GLN 36 GLN 37 PHE 38 PRO 39 GLY 40 GLU 41 GLY 42 PRO 43 ALA 44 LEU 45 LEU 46 ILE 47 SER 48 ILE 49 ARG 50 SER 51 VAL 52 SER 53 ASP 54 LYS 55 LYS 56 GLU 57 ASP 58 GLY 59 ARG 61 PHE 62 THR 63 ILE 64 PHE 65 PHE 66 ASN 67 LYS 68 ARG 69 GLU 70 LYS 71 LYS 72 LEU 73 SER 74 LEU 75 HIS 76 ILE 77 THR 78 ASP 79 SER 80 GLN 81 PRO 82 GLY 83 ASP 84 SER 85 ALA 86 THR 87 TYR 88 PHE 89 CYS 90 ALA 91 ALA 92 ARG 93 TYR 94 GLN 95 GLY 96 GLY 97 ARG 101 ALA 103 LEU 104 ILE 105 PHE 106 GLY 107 THR 108 GLY 109 THR 110 THR 111 VAL 112 SER 113 VAL 114 SER 115 PRO 116
Unit 10	VAL 1 THR 2 LEU 3 LEU 4 GLU 5 GLN 6 ASN 7 PRO 8 ARG 9 TRP 10 ARG 11 LEU 12 VAL 13 PRO 14 ARG 15 GLY 16 GLN 17 ALA 18 VAL 19 ASN 20 LEU 21 ARG 22 CYS 23 ILE 24 LEU 25 LYS 26 ASN 27 SER 28 GLN 29 TYR 30 PRO 30A TRP 31 MET 32 SER 33 TRP 34 TYR 35 GLN 36 GLN 37 ASP 38 LEU 39 GLN 40 LYS 41 GLN 42 LEU 43 GLN 44 TRP 45 LEU 46 PHE 47 THR 48 LEU 49 ARG 50 SER 51 PRO 52 GLY 53 ASP 54 LYS 55 GLU 56 VAL 57 LYS 58 SER 59 LEU 60 PRO 61 GLY 62 ALA 63 ASP 64 TYR 65 LEU 66 ALA 67 THR 68 ARG 69 VAL 70 THR 71 ASP 72 THR 73 GLU 74 LEU 75 ARG 76 LEU 77 GLN 78 VAL 79 ALA 80 ASN 81 MET 82 SER 83 GLN 84 GLY 85 ARG 86 THR 87 LEU 90 TYR 91 CYS 92 THR 93 CYS 94 SER 95 ALA 96 ALA 97 PRO 98 ASP 99 TRP 100 GLY 101 ALA 102 SER 103 ALA 104 GLU 105 THR 105A LEU 106 TYR 107 PHE 108 GLY 109 SER 110 GLY 111 THR 112 ARG 113 LEU 114 THR 115 VAL 116 LEU 116A

Ligands

Unit 11	NAG 1 NAG 2 MAN 3 MAN 4 NAG 5 GAL 6 SIA 7 MAN 8
Unit 12	NAG 301
Unit 13	NAG 401