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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SPERMIDINE SYNTHASE IN COMPLEX WITH TRANSITION STATE ANALOGUE ADODATO
Keywords AMINOPROPYLTRANSFERASE, HOMO-TETRAMER, THERMOPHYLE, TRANSITION-STATE ANALOGUE, BETA-BARREL, STRUCTURAL GENOMICS PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1JQ3     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SPERMIDINE SYNTHASE  A 295 2392 0
2  Protein   SPERMIDINE SYNTHASE  B 286 2337 0
3  Protein   SPERMIDINE SYNTHASE  C 293 2383 0
4  Protein   SPERMIDINE SYNTHASE  D 293 2372 0
5  Ligand   SPERMIDINE SYNTHASE  A 1 0 29
6  Ligand   SPERMIDINE SYNTHASE  C 1 0 29
7  Ligand   SPERMIDINE SYNTHASE  D 1 0 29
8 Water     743 0 743
total       1913 9484 830

Proteins
Unit 1 ARG2 THR3 LEU4 LYS5 GLU6 LEU7 GLU8 ARG9 GLU10 LEU11 GLN12 PRO13 ARG14 GLN15 HIS16 LEU17 TRP18 TYR19 PHE20 GLU21 TYR22 TYR23 THR24 GLY25 ASN26 ASN27 VAL28 GLY29 LEU30 PHE31 MET32 LYS33 MET34 ASN35 ARG36 VAL37 ILE38 TYR39 SER40 GLY41 GLN42 SER43 ASP44 ILE45 GLN46 ARG47 ILE48 ASP49 ILE50 PHE51 GLU52 ASN53 PRO54 ASP55 LEU56 GLY57 VAL58 VAL59 PHE60 ALA61 LEU62 ASP63 GLY64 ILE65 THR66 MET67 THR68 THR69 GLU70 LYS71 ASP72 GLU73 PHE74 MET75 TYR76 HIS77 GLU78 MET79 LEU80 ALA81 HIS82 VAL83 PRO84 MET85 PHE86 LEU87 HIS88 PRO89 ASN90 PRO91 LYS92 LYS93 VAL94 LEU95 ILE96 ILE97 GLY98 GLY99 GLY100 ASP101 GLY102 GLY103 THR104 LEU105 ARG106 GLU107 VAL108 LEU109 LYS110 HIS111 ASP112 SER113 VAL114 GLU115 LYS116 ALA117 ILE118 LEU119 CYS120 GLU121 VAL122 ASP123 GLY124 LEU125 VAL126 ILE127 GLU128 ALA129 ALA130 ARG131 LYS132 TYR133 LEU134 LYS135 GLN136 THR137 SER138 CYS139 GLY140 PHE141 ASP142 ASP143 PRO144 ARG145 ALA146 GLU147 ILE148 VAL149 ILE150 ALA151 ASN152 GLY153 ALA154 GLU155 TYR156 VAL157 ARG158 LYS159 PHE160 LYS161 ASN162 GLU163 PHE164 ASP165 VAL166 ILE167 ILE168 ILE169 ASP170 SER171 THR172 ASP173 PRO174 THR175 ALA176 GLY177 GLN178 GLY179 GLY180 HIS181 LEU182 PHE183 THR184 GLU185 GLU186 PHE187 TYR188 GLN189 ALA190 CYS191 TYR192 ASP193 ALA194 LEU195 LYS196 GLU197 ASP198 GLY199 VAL200 PHE201 SER202 ALA203 GLU204 THR205 GLU206 ASP207 PRO208 PHE209 TYR210 ASP211 ILE212 GLY213 TRP214 PHE215 LYS216 LEU217 ALA218 TYR219 ARG220 ARG221 ILE222 SER223 LYS224 VAL225 PHE226 PRO227 ILE228 THR229 ARG230 VAL231 TYR232 LEU233 GLY234 PHE235 MET236 THR237 THR238 TYR239 PRO240 SER241 GLY242 MET243 TRP244 SER245 TYR246 THR247 PHE248 ALA249 SER250 LYS251 GLY252 ILE253 ASP254 PRO255 ILE256 LYS257 ASP258 PHE259 ASP260 PRO261 GLU262 LYS263 VAL264 ARG265 LYS266 PHE267 ASN268 LYS269 GLU270 LEU271 LYS272 TYR273 TYR274 ASN275 GLU276 GLU277 VAL278 HIS279 VAL280 ALA281 SER282 PHE283 ALA284 LEU285 PRO286 ASN287 PHE288 VAL289 LYS290 LYS291 GLU292 LEU293 GLY294 LEU295 MET296
Unit 2 ARG2 THR3 LEU4 LYS5 GLU6 LEU7 GLU8 ARG9 GLU10 LEU11 GLN12 PRO13 ARG14 GLN15 HIS16 LEU17 TRP18 TYR19 PHE20 GLU21 TYR22 TYR23 THR24 GLY25 ASN26 ASN27 VAL28 GLY29 LEU30 PHE31 MET32 LYS33 MET34 ASN35 ARG36 VAL37 ILE38 TYR39 SER40 GLY41 GLN42 SER43 ASP44 ILE45 GLN46 ARG47 ILE48 ASP49 ILE50 PHE51 GLU52 ASN53 PRO54 ASP55 LEU56 GLY57 VAL58 VAL59 PHE60 ALA61 LEU62 ASP63 GLY64 ILE65 THR66 MET67 THR68 THR69 GLU70 LYS71 ASP72 GLU73 PHE74 MET75 TYR76 HIS77 GLU78 MET79 LEU80 ALA81 HIS82 VAL83 PRO84 MET85 PHE86 LEU87 HIS88 PRO89 ASN90 PRO91 LYS92 LYS93 VAL94 LEU95 ILE96 ILE97 GLY98 GLY99 GLY100 ASP101 GLY102 GLY103 THR104 LEU105 ARG106 GLU107 VAL108 LEU109 LYS110 HIS111 ASP112 SER113 VAL114 GLU115 LYS116 ALA117 ILE118 LEU119 CYS120 GLU121 VAL122 ASP123 GLY124 LEU125 VAL126 ILE127 GLU128 ALA129 ALA130 ARG131 LYS132 TYR133 LEU134 LYS135 GLN136 THR137 SER138 CYS139 GLY140 PHE141 ASP142 ASP143 PRO144 ARG145 ALA146 GLU147 ILE148 VAL149 ILE150 ALA151 ASN152 GLY153 ALA154 GLU155 TYR156 VAL157 ARG158 LYS159 PHE160 LYS161 ASN162 GLU163 PHE164 ASP165 VAL166 ILE167 ILE168 ILE169 ASP170 SER171 HIS181 LEU182 PHE183 THR184 GLU185 GLU186 PHE187 TYR188 GLN189 ALA190 CYS191 TYR192 ASP193 ALA194 LEU195 LYS196 GLU197 ASP198 GLY199 VAL200 PHE201 SER202 ALA203 GLU204 THR205 GLU206 ASP207 PRO208 PHE209 TYR210 ASP211 ILE212 GLY213 TRP214 PHE215 LYS216 LEU217 ALA218 TYR219 ARG220 ARG221 ILE222 SER223 LYS224 VAL225 PHE226 PRO227 ILE228 THR229 ARG230 VAL231 TYR232 LEU233 GLY234 PHE235 MET236 THR237 THR238 TYR239 PRO240 SER241 GLY242 MET243 TRP244 SER245 TYR246 THR247 PHE248 ALA249 SER250 LYS251 GLY252 ILE253 ASP254 PRO255 ILE256 LYS257 ASP258 PHE259 ASP260 PRO261 GLU262 LYS263 VAL264 ARG265 LYS266 PHE267 ASN268 LYS269 GLU270 LEU271 LYS272 TYR273 TYR274 ASN275 GLU276 GLU277 VAL278 HIS279 VAL280 ALA281 SER282 PHE283 ALA284 LEU285 PRO286 ASN287 PHE288 VAL289 LYS290 LYS291 GLU292 LEU293 GLY294 LEU295 MET296
Unit 3 LEU4 LYS5 GLU6 LEU7 GLU8 ARG9 GLU10 LEU11 GLN12 PRO13 ARG14 GLN15 HIS16 LEU17 TRP18 TYR19 PHE20 GLU21 TYR22 TYR23 THR24 GLY25 ASN26 ASN27 VAL28 GLY29 LEU30 PHE31 MET32 LYS33 MET34 ASN35 ARG36 VAL37 ILE38 TYR39 SER40 GLY41 GLN42 SER43 ASP44 ILE45 GLN46 ARG47 ILE48 ASP49 ILE50 PHE51 GLU52 ASN53 PRO54 ASP55 LEU56 GLY57 VAL58 VAL59 PHE60 ALA61 LEU62 ASP63 GLY64 ILE65 THR66 MET67 THR68 THR69 GLU70 LYS71 ASP72 GLU73 PHE74 MET75 TYR76 HIS77 GLU78 MET79 LEU80 ALA81 HIS82 VAL83 PRO84 MET85 PHE86 LEU87 HIS88 PRO89 ASN90 PRO91 LYS92 LYS93 VAL94 LEU95 ILE96 ILE97 GLY98 GLY99 GLY100 ASP101 GLY102 GLY103 THR104 LEU105 ARG106 GLU107 VAL108 LEU109 LYS110 HIS111 ASP112 SER113 VAL114 GLU115 LYS116 ALA117 ILE118 LEU119 CYS120 GLU121 VAL122 ASP123 GLY124 LEU125 VAL126 ILE127 GLU128 ALA129 ALA130 ARG131 LYS132 TYR133 LEU134 LYS135 GLN136 THR137 SER138 CYS139 GLY140 PHE141 ASP142 ASP143 PRO144 ARG145 ALA146 GLU147 ILE148 VAL149 ILE150 ALA151 ASN152 GLY153 ALA154 GLU155 TYR156 VAL157 ARG158 LYS159 PHE160 LYS161 ASN162 GLU163 PHE164 ASP165 VAL166 ILE167 ILE168 ILE169 ASP170 SER171 THR172 ASP173 PRO174 THR175 ALA176 GLY177 GLN178 GLY179 GLY180 HIS181 LEU182 PHE183 THR184 GLU185 GLU186 PHE187 TYR188 GLN189 ALA190 CYS191 TYR192 ASP193 ALA194 LEU195 LYS196 GLU197 ASP198 GLY199 VAL200 PHE201 SER202 ALA203 GLU204 THR205 GLU206 ASP207 PRO208 PHE209 TYR210 ASP211 ILE212 GLY213 TRP214 PHE215 LYS216 LEU217 ALA218 TYR219 ARG220 ARG221 ILE222 SER223 LYS224 VAL225 PHE226 PRO227 ILE228 THR229 ARG230 VAL231 TYR232 LEU233 GLY234 PHE235 MET236 THR237 THR238 TYR239 PRO240 SER241 GLY242 MET243 TRP244 SER245 TYR246 THR247 PHE248 ALA249 SER250 LYS251 GLY252 ILE253 ASP254 PRO255 ILE256 LYS257 ASP258 PHE259 ASP260 PRO261 GLU262 LYS263 VAL264 ARG265 LYS266 PHE267 ASN268 LYS269 GLU270 LEU271 LYS272 TYR273 TYR274 ASN275 GLU276 GLU277 VAL278 HIS279 VAL280 ALA281 SER282 PHE283 ALA284 LEU285 PRO286 ASN287 PHE288 VAL289 LYS290 LYS291 GLU292 LEU293 GLY294 LEU295 MET296
Unit 4 LEU4 LYS5 GLU6 LEU7 GLU8 ARG9 GLU10 LEU11 GLN12 PRO13 ARG14 GLN15 HIS16 LEU17 TRP18 TYR19 PHE20 GLU21 TYR22 TYR23 THR24 GLY25 ASN26 ASN27 VAL28 GLY29 LEU30 PHE31 MET32 LYS33 MET34 ASN35 ARG36 VAL37 ILE38 TYR39 SER40 GLY41 GLN42 SER43 ASP44 ILE45 GLN46 ARG47 ILE48 ASP49 ILE50 PHE51 GLU52 ASN53 PRO54 ASP55 LEU56 GLY57 VAL58 VAL59 PHE60 ALA61 LEU62 ASP63 GLY64 ILE65 THR66 MET67 THR68 THR69 GLU70 LYS71 ASP72 GLU73 PHE74 MET75 TYR76 HIS77 GLU78 MET79 LEU80 ALA81 HIS82 VAL83 PRO84 MET85 PHE86 LEU87 HIS88 PRO89 ASN90 PRO91 LYS92 LYS93 VAL94 LEU95 ILE96 ILE97 GLY98 GLY99 GLY100 ASP101 GLY102 GLY103 THR104 LEU105 ARG106 GLU107 VAL108 LEU109 LYS110 HIS111 ASP112 SER113 VAL114 GLU115 LYS116 ALA117 ILE118 LEU119 CYS120 GLU121 VAL122 ASP123 GLY124 LEU125 VAL126 ILE127 GLU128 ALA129 ALA130 ARG131 LYS132 TYR133 LEU134 LYS135 GLN136 THR137 SER138 CYS139 GLY140 PHE141 ASP142 ASP143 PRO144 ARG145 ALA146 GLU147 ILE148 VAL149 ILE150 ALA151 ASN152 GLY153 ALA154 GLU155 TYR156 VAL157 ARG158 LYS159 PHE160 LYS161 ASN162 GLU163 PHE164 ASP165 VAL166 ILE167 ILE168 ILE169 ASP170 SER171 THR172 ASP173 PRO174 THR175 ALA176 GLY177 GLN178 GLY179 GLY180 HIS181 LEU182 PHE183 THR184 GLU185 GLU186 PHE187 TYR188 GLN189 ALA190 CYS191 TYR192 ASP193 ALA194 LEU195 LYS196 GLU197 ASP198 GLY199 VAL200 PHE201 SER202 ALA203 GLU204 THR205 GLU206 ASP207 PRO208 PHE209 TYR210 ASP211 ILE212 GLY213 TRP214 PHE215 LYS216 LEU217 ALA218 TYR219 ARG220 ARG221 ILE222 SER223 LYS224 VAL225 PHE226 PRO227 ILE228 THR229 ARG230 VAL231 TYR232 LEU233 GLY234 PHE235 MET236 THR237 THR238 TYR239 PRO240 SER241 GLY242 MET243 TRP244 SER245 TYR246 THR247 PHE248 ALA249 SER250 LYS251 GLY252 ILE253 ASP254 PRO255 ILE256 LYS257 ASP258 PHE259 ASP260 PRO261 GLU262 LYS263 VAL264 ARG265 LYS266 PHE267 ASN268 LYS269 GLU270 LEU271 LYS272 TYR273 TYR274 ASN275 GLU276 GLU277 VAL278 HIS279 VAL280 ALA281 SER282 PHE283 ALA284 LEU285 PRO286 ASN287 PHE288 VAL289 LYS290 LYS291 GLU292 LEU293 GLY294 LEU295 MET296

Ligands
Unit 5 AAT800
Unit 6 AAT801
Unit 7 AAT802

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany