1JVD - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN AGX2 COMPLEXED WITH UDPGLCNAC
• Keywords: NUCLEOTIDYLTRANSFERASE, ALTERNATIVE SPLICING
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1JVD	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	UDPGLCNAC PYROPHOSPHORYLASE (AGX2)	A	480	3816	0
2	Protein	UDPGLCNAC PYROPHOSPHORYLASE (AGX2)	B	486	3851	0
3	Ligand	UDPGLCNAC PYROPHOSPHORYLASE (AGX2)	A	1	0	39
4	Ligand	UDPGLCNAC PYROPHOSPHORYLASE (AGX2)	B	1	0	39
5	Water			310	0	310
total				1278	7667	388

Proteins

Unit 1

ASN 2 ILE 3 ASN 4 ASP 5 LEU 6 LYS 7 LEU 8 THR 9 LEU 10 SER 11 LYS 12 ALA 13 GLY 14 GLN 15 GLU 16 HIS 17 LEU 18 LEU 19 ARG 20 PHE 21 TRP 22 ASN 23 GLU 24 LEU 25 GLU 26 GLU 27 ALA 28 GLN 29 GLN 30 VAL 31 GLU 32 LEU 33 TYR 34 ALA 35 GLU 36 LEU 37 GLN 38 ALA 39 MET 40 ASN 41 PHE 42 GLU 43 GLU 44 LEU 45 ASN 46 PHE 47 PHE 48 PHE 49 GLN 50 LYS 51 ALA 52 ILE 53 GLU 54 GLY 55 PHE 56 ARG 68 MET 69 GLU 70 PRO 71 VAL 72 PRO 73 ARG 74 GLU 75 VAL 76 LEU 77 GLY 78 SER 79 ALA 80 THR 81 ARG 82 ASP 83 GLN 84 ASP 85 GLN 86 LEU 87 GLN 88 ALA 89 TRP 90 GLU 91 SER 92 GLU 93 GLY 94 LEU 95 PHE 96 GLN 97 ILE 98 SER 99 GLN 100 ASN 101 LYS 102 VAL 103 ALA 104 VAL 105 LEU 106 LEU 107 LEU 108 ALA 109 GLY 110 GLY 111 GLN 112 VAL 118 ALA 119 TYR 120 PRO 121 LYS 122 GLY 123 MET 124 TYR 125 ASP 126 VAL 127 GLY 128 LEU 129 PRO 130 SER 131 ARG 132 LYS 133 THR 134 LEU 135 PHE 136 GLN 137 ILE 138 GLN 139 ALA 140 GLU 141 ARG 142 ILE 143 LEU 144 LYS 145 LEU 146 GLN 147 GLN 148 VAL 149 ALA 150 GLU 151 LYS 152 TYR 153 TYR 154 GLY 155 ASN 156 LYS 157 CYS 158 ILE 159 ILE 160 PRO 161 TRP 162 TYR 163 ILE 164 MET 165 THR 166 SER 167 GLY 168 ARG 169 THR 170 MET 171 GLU 172 SER 173 THR 174 LYS 175 GLU 176 PHE 177 PHE 178 THR 179 LYS 180 HIS 181 LYS 182 TYR 183 PHE 184 GLY 185 LEU 186 LYS 187 LYS 188 GLU 189 ASN 190 VAL 191 ILE 192 PHE 193 PHE 194 GLN 195 GLN 196 GLY 197 MET 198 LEU 199 PRO 200 ALA 201 MET 202 SER 203 PHE 204 ASP 205 GLY 206 LYS 207 ILE 208 ILE 209 LEU 210 GLU 211 GLU 212 LYS 213 ASN 214 LYS 215 VAL 216 SER 217 MET 218 ALA 219 PRO 220 ASP 221 GLY 222 ASN 223 GLY 224 GLY 225 LEU 226 TYR 227 ARG 228 ALA 229 LEU 230 ALA 231 ALA 232 GLN 233 ASN 234 ILE 235 VAL 236 GLU 237 ASP 238 MET 239 GLU 240 GLN 241 ARG 242 GLY 243 ILE 244 TRP 245 SER 246 ILE 247 HIS 248 VAL 249 TYR 250 CYS 251 VAL 252 ASP 253 ASN 254 ILE 255 LEU 256 VAL 257 LYS 258 VAL 259 ALA 260 ASP 261 PRO 262 ARG 263 PHE 264 ILE 265 GLY 266 PHE 267 CYS 268 ILE 269 GLN 270 LYS 271 GLY 272 ALA 273 ASP 274 CYS 275 GLY 276 ALA 277 LYS 278 VAL 279 VAL 280 GLU 281 LYS 282 THR 283 ASN 284 PRO 285 THR 286 GLU 287 PRO 288 VAL 289 GLY 290 VAL 291 VAL 292 CYS 293 ARG 294 VAL 295 ASP 296 GLY 297 VAL 298 TYR 299 GLN 300 VAL 301 VAL 302 GLU 303 TYR 304 SER 305 GLU 306 ILE 307 SER 308 LEU 309 ALA 310 THR 311 ALA 312 GLN 313 LYS 314 ARG 315 SER 316 SER 317 ASP 318 GLY 319 ARG 320 LEU 321 LEU 322 PHE 323 ASN 324 ALA 325 GLY 326 ASN 327 ILE 328 ALA 329 ASN 330 HIS 331 PHE 332 PHE 333 THR 334 VAL 335 PRO 336 PHE 337 LEU 338 ARG 339 ASP 340 VAL 341 VAL 342 ASN 343 VAL 344 TYR 345 GLU 346 PRO 347 GLN 348 LEU 349 GLN 350 HIS 351 HIS 352 VAL 353 ALA 354 GLN 355 LYS 356 LYS 357 ILE 358 PRO 359 TYR 360 VAL 361 ASP 362 THR 363 GLN 364 GLY 365 GLN 366 LEU 367 ILE 368 LYS 369 PRO 370 ASP 371 LYS 372 PRO 373 ASN 374 GLY 375 ILE 376 LYS 377 MET 378 GLU 379 LYS 380 PHE 381 VAL 382 PHE 383 ASP 384 ILE 385 PHE 386 GLN 387 PHE 388 ALA 389 LYS 390 LYS 391 PHE 392 VAL 393 VAL 394 TYR 395 GLU 396 VAL 397 LEU 398 ARG 399 GLU 400 ASP 401 GLU 402 PHE 403 SER 404 PRO 405 LEU 406 LYS 407 ASN 408 ALA 409 ASP 410 SER 411 GLN 412 ASN 413 GLY 414 LYS 415 ASP 416 ASN 417 PRO 418 THR 419 THR 420 ALA 421 ARG 422 HIS 423 ALA 424 LEU 425 MET 426 SER 427 LEU 428 HIS 429 HIS 430 CYS 431 TRP 432 VAL 433 LEU 434 ASN 435 ALA 436 GLY 437 GLY 438 HIS 439 PHE 440 ILE 441 ASP 442 GLU 443 ASN 444 GLY 445 SER 446 ARG 447 LEU 448 PRO 449 ALA 450 ILE 451 PRO 452 ARG 453 SER 454 ALA 455 THR 456 VAL 477 PRO 478 ILE 479 GLN 480 CYS 481 GLU 482 ILE 483 SER 484 PRO 485 LEU 486 ILE 487 SER 488 TYR 489 ALA 490 GLY 491 GLU 492 GLY 493 LEU 494 GLU 495 SER 496 TYR 497 VAL 498 ALA 499 ASP 500 LYS 501 GLU 502 PHE 503 HIS 504 ALA 505 PRO 506 LEU 507 ILE 508 ILE 509 ASP 510 GLU 511 ASN 512 GLY 513 VAL 514 HIS 515 GLU 516 LEU 517

Unit 2

ASN 2 ILE 3 ASN 4 ASP 5 LEU 6 LYS 7 LEU 8 THR 9 LEU 10 SER 11 LYS 12 ALA 13 GLY 14 GLN 15 GLU 16 HIS 17 LEU 18 LEU 19 ARG 20 PHE 21 TRP 22 ASN 23 GLU 24 LEU 25 GLU 26 GLU 27 ALA 28 GLN 29 GLN 30 VAL 31 GLU 32 LEU 33 TYR 34 ALA 35 GLU 36 LEU 37 GLN 38 ALA 39 MET 40 ASN 41 PHE 42 GLU 43 GLU 44 LEU 45 ASN 46 PHE 47 PHE 48 PHE 49 GLN 50 LYS 51 ALA 52 ILE 53 GLU 54 GLY 55 PHE 56 ASN 57 GLN 58 ASN 64 VAL 65 ASP 66 ALA 67 ARG 68 MET 69 GLU 70 PRO 71 VAL 72 PRO 73 ARG 74 GLU 75 VAL 76 LEU 77 GLY 78 SER 79 ALA 80 THR 81 ARG 82 ASP 83 GLN 84 ASP 85 GLN 86 LEU 87 GLN 88 ALA 89 TRP 90 GLU 91 SER 92 GLU 93 GLY 94 LEU 95 PHE 96 GLN 97 ILE 98 SER 99 GLN 100 ASN 101 LYS 102 VAL 103 ALA 104 VAL 105 LEU 106 LEU 107 LEU 108 ALA 109 GLY 110 GLY 111 GLN 112 GLY 113 THR 114 ARG 115 ALA 119 TYR 120 PRO 121 LYS 122 GLY 123 MET 124 TYR 125 ASP 126 VAL 127 GLY 128 LEU 129 PRO 130 SER 131 ARG 132 LYS 133 THR 134 LEU 135 PHE 136 GLN 137 ILE 138 GLN 139 ALA 140 GLU 141 ARG 142 ILE 143 LEU 144 LYS 145 LEU 146 GLN 147 GLN 148 VAL 149 ALA 150 GLU 151 LYS 152 TYR 153 TYR 154 GLY 155 ASN 156 LYS 157 CYS 158 ILE 159 ILE 160 PRO 161 TRP 162 TYR 163 ILE 164 MET 165 THR 166 SER 167 GLY 168 ARG 169 THR 170 MET 171 GLU 172 SER 173 THR 174 LYS 175 GLU 176 PHE 177 PHE 178 THR 179 LYS 180 HIS 181 LYS 182 TYR 183 PHE 184 GLY 185 LEU 186 LYS 187 LYS 188 GLU 189 ASN 190 VAL 191 ILE 192 PHE 193 PHE 194 GLN 195 GLN 196 GLY 197 MET 198 LEU 199 PRO 200 ALA 201 MET 202 SER 203 PHE 204 ASP 205 GLY 206 LYS 207 ILE 208 ILE 209 LEU 210 GLU 211 GLU 212 LYS 213 ASN 214 LYS 215 VAL 216 SER 217 MET 218 ALA 219 PRO 220 ASP 221 GLY 222 ASN 223 GLY 224 GLY 225 LEU 226 TYR 227 ARG 228 ALA 229 LEU 230 ALA 231 ALA 232 GLN 233 ASN 234 ILE 235 VAL 236 GLU 237 ASP 238 MET 239 GLU 240 GLN 241 ARG 242 GLY 243 ILE 244 TRP 245 SER 246 ILE 247 HIS 248 VAL 249 TYR 250 CYS 251 VAL 252 ASP 253 ASN 254 ILE 255 LEU 256 VAL 257 LYS 258 VAL 259 ALA 260 ASP 261 PRO 262 ARG 263 PHE 264 ILE 265 GLY 266 PHE 267 CYS 268 ILE 269 GLN 270 LYS 271 GLY 272 ALA 273 ASP 274 CYS 275 GLY 276 ALA 277 LYS 278 VAL 279 VAL 280 GLU 281 LYS 282 THR 283 ASN 284 PRO 285 THR 286 GLU 287 PRO 288 VAL 289 GLY 290 VAL 291 VAL 292 CYS 293 ARG 294 VAL 295 ASP 296 GLY 297 VAL 298 TYR 299 GLN 300 VAL 301 VAL 302 GLU 303 TYR 304 SER 305 GLU 306 ILE 307 SER 308 LEU 309 ALA 310 THR 311 ALA 312 GLN 313 LYS 314 ARG 315 SER 316 SER 317 ASP 318 GLY 319 ARG 320 LEU 321 LEU 322 PHE 323 ASN 324 ALA 325 GLY 326 ASN 327 ILE 328 ALA 329 ASN 330 HIS 331 PHE 332 PHE 333 THR 334 VAL 335 PRO 336 PHE 337 LEU 338 ARG 339 ASP 340 VAL 341 VAL 342 ASN 343 VAL 344 TYR 345 GLU 346 PRO 347 GLN 348 LEU 349 GLN 350 HIS 351 HIS 352 VAL 353 ALA 354 GLN 355 LYS 356 LYS 357 ILE 358 PRO 359 TYR 360 VAL 361 ASP 362 THR 363 GLN 364 GLY 365 GLN 366 LEU 367 ILE 368 LYS 369 PRO 370 ASP 371 LYS 372 PRO 373 ASN 374 GLY 375 ILE 376 LYS 377 MET 378 GLU 379 LYS 380 PHE 381 VAL 382 PHE 383 ASP 384 ILE 385 PHE 386 GLN 387 PHE 388 ALA 389 LYS 390 LYS 391 PHE 392 VAL 393 VAL 394 TYR 395 GLU 396 VAL 397 LEU 398 ARG 399 GLU 400 ASP 401 GLU 402 PHE 403 SER 404 PRO 405 LEU 406 LYS 407 ASN 408 ALA 409 ASP 410 SER 411 GLN 412 ASN 413 GLY 414 LYS 415 ASP 416 ASN 417 PRO 418 THR 419 THR 420 ALA 421 ARG 422 HIS 423 ALA 424 LEU 425 MET 426 SER 427 LEU 428 HIS 429 HIS 430 CYS 431 TRP 432 VAL 433 LEU 434 ASN 435 ALA 436 GLY 437 GLY 438 HIS 439 PHE 440 ILE 441 ASP 442 GLU 443 ASN 444 GLY 445 SER 446 ARG 447 LEU 448 PRO 449 ALA 450 ILE 451 PRO 452 ARG 453 VAL 477 PRO 478 ILE 479 GLN 480 CYS 481 GLU 482 ILE 483 SER 484 PRO 485 LEU 486 ILE 487 SER 488 TYR 489 ALA 490 GLY 491 GLU 492 GLY 493 LEU 494 GLU 495 SER 496 TYR 497 VAL 498 ALA 499 ASP 500 LYS 501 GLU 502 PHE 503 HIS 504 ALA 505 PRO 506 LEU 507 ILE 508 ILE 509 ASP 510 GLU 511 ASN 512 GLY 513 VAL 514 HIS 515 GLU 516 LEU 517 VAL 518

Ligands

Unit 3	UD1 901
Unit 4	UD1 902