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Sequence, Chains, Asymmetric and Biological Units

Title DEGENERATE INTERFACES IN ANTIGEN-ANTIBODY COMPLEXES
Keywords IMMUNOGLOBULIN, HEAVY CHAIN ANTIBODY, VHH, INTERFACE, ANTIBO HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1JTO     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VH SINGLE-DOMAIN ANTIBODY  A 132 973 0
2  Protein   VH SINGLE-DOMAIN ANTIBODY  B 132 973 0
3  Protein   LYSOZYME  L 129 1001 0
4  Protein   LYSOZYME  M 129 1001 0
5 Water     49 0 49
total       571 3948 49

Proteins
Unit 1 VAL2 GLN3 LEU4 GLN5 ALA6 SER7 GLY8 GLY9 GLY10 SER11 VAL12 GLN13 ALA14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 TYR27 THR28 ILE29 GLY30 PRO31 TYR32 CYS33 MET34 GLY35 TRP36 PHE37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLU44 ARG45 GLU46 GLY47 VAL48 ALA49 ALA50 ILE51 ASN52 MET53 GLY54 GLY55 GLY56 ILE57 THR58 TYR59 TYR60 ALA61 ASP62 SER63 VAL64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 GLN72 ASP73 ASN74 ALA75 LYS76 ASN77 THR78 VAL79 TYR80 LEU81 LEU82 MET83 ASN84 SER85 LEU86 GLU87 PRO88 GLU89 ASP90 THR91 ALA92 ILE93 TYR94 TYR95 CYS96 ALA97 ALA98 ASP99 SER100 THR101 ILE102 TYR103 ALA104 SER105 TYR106 TYR107 GLU108 CYS109 GLY110 HIS111 GLY112 LEU113 SER114 THR115 GLY116 GLY117 TYR118 GLY119 TYR120 ASP121 SER122 TRP123 GLY124 GLN125 GLY126 THR127 GLN128 VAL129 THR130 VAL131 SER132 SER133
Unit 2 VAL2 GLN3 LEU4 GLN5 ALA6 SER7 GLY8 GLY9 GLY10 SER11 VAL12 GLN13 ALA14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 TYR27 THR28 ILE29 GLY30 PRO31 TYR32 CYS33 MET34 GLY35 TRP36 PHE37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLU44 ARG45 GLU46 GLY47 VAL48 ALA49 ALA50 ILE51 ASN52 MET53 GLY54 GLY55 GLY56 ILE57 THR58 TYR59 TYR60 ALA61 ASP62 SER63 VAL64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 GLN72 ASP73 ASN74 ALA75 LYS76 ASN77 THR78 VAL79 TYR80 LEU81 LEU82 MET83 ASN84 SER85 LEU86 GLU87 PRO88 GLU89 ASP90 THR91 ALA92 ILE93 TYR94 TYR95 CYS96 ALA97 ALA98 ASP99 SER100 THR101 ILE102 TYR103 ALA104 SER105 TYR106 TYR107 GLU108 CYS109 GLY110 HIS111 GLY112 LEU113 SER114 THR115 GLY116 GLY117 TYR118 GLY119 TYR120 ASP121 SER122 TRP123 GLY124 GLN125 GLY126 THR127 GLN128 VAL129 THR130 VAL131 SER132 SER133
Unit 3 LYS1 VAL2 PHE3 GLY4 ARG5 CYS6 GLU7 LEU8 ALA9 ALA10 ALA11 MET12 LYS13 ARG14 HIS15 GLY16 LEU17 ASP18 ASN19 TYR20 ARG21 GLY22 TYR23 SER24 LEU25 GLY26 ASN27 TRP28 VAL29 CYS30 ALA31 ALA32 LYS33 PHE34 GLU35 SER36 ASN37 PHE38 ASN39 THR40 GLN41 ALA42 THR43 ASN44 ARG45 ASN46 THR47 ASP48 GLY49 SER50 THR51 ASP52 TYR53 GLY54 ILE55 LEU56 GLN57 ILE58 ASN59 SER60 ARG61 TRP62 TRP63 CYS64 ASN65 ASP66 GLY67 ARG68 THR69 PRO70 GLY71 SER72 ARG73 ASN74 LEU75 CYS76 ASN77 ILE78 PRO79 CYS80 SER81 ALA82 LEU83 LEU84 SER85 SER86 ASP87 ILE88 THR89 ALA90 SER91 VAL92 ASN93 CYS94 ALA95 LYS96 LYS97 ILE98 VAL99 SER100 ASP101 GLY102 ASN103 GLY104 MET105 ASN106 ALA107 TRP108 VAL109 ALA110 TRP111 ARG112 ASN113 ARG114 CYS115 LYS116 GLY117 THR118 ASP119 VAL120 GLN121 ALA122 TRP123 ILE124 ARG125 GLY126 CYS127 ARG128 LEU129
Unit 4 LYS1 VAL2 PHE3 GLY4 ARG5 CYS6 GLU7 LEU8 ALA9 ALA10 ALA11 MET12 LYS13 ARG14 HIS15 GLY16 LEU17 ASP18 ASN19 TYR20 ARG21 GLY22 TYR23 SER24 LEU25 GLY26 ASN27 TRP28 VAL29 CYS30 ALA31 ALA32 LYS33 PHE34 GLU35 SER36 ASN37 PHE38 ASN39 THR40 GLN41 ALA42 THR43 ASN44 ARG45 ASN46 THR47 ASP48 GLY49 SER50 THR51 ASP52 TYR53 GLY54 ILE55 LEU56 GLN57 ILE58 ASN59 SER60 ARG61 TRP62 TRP63 CYS64 ASN65 ASP66 GLY67 ARG68 THR69 PRO70 GLY71 SER72 ARG73 ASN74 LEU75 CYS76 ASN77 ILE78 PRO79 CYS80 SER81 ALA82 LEU83 LEU84 SER85 SER86 ASP87 ILE88 THR89 ALA90 SER91 VAL92 ASN93 CYS94 ALA95 LYS96 LYS97 ILE98 VAL99 SER100 ASP101 GLY102 ASN103 GLY104 MET105 ASN106 ALA107 TRP108 VAL109 ALA110 TRP111 ARG112 ASN113 ARG114 CYS115 LYS116 GLY117 THR118 ASP119 VAL120 GLN121 ALA122 TRP123 ILE124 ARG125 GLY126 CYS127 ARG128 LEU129

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany