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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF SL4 RNA FROM THE HIV-1 PACKAGING SIGNAL
Keywords HAIRPIN, TANDEM G-U PAIRS, GAGA TETRALOOPS, RNA
Experiment NMR
Number of Models  14


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1JTW     released     available     available     Quaternary Structure Server  
NDB   1JTW                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 16 523 0
2  Ligand   5'- R(*GP*GP*GP*UP*GP*CP*GP*AP*GP*AP*GP*CP*GP*UP*CP*A)-3'  A 15 0 15
total       31 523 15

Nucleic acids
Unit 1 G1 G2 G3 U4 G5 C6 G7 A8 G9 A10 G11 C12 G13 U14 C15 A16

Ligands
Unit 2 NA17 NA18 NA19 NA20 NA21 NA22 NA23 NA24 NA25 NA26 NA27 NA28 NA29 NA30 NA31

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany