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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MANGANESE CATALASE FROM LACTOBACILLUS P COMPLEXED WITH AZIDE
Keywords HEXAMER, CATALASE DIMANGANESE, METALLOENZYME, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1JKV     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PSEUDOCATALASE  A 266 2084 0
2  Protein   PSEUDOCATALASE  B 266 2084 0
3  Protein   PSEUDOCATALASE  C 266 2084 0
4  Protein   PSEUDOCATALASE  D 266 2084 0
5  Protein   PSEUDOCATALASE  E 266 2084 0
6  Protein   PSEUDOCATALASE  F 266 2084 0
7  Ligand   PSEUDOCATALASE  A 10 0 21
8  Ligand   PSEUDOCATALASE  B 8 0 13
9  Ligand   PSEUDOCATALASE  C 10 0 21
10  Ligand   PSEUDOCATALASE  D 9 0 17
11  Ligand   PSEUDOCATALASE  E 10 0 21
12  Ligand   PSEUDOCATALASE  F 10 0 21
13 Water     1534 0 1534
total       3187 12504 1648

Proteins
Unit 1 MET1 PHE2 LYS3 HIS4 THR5 ARG6 LYS7 LEU8 GLN9 TYR10 ASN11 ALA12 LYS13 PRO14 ASP15 ARG16 SER17 ASP18 PRO19 ILE20 MET21 ALA22 ARG23 ARG24 LEU25 GLN26 GLU27 SER28 LEU29 GLY30 GLY31 GLN32 TRP33 GLY34 GLU35 THR36 THR37 GLY38 MET39 MET40 SER41 TYR42 LEU43 SER44 GLN45 GLY46 TRP47 ALA48 SER49 THR50 GLY51 ALA52 GLU53 LYS54 TYR55 LYS56 ASP57 LEU58 LEU59 LEU60 ASP61 THR62 GLY63 THR64 GLU65 GLU66 MET67 ALA68 HIS69 VAL70 GLU71 MET72 ILE73 SER74 THR75 MET76 ILE77 GLY78 TYR79 LEU80 LEU81 GLU82 ASP83 ALA84 PRO85 PHE86 GLY87 PRO88 GLU89 ASP90 LEU91 LYS92 ARG93 ASP94 PRO95 SER96 LEU97 ALA98 THR99 THR100 MET101 ALA102 GLY103 MET104 ASP105 PRO106 GLU107 HIS108 SER109 LEU110 VAL111 HIS112 GLY113 LEU114 ASN115 ALA116 SER117 LEU118 ASN119 ASN120 PRO121 ASN122 GLY123 ALA124 ALA125 TRP126 ASN127 ALA128 GLY129 TYR130 VAL131 THR132 SER133 SER134 GLY135 ASN136 LEU137 VAL138 ALA139 ASP140 MET141 ARG142 PHE143 ASN144 VAL145 VAL146 ARG147 GLU148 SER149 GLU150 ALA151 ARG152 LEU153 GLN154 VAL155 SER156 ARG157 LEU158 TYR159 SER160 MET161 THR162 GLU163 ASP164 GLU165 GLY166 VAL167 ARG168 ASP169 MET170 LEU171 LYS172 PHE173 LEU174 LEU175 ALA176 ARG177 GLU178 THR179 GLN180 HIS181 GLN182 LEU183 GLN184 PHE185 MET186 LYS187 ALA188 GLN189 GLU190 GLU191 LEU192 GLU193 GLU194 LYS195 TYR196 GLY197 ILE198 ILE199 VAL200 PRO201 GLY202 ASP203 MET204 LYS205 GLU206 ILE207 GLU208 HIS209 SER210 GLU211 PHE212 SER213 HIS214 VAL215 LEU216 MET217 ASN218 PHE219 SER220 ASP221 GLY222 ASP223 GLY224 SER225 LYS226 ALA227 PHE228 GLU229 GLY230 GLN231 VAL232 ALA233 LYS234 ASP235 GLY236 GLU237 LYS238 PHE239 THR240 TYR241 GLN242 GLU243 ASN244 PRO245 GLU246 ALA247 MET248 GLY249 GLY250 ILE251 PRO252 HIS253 ILE254 LYS255 PRO256 GLY257 ASP258 PRO259 ARG260 LEU261 HIS262 ASN263 HIS264 GLN265 GLY266
Unit 2 MET1 PHE2 LYS3 HIS4 THR5 ARG6 LYS7 LEU8 GLN9 TYR10 ASN11 ALA12 LYS13 PRO14 ASP15 ARG16 SER17 ASP18 PRO19 ILE20 MET21 ALA22 ARG23 ARG24 LEU25 GLN26 GLU27 SER28 LEU29 GLY30 GLY31 GLN32 TRP33 GLY34 GLU35 THR36 THR37 GLY38 MET39 MET40 SER41 TYR42 LEU43 SER44 GLN45 GLY46 TRP47 ALA48 SER49 THR50 GLY51 ALA52 GLU53 LYS54 TYR55 LYS56 ASP57 LEU58 LEU59 LEU60 ASP61 THR62 GLY63 THR64 GLU65 GLU66 MET67 ALA68 HIS69 VAL70 GLU71 MET72 ILE73 SER74 THR75 MET76 ILE77 GLY78 TYR79 LEU80 LEU81 GLU82 ASP83 ALA84 PRO85 PHE86 GLY87 PRO88 GLU89 ASP90 LEU91 LYS92 ARG93 ASP94 PRO95 SER96 LEU97 ALA98 THR99 THR100 MET101 ALA102 GLY103 MET104 ASP105 PRO106 GLU107 HIS108 SER109 LEU110 VAL111 HIS112 GLY113 LEU114 ASN115 ALA116 SER117 LEU118 ASN119 ASN120 PRO121 ASN122 GLY123 ALA124 ALA125 TRP126 ASN127 ALA128 GLY129 TYR130 VAL131 THR132 SER133 SER134 GLY135 ASN136 LEU137 VAL138 ALA139 ASP140 MET141 ARG142 PHE143 ASN144 VAL145 VAL146 ARG147 GLU148 SER149 GLU150 ALA151 ARG152 LEU153 GLN154 VAL155 SER156 ARG157 LEU158 TYR159 SER160 MET161 THR162 GLU163 ASP164 GLU165 GLY166 VAL167 ARG168 ASP169 MET170 LEU171 LYS172 PHE173 LEU174 LEU175 ALA176 ARG177 GLU178 THR179 GLN180 HIS181 GLN182 LEU183 GLN184 PHE185 MET186 LYS187 ALA188 GLN189 GLU190 GLU191 LEU192 GLU193 GLU194 LYS195 TYR196 GLY197 ILE198 ILE199 VAL200 PRO201 GLY202 ASP203 MET204 LYS205 GLU206 ILE207 GLU208 HIS209 SER210 GLU211 PHE212 SER213 HIS214 VAL215 LEU216 MET217 ASN218 PHE219 SER220 ASP221 GLY222 ASP223 GLY224 SER225 LYS226 ALA227 PHE228 GLU229 GLY230 GLN231 VAL232 ALA233 LYS234 ASP235 GLY236 GLU237 LYS238 PHE239 THR240 TYR241 GLN242 GLU243 ASN244 PRO245 GLU246 ALA247 MET248 GLY249 GLY250 ILE251 PRO252 HIS253 ILE254 LYS255 PRO256 GLY257 ASP258 PRO259 ARG260 LEU261 HIS262 ASN263 HIS264 GLN265 GLY266
Unit 3 MET1 PHE2 LYS3 HIS4 THR5 ARG6 LYS7 LEU8 GLN9 TYR10 ASN11 ALA12 LYS13 PRO14 ASP15 ARG16 SER17 ASP18 PRO19 ILE20 MET21 ALA22 ARG23 ARG24 LEU25 GLN26 GLU27 SER28 LEU29 GLY30 GLY31 GLN32 TRP33 GLY34 GLU35 THR36 THR37 GLY38 MET39 MET40 SER41 TYR42 LEU43 SER44 GLN45 GLY46 TRP47 ALA48 SER49 THR50 GLY51 ALA52 GLU53 LYS54 TYR55 LYS56 ASP57 LEU58 LEU59 LEU60 ASP61 THR62 GLY63 THR64 GLU65 GLU66 MET67 ALA68 HIS69 VAL70 GLU71 MET72 ILE73 SER74 THR75 MET76 ILE77 GLY78 TYR79 LEU80 LEU81 GLU82 ASP83 ALA84 PRO85 PHE86 GLY87 PRO88 GLU89 ASP90 LEU91 LYS92 ARG93 ASP94 PRO95 SER96 LEU97 ALA98 THR99 THR100 MET101 ALA102 GLY103 MET104 ASP105 PRO106 GLU107 HIS108 SER109 LEU110 VAL111 HIS112 GLY113 LEU114 ASN115 ALA116 SER117 LEU118 ASN119 ASN120 PRO121 ASN122 GLY123 ALA124 ALA125 TRP126 ASN127 ALA128 GLY129 TYR130 VAL131 THR132 SER133 SER134 GLY135 ASN136 LEU137 VAL138 ALA139 ASP140 MET141 ARG142 PHE143 ASN144 VAL145 VAL146 ARG147 GLU148 SER149 GLU150 ALA151 ARG152 LEU153 GLN154 VAL155 SER156 ARG157 LEU158 TYR159 SER160 MET161 THR162 GLU163 ASP164 GLU165 GLY166 VAL167 ARG168 ASP169 MET170 LEU171 LYS172 PHE173 LEU174 LEU175 ALA176 ARG177 GLU178 THR179 GLN180 HIS181 GLN182 LEU183 GLN184 PHE185 MET186 LYS187 ALA188 GLN189 GLU190 GLU191 LEU192 GLU193 GLU194 LYS195 TYR196 GLY197 ILE198 ILE199 VAL200 PRO201 GLY202 ASP203 MET204 LYS205 GLU206 ILE207 GLU208 HIS209 SER210 GLU211 PHE212 SER213 HIS214 VAL215 LEU216 MET217 ASN218 PHE219 SER220 ASP221 GLY222 ASP223 GLY224 SER225 LYS226 ALA227 PHE228 GLU229 GLY230 GLN231 VAL232 ALA233 LYS234 ASP235 GLY236 GLU237 LYS238 PHE239 THR240 TYR241 GLN242 GLU243 ASN244 PRO245 GLU246 ALA247 MET248 GLY249 GLY250 ILE251 PRO252 HIS253 ILE254 LYS255 PRO256 GLY257 ASP258 PRO259 ARG260 LEU261 HIS262 ASN263 HIS264 GLN265 GLY266
Unit 4 MET1 PHE2 LYS3 HIS4 THR5 ARG6 LYS7 LEU8 GLN9 TYR10 ASN11 ALA12 LYS13 PRO14 ASP15 ARG16 SER17 ASP18 PRO19 ILE20 MET21 ALA22 ARG23 ARG24 LEU25 GLN26 GLU27 SER28 LEU29 GLY30 GLY31 GLN32 TRP33 GLY34 GLU35 THR36 THR37 GLY38 MET39 MET40 SER41 TYR42 LEU43 SER44 GLN45 GLY46 TRP47 ALA48 SER49 THR50 GLY51 ALA52 GLU53 LYS54 TYR55 LYS56 ASP57 LEU58 LEU59 LEU60 ASP61 THR62 GLY63 THR64 GLU65 GLU66 MET67 ALA68 HIS69 VAL70 GLU71 MET72 ILE73 SER74 THR75 MET76 ILE77 GLY78 TYR79 LEU80 LEU81 GLU82 ASP83 ALA84 PRO85 PHE86 GLY87 PRO88 GLU89 ASP90 LEU91 LYS92 ARG93 ASP94 PRO95 SER96 LEU97 ALA98 THR99 THR100 MET101 ALA102 GLY103 MET104 ASP105 PRO106 GLU107 HIS108 SER109 LEU110 VAL111 HIS112 GLY113 LEU114 ASN115 ALA116 SER117 LEU118 ASN119 ASN120 PRO121 ASN122 GLY123 ALA124 ALA125 TRP126 ASN127 ALA128 GLY129 TYR130 VAL131 THR132 SER133 SER134 GLY135 ASN136 LEU137 VAL138 ALA139 ASP140 MET141 ARG142 PHE143 ASN144 VAL145 VAL146 ARG147 GLU148 SER149 GLU150 ALA151 ARG152 LEU153 GLN154 VAL155 SER156 ARG157 LEU158 TYR159 SER160 MET161 THR162 GLU163 ASP164 GLU165 GLY166 VAL167 ARG168 ASP169 MET170 LEU171 LYS172 PHE173 LEU174 LEU175 ALA176 ARG177 GLU178 THR179 GLN180 HIS181 GLN182 LEU183 GLN184 PHE185 MET186 LYS187 ALA188 GLN189 GLU190 GLU191 LEU192 GLU193 GLU194 LYS195 TYR196 GLY197 ILE198 ILE199 VAL200 PRO201 GLY202 ASP203 MET204 LYS205 GLU206 ILE207 GLU208 HIS209 SER210 GLU211 PHE212 SER213 HIS214 VAL215 LEU216 MET217 ASN218 PHE219 SER220 ASP221 GLY222 ASP223 GLY224 SER225 LYS226 ALA227 PHE228 GLU229 GLY230 GLN231 VAL232 ALA233 LYS234 ASP235 GLY236 GLU237 LYS238 PHE239 THR240 TYR241 GLN242 GLU243 ASN244 PRO245 GLU246 ALA247 MET248 GLY249 GLY250 ILE251 PRO252 HIS253 ILE254 LYS255 PRO256 GLY257 ASP258 PRO259 ARG260 LEU261 HIS262 ASN263 HIS264 GLN265 GLY266
Unit 5 MET1 PHE2 LYS3 HIS4 THR5 ARG6 LYS7 LEU8 GLN9 TYR10 ASN11 ALA12 LYS13 PRO14 ASP15 ARG16 SER17 ASP18 PRO19 ILE20 MET21 ALA22 ARG23 ARG24 LEU25 GLN26 GLU27 SER28 LEU29 GLY30 GLY31 GLN32 TRP33 GLY34 GLU35 THR36 THR37 GLY38 MET39 MET40 SER41 TYR42 LEU43 SER44 GLN45 GLY46 TRP47 ALA48 SER49 THR50 GLY51 ALA52 GLU53 LYS54 TYR55 LYS56 ASP57 LEU58 LEU59 LEU60 ASP61 THR62 GLY63 THR64 GLU65 GLU66 MET67 ALA68 HIS69 VAL70 GLU71 MET72 ILE73 SER74 THR75 MET76 ILE77 GLY78 TYR79 LEU80 LEU81 GLU82 ASP83 ALA84 PRO85 PHE86 GLY87 PRO88 GLU89 ASP90 LEU91 LYS92 ARG93 ASP94 PRO95 SER96 LEU97 ALA98 THR99 THR100 MET101 ALA102 GLY103 MET104 ASP105 PRO106 GLU107 HIS108 SER109 LEU110 VAL111 HIS112 GLY113 LEU114 ASN115 ALA116 SER117 LEU118 ASN119 ASN120 PRO121 ASN122 GLY123 ALA124 ALA125 TRP126 ASN127 ALA128 GLY129 TYR130 VAL131 THR132 SER133 SER134 GLY135 ASN136 LEU137 VAL138 ALA139 ASP140 MET141 ARG142 PHE143 ASN144 VAL145 VAL146 ARG147 GLU148 SER149 GLU150 ALA151 ARG152 LEU153 GLN154 VAL155 SER156 ARG157 LEU158 TYR159 SER160 MET161 THR162 GLU163 ASP164 GLU165 GLY166 VAL167 ARG168 ASP169 MET170 LEU171 LYS172 PHE173 LEU174 LEU175 ALA176 ARG177 GLU178 THR179 GLN180 HIS181 GLN182 LEU183 GLN184 PHE185 MET186 LYS187 ALA188 GLN189 GLU190 GLU191 LEU192 GLU193 GLU194 LYS195 TYR196 GLY197 ILE198 ILE199 VAL200 PRO201 GLY202 ASP203 MET204 LYS205 GLU206 ILE207 GLU208 HIS209 SER210 GLU211 PHE212 SER213 HIS214 VAL215 LEU216 MET217 ASN218 PHE219 SER220 ASP221 GLY222 ASP223 GLY224 SER225 LYS226 ALA227 PHE228 GLU229 GLY230 GLN231 VAL232 ALA233 LYS234 ASP235 GLY236 GLU237 LYS238 PHE239 THR240 TYR241 GLN242 GLU243 ASN244 PRO245 GLU246 ALA247 MET248 GLY249 GLY250 ILE251 PRO252 HIS253 ILE254 LYS255 PRO256 GLY257 ASP258 PRO259 ARG260 LEU261 HIS262 ASN263 HIS264 GLN265 GLY266
Unit 6 MET1 PHE2 LYS3 HIS4 THR5 ARG6 LYS7 LEU8 GLN9 TYR10 ASN11 ALA12 LYS13 PRO14 ASP15 ARG16 SER17 ASP18 PRO19 ILE20 MET21 ALA22 ARG23 ARG24 LEU25 GLN26 GLU27 SER28 LEU29 GLY30 GLY31 GLN32 TRP33 GLY34 GLU35 THR36 THR37 GLY38 MET39 MET40 SER41 TYR42 LEU43 SER44 GLN45 GLY46 TRP47 ALA48 SER49 THR50 GLY51 ALA52 GLU53 LYS54 TYR55 LYS56 ASP57 LEU58 LEU59 LEU60 ASP61 THR62 GLY63 THR64 GLU65 GLU66 MET67 ALA68 HIS69 VAL70 GLU71 MET72 ILE73 SER74 THR75 MET76 ILE77 GLY78 TYR79 LEU80 LEU81 GLU82 ASP83 ALA84 PRO85 PHE86 GLY87 PRO88 GLU89 ASP90 LEU91 LYS92 ARG93 ASP94 PRO95 SER96 LEU97 ALA98 THR99 THR100 MET101 ALA102 GLY103 MET104 ASP105 PRO106 GLU107 HIS108 SER109 LEU110 VAL111 HIS112 GLY113 LEU114 ASN115 ALA116 SER117 LEU118 ASN119 ASN120 PRO121 ASN122 GLY123 ALA124 ALA125 TRP126 ASN127 ALA128 GLY129 TYR130 VAL131 THR132 SER133 SER134 GLY135 ASN136 LEU137 VAL138 ALA139 ASP140 MET141 ARG142 PHE143 ASN144 VAL145 VAL146 ARG147 GLU148 SER149 GLU150 ALA151 ARG152 LEU153 GLN154 VAL155 SER156 ARG157 LEU158 TYR159 SER160 MET161 THR162 GLU163 ASP164 GLU165 GLY166 VAL167 ARG168 ASP169 MET170 LEU171 LYS172 PHE173 LEU174 LEU175 ALA176 ARG177 GLU178 THR179 GLN180 HIS181 GLN182 LEU183 GLN184 PHE185 MET186 LYS187 ALA188 GLN189 GLU190 GLU191 LEU192 GLU193 GLU194 LYS195 TYR196 GLY197 ILE198 ILE199 VAL200 PRO201 GLY202 ASP203 MET204 LYS205 GLU206 ILE207 GLU208 HIS209 SER210 GLU211 PHE212 SER213 HIS214 VAL215 LEU216 MET217 ASN218 PHE219 SER220 ASP221 GLY222 ASP223 GLY224 SER225 LYS226 ALA227 PHE228 GLU229 GLY230 GLN231 VAL232 ALA233 LYS234 ASP235 GLY236 GLU237 LYS238 PHE239 THR240 TYR241 GLN242 GLU243 ASN244 PRO245 GLU246 ALA247 MET248 GLY249 GLY250 ILE251 PRO252 HIS253 ILE254 LYS255 PRO256 GLY257 ASP258 PRO259 ARG260 LEU261 HIS262 ASN263 HIS264 GLN265 GLY266

Ligands
Unit 7 MN34267 MN34268 OH4269 OH4270 OH4271 CA4272 AZI4281 EDO4283 EDO4284 EDO5284
Unit 8 MN35267 MN35268 OH5269 OH5270 OH5271 CA5272 AZI5281 EDO5283
Unit 9 MN36267 MN36268 OH6269 OH6270 OH6271 CA6272 AZI6281 EDO6283 EDO6284 EDO6285
Unit 10 MN37267 MN37268 OH7269 OH7270 OH7271 CA7272 AZI7281 EDO7283 EDO7284
Unit 11 EDO7285 MN38267 MN38268 OH8269 OH8270 OH8271 CA8272 AZI8281 EDO8283 EDO8284
Unit 12 EDO4285 MN39267 MN39268 OH9269 OH9270 OH9271 CA9272 AZI9281 EDO9283 EDO9284

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany