1JVA - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE VMA1-DERIVED ENDONUCLEASE BEARING THE N AND C EXTEIN PROPEPTIDES
• Keywords: PROTEIN-SPLICING, VMA1-DERIVED ENDONUCLEASE, INTEIN, THIAZOLIDINE INTERMEDIATE, VDE, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1JVA	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	VMA1-DERIVED HOMING ENDONUCLEASE X10SSS	A	427	3363	0
2	Protein	VMA1-DERIVED HOMING ENDONUCLEASE X10SSS	B	430	3392	0
3	Water			205	0	205
total				1062	6755	205

Proteins

Unit 1

VAL 282 GLY 283 SER 284 PHE 285 ALA 286 LYS 287 GLY 288 THR 289 ASN 290 VAL 291 LEU 292 MET 293 ALA 294 ASP 295 GLY 296 SER 297 ILE 298 GLU 299 CYS 300 ILE 301 GLU 302 ASN 303 ILE 304 GLU 305 VAL 306 GLY 307 ASN 308 LYS 309 VAL 310 MET 311 GLY 312 LYS 313 ASP 314 GLY 315 ARG 316 PRO 317 ARG 318 GLU 319 VAL 320 ILE 321 LYS 322 LEU 323 PRO 324 ARG 325 GLY 326 ARG 327 GLU 328 THR 329 MET 330 TYR 331 SER 332 VAL 333 VAL 334 GLN 335 LYS 336 SER 337 GLU 349 VAL 350 PRO 351 GLU 352 LEU 353 LEU 354 LYS 355 PHE 356 THR 357 CYS 358 ASN 359 ALA 360 THR 361 ASN 362 GLU 363 LEU 364 VAL 365 VAL 366 ARG 367 THR 368 PRO 369 ARG 370 SER 371 VAL 372 ARG 373 ARG 374 LEU 375 SER 376 ARG 377 THR 378 ILE 379 LYS 380 GLY 381 VAL 382 GLU 383 TYR 384 PHE 385 GLU 386 VAL 387 ILE 388 THR 389 PHE 390 GLU 391 MET 392 GLY 393 GLN 394 LYS 395 LYS 396 ALA 397 PRO 398 ASP 399 GLY 400 ARG 401 ILE 402 VAL 403 GLU 404 LEU 405 VAL 406 LYS 407 GLU 408 VAL 409 SER 410 LYS 411 SER 412 TYR 413 PRO 414 ILE 415 SER 416 GLU 417 GLY 418 PRO 419 GLU 420 ARG 421 ALA 422 ASN 423 GLU 424 LEU 425 VAL 426 GLU 427 SER 428 TYR 429 ARG 430 LYS 431 ALA 432 SER 433 ASN 434 LYS 435 ALA 436 TYR 437 PHE 438 GLU 439 TRP 440 THR 441 ILE 442 GLU 443 ALA 444 ARG 445 ASP 446 LEU 447 SER 448 LEU 449 LEU 450 GLY 451 SER 452 HIS 453 VAL 454 ARG 455 LYS 456 ALA 457 THR 458 TYR 459 GLN 460 THR 461 TYR 462 ALA 463 PRO 464 ILE 465 LEU 466 TYR 467 GLU 468 ASN 469 ASP 470 HIS 471 PHE 472 PHE 473 ASP 474 TYR 475 MET 476 GLN 477 LYS 478 SER 479 LYS 480 PHE 481 HIS 482 LEU 483 THR 484 ILE 485 GLU 486 GLY 487 PRO 488 LYS 489 VAL 490 LEU 491 ALA 492 TYR 493 LEU 494 LEU 495 GLY 496 LEU 497 TRP 498 ILE 499 GLY 500 ASP 501 GLY 502 LEU 503 SER 504 ASP 505 ARG 506 ALA 507 THR 508 PHE 509 SER 510 VAL 511 ASP 512 SER 513 ARG 514 ASP 515 THR 516 SER 517 LEU 518 MET 519 GLU 520 ARG 521 VAL 522 THR 523 GLU 524 TYR 525 ALA 526 GLU 527 LYS 528 LEU 529 ASN 530 LEU 531 CYS 532 ALA 533 GLU 534 TYR 535 LYS 536 ASP 537 ARG 538 LYS 539 GLU 540 PRO 541 GLN 542 VAL 543 ALA 544 LYS 545 THR 546 VAL 547 ASN 548 LEU 549 TYR 550 SER 551 LYS 552 VAL 553 GLU 566 ASN 567 PRO 568 LEU 569 TRP 570 ASP 571 ALA 572 ILE 573 VAL 574 GLY 575 LEU 576 GLY 577 PHE 578 LEU 579 LYS 580 ASP 581 GLY 582 VAL 583 LYS 584 ASN 585 ILE 586 PRO 587 SER 588 PHE 589 LEU 590 SER 591 THR 592 ASP 593 ASN 594 ILE 595 GLY 596 THR 597 ARG 598 GLU 599 THR 600 PHE 601 LEU 602 ALA 603 GLY 604 LEU 605 ILE 606 ASP 607 SER 608 ASP 609 GLY 610 TYR 611 VAL 612 THR 613 ASP 614 GLU 615 HIS 616 GLY 617 ILE 618 LYS 619 ALA 620 THR 621 ILE 622 LYS 623 THR 624 ILE 625 HIS 626 THR 627 SER 628 VAL 629 ARG 630 ASP 631 GLY 632 LEU 633 VAL 634 SER 635 LEU 636 ALA 637 ARG 638 SER 639 LEU 640 GLY 641 LEU 642 VAL 643 VAL 644 SER 645 VAL 646 ASN 647 ALA 648 GLU 649 PRO 650 LYS 661 ILE 662 SER 663 TYR 664 ALA 665 ILE 666 TYR 667 MET 668 SER 669 GLY 670 GLY 671 ASP 672 VAL 673 LEU 674 LEU 675 ASN 676 VAL 677 LEU 678 SER 679 LYS 680 CYS 681 ALA 682 GLY 683 SER 684 LYS 685 LYS 686 PHE 687 ARG 688 PRO 689 ALA 690 PRO 691 ALA 692 ALA 693 ALA 694 PHE 695 ALA 696 ARG 697 GLU 698 CYS 699 ARG 700 GLY 701 PHE 702 TYR 703 PHE 704 GLU 705 LEU 706 GLN 707 GLU 708 LEU 709 LYS 710 GLU 711 ASP 712 ASP 713 TYR 714 TYR 715 GLY 716 ILE 717 THR 718 LEU 719 SER 720 ASP 721 ASP 722 SER 723 ASP 724 HIS 725 GLN 726 PHE 727 LEU 728 LEU 729 ALA 730 ASN 731 GLN 732 VAL 733 VAL 734 VAL 735 HIS 736 SER 737 SER 738 GLY 739 GLU 740 ARG 741

Unit 2

ILE 279 ILE 280 TYR 281 VAL 282 GLY 283 SER 284 PHE 285 ALA 286 LYS 287 GLY 288 THR 289 ASN 290 VAL 291 LEU 292 MET 293 ALA 294 ASP 295 GLY 296 SER 297 ILE 298 GLU 299 CYS 300 ILE 301 GLU 302 ASN 303 ILE 304 GLU 305 VAL 306 GLY 307 ASN 308 LYS 309 VAL 310 MET 311 GLY 312 LYS 313 ASP 314 GLY 315 ARG 316 PRO 317 ARG 318 GLU 319 VAL 320 ILE 321 LYS 322 LEU 323 PRO 324 ARG 325 GLY 326 ARG 327 GLU 328 THR 329 MET 330 TYR 331 SER 332 VAL 333 VAL 334 GLN 335 LYS 336 SER 337 PRO 351 GLU 352 LEU 353 LEU 354 LYS 355 PHE 356 THR 357 CYS 358 ASN 359 ALA 360 THR 361 ASN 362 GLU 363 LEU 364 VAL 365 VAL 366 ARG 367 THR 368 PRO 369 ARG 370 SER 371 VAL 372 ARG 373 ARG 374 LEU 375 SER 376 ARG 377 THR 378 ILE 379 LYS 380 GLY 381 VAL 382 GLU 383 TYR 384 PHE 385 GLU 386 VAL 387 ILE 388 THR 389 PHE 390 GLU 391 MET 392 GLY 393 GLN 394 LYS 395 LYS 396 ALA 397 PRO 398 ASP 399 GLY 400 ARG 401 ILE 402 VAL 403 GLU 404 LEU 405 VAL 406 LYS 407 GLU 408 VAL 409 SER 410 LYS 411 SER 412 TYR 413 PRO 414 ILE 415 SER 416 GLU 417 GLY 418 PRO 419 GLU 420 ARG 421 ALA 422 ASN 423 GLU 424 LEU 425 VAL 426 GLU 427 SER 428 TYR 429 ARG 430 LYS 431 ALA 432 SER 433 ASN 434 LYS 435 ALA 436 TYR 437 PHE 438 GLU 439 TRP 440 THR 441 ILE 442 GLU 443 ALA 444 ARG 445 ASP 446 LEU 447 SER 448 LEU 449 LEU 450 GLY 451 SER 452 HIS 453 VAL 454 ARG 455 LYS 456 ALA 457 THR 458 TYR 459 GLN 460 THR 461 TYR 462 ALA 463 PRO 464 ILE 465 LEU 466 TYR 467 GLU 468 ASN 469 ASP 470 HIS 471 PHE 472 PHE 473 ASP 474 TYR 475 MET 476 GLN 477 LYS 478 SER 479 LYS 480 PHE 481 HIS 482 LEU 483 THR 484 ILE 485 GLU 486 GLY 487 PRO 488 LYS 489 VAL 490 LEU 491 ALA 492 TYR 493 LEU 494 LEU 495 GLY 496 LEU 497 TRP 498 ILE 499 GLY 500 ASP 501 GLY 502 LEU 503 SER 504 ASP 505 ARG 506 ALA 507 THR 508 PHE 509 SER 510 VAL 511 ASP 512 SER 513 ARG 514 ASP 515 THR 516 SER 517 LEU 518 MET 519 GLU 520 ARG 521 VAL 522 THR 523 GLU 524 TYR 525 ALA 526 GLU 527 LYS 528 LEU 529 ASN 530 LEU 531 CYS 532 ALA 533 GLU 534 TYR 535 LYS 536 ASP 537 ARG 538 LYS 539 GLU 540 PRO 541 GLN 542 VAL 543 ALA 544 LYS 545 THR 546 VAL 547 ASN 548 LEU 549 TYR 550 SER 551 LEU 563 ASN 564 THR 565 GLU 566 ASN 567 PRO 568 LEU 569 TRP 570 ASP 571 ALA 572 ILE 573 VAL 574 GLY 575 LEU 576 GLY 577 PHE 578 LEU 579 LYS 580 ASP 581 GLY 582 VAL 583 LYS 584 ASN 585 ILE 586 PRO 587 SER 588 PHE 589 LEU 590 SER 591 THR 592 ASP 593 ASN 594 ILE 595 GLY 596 THR 597 ARG 598 GLU 599 THR 600 PHE 601 LEU 602 ALA 603 GLY 604 LEU 605 ILE 606 ASP 607 SER 608 ASP 609 GLY 610 TYR 611 VAL 612 THR 613 ASP 614 GLU 615 HIS 616 GLY 617 ILE 618 LYS 619 ALA 620 THR 621 ILE 622 LYS 623 THR 624 ILE 625 HIS 626 THR 627 SER 628 VAL 629 ARG 630 ASP 631 GLY 632 LEU 633 VAL 634 SER 635 LEU 636 ALA 637 ARG 638 SER 639 LEU 640 GLY 641 LEU 642 VAL 643 VAL 644 SER 645 VAL 646 ASN 647 ALA 648 GLU 649 PRO 650 HIS 660 LYS 661 ILE 662 SER 663 TYR 664 ALA 665 ILE 666 TYR 667 MET 668 SER 669 GLY 670 GLY 671 ASP 672 VAL 673 LEU 674 LEU 675 ASN 676 VAL 677 LEU 678 SER 679 LYS 680 CYS 681 ALA 682 GLY 683 SER 684 LYS 685 LYS 686 PHE 687 ARG 688 PRO 689 ALA 690 PRO 691 ALA 692 ALA 693 ALA 694 PHE 695 ALA 696 ARG 697 GLU 698 CYS 699 ARG 700 GLY 701 PHE 702 TYR 703 PHE 704 GLU 705 LEU 706 GLN 707 GLU 708 LEU 709 LYS 710 GLU 711 ASP 712 ASP 713 TYR 714 TYR 715 GLY 716 ILE 717 THR 718 LEU 719 SER 720 ASP 721 ASP 722 SER 723 ASP 724 HIS 725 GLN 726 PHE 727 LEU 728 LEU 729 ALA 730 ASN 731 GLN 732 VAL 733 VAL 734 VAL 735 HIS 736 SER 737 SER 738 GLY 739 GLU 740 ARG 741