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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RABBIT HEMORRHAGIC DISEASE VIRUS RNA-DE RNA POLYMERASE COMPLEXED WITH MN2+
Keywords RNA-DEPENDENT RNA POLYMERASE, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1KHW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA-DIRECTED RNA POLYMERASE  A 493 3871 0
2  Protein   RNA-DIRECTED RNA POLYMERASE  B 497 3905 0
3  Ligand   RNA-DIRECTED RNA POLYMERASE  A 2 0 2
4  Ligand   RNA-DIRECTED RNA POLYMERASE  B 2 0 2
5 Water     44 0 44
total       1038 7776 48
Proteins
Unit 1 PHE5 CYS6 GLY7 GLU8 PRO9 ILE10 ASP11 TYR12 ARG13 GLY14 ILE15 THR16 ALA17 HIS18 ARG19 LEU20 VAL21 GLY22 ALA23 GLU24 PRO25 ARG26 PRO27 PRO28 VAL29 SER30 GLY31 THR32 ARG33 TYR34 ALA35 LYS36 VAL37 PRO38 GLY39 VAL40 PRO41 ASP42 GLU43 TYR44 LYS45 THR46 GLY47 TYR48 ARG49 PRO50 ALA51 ASN52 LEU53 GLY54 ARG55 SER56 ASP57 PRO58 ASP59 SER60 ASP61 LYS62 SER63 LEU64 MET65 ASN66 ILE67 ALA68 VAL69 LYS70 ASN71 LEU72 GLN73 VAL74 TYR75 GLN76 GLN77 GLU78 PRO79 LYS80 LEU81 ASP82 LYS83 VAL84 ASP85 GLU86 PHE87 ILE88 GLU89 ARG90 ALA91 ALA92 ALA93 ASP94 VAL95 LEU96 GLY97 TYR98 LEU99 ARG100 PHE101 LEU102 THR103 LYS104 GLY105 GLU106 ARG107 GLN108 ALA109 ASN110 LEU111 ASN112 PHE113 LYS114 ALA115 ALA116 PHE117 ASN118 THR119 LEU120 ASP121 LEU122 SER123 THR124 SER125 CYS126 GLY127 PRO128 PHE129 VAL130 PRO131 GLY132 LYS133 LYS134 ILE135 ASP136 HIS137 VAL138 LYS139 ASP140 GLY141 VAL142 MET143 ASP144 GLN145 VAL146 LEU147 ALA148 LYS149 HIS150 LEU151 TYR152 LYS153 CYS154 TRP155 SER156 VAL157 ALA158 ASN159 SER160 GLY161 LYS162 ALA163 LEU164 HIS165 HIS166 ILE167 TYR168 ALA169 CYS170 GLY171 LEU172 LYS173 ASP174 GLU175 LEU176 ARG177 PRO178 LEU179 ASP180 GLY185 LYS186 LYS187 ARG188 LEU189 LEU190 TRP191 GLY192 CYS193 ASP194 VAL195 GLY196 VAL197 ALA198 VAL199 CYS200 ALA201 ALA202 ALA203 VAL204 PHE205 HIS206 ASN207 ILE208 CYS209 TYR210 LYS211 LEU212 LYS213 MET214 VAL215 ALA216 ARG217 PHE218 GLY219 PRO220 ILE221 ALA222 VAL223 GLY224 VAL225 ASP226 MET227 THR228 SER229 ARG230 ASP231 VAL232 ASP233 VAL234 ILE235 ILE236 ASN237 ASN238 LEU239 THR240 SER241 LYS242 ALA243 SER244 ASP245 PHE246 LEU247 CYS248 LEU249 ASP250 TYR251 SER252 LYS253 TRP254 ASP255 SER256 THR257 MET258 SER259 PRO260 CYS261 VAL262 VAL263 ARG264 LEU265 ALA266 ILE267 ASP268 ILE269 LEU270 ALA271 ASP272 CYS273 CYS274 GLU275 GLN276 THR277 GLU278 LEU279 THR280 LYS281 SER282 VAL283 VAL284 LEU285 THR286 LEU287 LYS288 SER289 HIS290 PRO291 MET292 THR293 ILE294 LEU295 ASP296 ALA297 MET298 ILE299 VAL300 GLN301 THR302 LYS303 ARG304 GLY305 LEU306 PRO307 SER308 GLY309 MET310 PRO311 PHE312 THR313 SER314 VAL315 ILE316 ASN317 SER318 ILE319 CYS320 HIS321 TRP322 LEU323 LEU324 TRP325 SER326 ALA327 ALA328 VAL329 TYR330 LYS331 SER332 CYS333 ALA334 GLU335 ILE336 GLY337 LEU338 HIS339 CYS340 SER341 ASN342 LEU343 TYR344 GLU345 ASP346 ALA347 PRO348 PHE349 TYR350 THR351 TYR352 GLY353 ASP354 ASP355 GLY356 VAL357 TYR358 ALA359 MET360 THR361 PRO362 MET363 MET364 VAL365 SER366 LEU367 LEU368 PRO369 ALA370 ILE371 ILE372 GLU373 ASN374 LEU375 ARG376 ASP377 TYR378 GLY379 LEU380 SER381 PRO382 THR383 ALA384 ALA385 ASP386 LYS387 THR388 GLU389 PHE390 ILE391 ASP392 VAL393 CYS394 PRO395 LEU396 ASN397 LYS398 ILE399 SER400 PHE401 LEU402 LYS403 ARG404 THR405 PHE406 GLU407 LEU408 THR409 ASP410 ILE411 GLY412 TRP413 VAL414 SER415 LYS416 LEU417 ASP418 LYS419 SER420 SER421 ILE422 LEU423 ARG424 GLN425 LEU426 GLU427 TRP428 SER429 LYS430 THR431 THR432 SER433 ARG434 HIS435 MET436 VAL437 ILE438 GLU439 GLU440 THR441 TYR442 ASP443 LEU444 ALA445 LYS446 GLU447 GLU448 ARG449 GLY450 VAL451 GLN452 LEU453 GLU454 GLU455 LEU456 GLN457 VAL458 ALA459 ALA460 ALA461 ALA462 HIS463 GLY464 GLN465 GLU466 PHE467 PHE468 ASN469 PHE470 VAL471 CYS472 ARG473 GLU474 LEU475 GLU476 ARG477 GLN478 GLN479 ALA480 TYR481 THR482 GLN483 PHE484 SER485 VAL486 TYR487 SER488 TYR489 ASP490 ALA491 ALA492 ARG493 LYS494 ILE495 LEU496 ALA497 ASP498 ARG499 LYS500 ARG501
Unit 2 PHE5 CYS6 GLY7 GLU8 PRO9 ILE10 ASP11 TYR12 ARG13 GLY14 ILE15 THR16 ALA17 HIS18 ARG19 LEU20 VAL21 GLY22 ALA23 GLU24 PRO25 ARG26 PRO27 PRO28 VAL29 SER30 GLY31 THR32 ARG33 TYR34 ALA35 LYS36 VAL37 PRO38 GLY39 VAL40 PRO41 ASP42 GLU43 TYR44 LYS45 THR46 GLY47 TYR48 ARG49 PRO50 ALA51 ASN52 LEU53 GLY54 ARG55 SER56 ASP57 PRO58 ASP59 SER60 ASP61 LYS62 SER63 LEU64 MET65 ASN66 ILE67 ALA68 VAL69 LYS70 ASN71 LEU72 GLN73 VAL74 TYR75 GLN76 GLN77 GLU78 PRO79 LYS80 LEU81 ASP82 LYS83 VAL84 ASP85 GLU86 PHE87 ILE88 GLU89 ARG90 ALA91 ALA92 ALA93 ASP94 VAL95 LEU96 GLY97 TYR98 LEU99 ARG100 PHE101 LEU102 THR103 LYS104 GLY105 GLU106 ARG107 GLN108 ALA109 ASN110 LEU111 ASN112 PHE113 LYS114 ALA115 ALA116 PHE117 ASN118 THR119 LEU120 ASP121 LEU122 SER123 THR124 SER125 CYS126 GLY127 PRO128 PHE129 VAL130 PRO131 GLY132 LYS133 LYS134 ILE135 ASP136 HIS137 VAL138 LYS139 ASP140 GLY141 VAL142 MET143 ASP144 GLN145 VAL146 LEU147 ALA148 LYS149 HIS150 LEU151 TYR152 LYS153 CYS154 TRP155 SER156 VAL157 ALA158 ASN159 SER160 GLY161 LYS162 ALA163 LEU164 HIS165 HIS166 ILE167 TYR168 ALA169 CYS170 GLY171 LEU172 LYS173 ASP174 GLU175 LEU176 ARG177 PRO178 LEU179 ASP180 LYS181 VAL182 LYS183 GLU184 GLY185 LYS186 LYS187 ARG188 LEU189 LEU190 TRP191 GLY192 CYS193 ASP194 VAL195 GLY196 VAL197 ALA198 VAL199 CYS200 ALA201 ALA202 ALA203 VAL204 PHE205 HIS206 ASN207 ILE208 CYS209 TYR210 LYS211 LEU212 LYS213 MET214 VAL215 ALA216 ARG217 PHE218 GLY219 PRO220 ILE221 ALA222 VAL223 GLY224 VAL225 ASP226 MET227 THR228 SER229 ARG230 ASP231 VAL232 ASP233 VAL234 ILE235 ILE236 ASN237 ASN238 LEU239 THR240 SER241 LYS242 ALA243 SER244 ASP245 PHE246 LEU247 CYS248 LEU249 ASP250 TYR251 SER252 LYS253 TRP254 ASP255 SER256 THR257 MET258 SER259 PRO260 CYS261 VAL262 VAL263 ARG264 LEU265 ALA266 ILE267 ASP268 ILE269 LEU270 ALA271 ASP272 CYS273 CYS274 GLU275 GLN276 THR277 GLU278 LEU279 THR280 LYS281 SER282 VAL283 VAL284 LEU285 THR286 LEU287 LYS288 SER289 HIS290 PRO291 MET292 THR293 ILE294 LEU295 ASP296 ALA297 MET298 ILE299 VAL300 GLN301 THR302 LYS303 ARG304 GLY305 LEU306 PRO307 SER308 GLY309 MET310 PRO311 PHE312 THR313 SER314 VAL315 ILE316 ASN317 SER318 ILE319 CYS320 HIS321 TRP322 LEU323 LEU324 TRP325 SER326 ALA327 ALA328 VAL329 TYR330 LYS331 SER332 CYS333 ALA334 GLU335 ILE336 GLY337 LEU338 HIS339 CYS340 SER341 ASN342 LEU343 TYR344 GLU345 ASP346 ALA347 PRO348 PHE349 TYR350 THR351 TYR352 GLY353 ASP354 ASP355 GLY356 VAL357 TYR358 ALA359 MET360 THR361 PRO362 MET363 MET364 VAL365 SER366 LEU367 LEU368 PRO369 ALA370 ILE371 ILE372 GLU373 ASN374 LEU375 ARG376 ASP377 TYR378 GLY379 LEU380 SER381 PRO382 THR383 ALA384 ALA385 ASP386 LYS387 THR388 GLU389 PHE390 ILE391 ASP392 VAL393 CYS394 PRO395 LEU396 ASN397 LYS398 ILE399 SER400 PHE401 LEU402 LYS403 ARG404 THR405 PHE406 GLU407 LEU408 THR409 ASP410 ILE411 GLY412 TRP413 VAL414 SER415 LYS416 LEU417 ASP418 LYS419 SER420 SER421 ILE422 LEU423 ARG424 GLN425 LEU426 GLU427 TRP428 SER429 LYS430 THR431 THR432 SER433 ARG434 HIS435 MET436 VAL437 ILE438 GLU439 GLU440 THR441 TYR442 ASP443 LEU444 ALA445 LYS446 GLU447 GLU448 ARG449 GLY450 VAL451 GLN452 LEU453 GLU454 GLU455 LEU456 GLN457 VAL458 ALA459 ALA460 ALA461 ALA462 HIS463 GLY464 GLN465 GLU466 PHE467 PHE468 ASN469 PHE470 VAL471 CYS472 ARG473 GLU474 LEU475 GLU476 ARG477 GLN478 GLN479 ALA480 TYR481 THR482 GLN483 PHE484 SER485 VAL486 TYR487 SER488 TYR489 ASP490 ALA491 ALA492 ARG493 LYS494 ILE495 LEU496 ALA497 ASP498 ARG499 LYS500 ARG501
Ligands
Unit 3 MN601 MN602
Unit 4 MN603 MN604
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany