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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF COLICIN E3 IN COMPLEX WITH ITS IMMUNITY
Keywords TRANSLOCATION DOMAIN IS A BETA-JELLYROLL, THE RECEPTOR-BINDI IS A COILED COIL, THE RNASE DOMAIN IS A SIX-STRANDED ANTIPA BETA-SHEET. THE IMMUNITY PROTEIN IS A FOUR-STRANDED ANTIPAR BETA SHEET FLANKED BY 3 HELICES ON ONE SIDE OF THE SHEET, R INHIBITOR, HYDROLASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1JCH     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   COLICIN E3  A 468 3570 0
2  Protein   COLICIN E3 IMMUNITY PROTEIN  B 84 693 0
3  Protein   COLICIN E3  C 468 3570 0
4  Protein   COLICIN E3 IMMUNITY PROTEIN  D 84 693 0
5  Ligand   COLICIN E3  A 3 0 32
6  Ligand   COLICIN E3 IMMUNITY PROTEIN  B 1 0 6
7  Ligand   COLICIN E3  C 3 0 32
8  Ligand   COLICIN E3 IMMUNITY PROTEIN  D 1 0 6
9 Water     396 0 396
total       1508 8526 472

Proteins
Unit 1 VAL84 ALA85 ALA86 PRO87 VAL88 ALA89 PHE90 GLY91 PHE92 PRO93 ALA94 LEU95 SER96 THR97 PRO98 GLY99 ALA100 GLY101 GLY102 LEU103 ALA104 VAL105 SER106 ILE107 SER108 ALA109 GLY110 ALA111 LEU112 SER113 ALA114 ALA115 ILE116 ALA117 ASP118 ILE119 MET120 ALA121 ALA122 LEU123 LYS124 GLY125 PRO126 PHE127 LYS128 PHE129 GLY130 LEU131 TRP132 GLY133 VAL134 ALA135 LEU136 TYR137 GLY138 VAL139 LEU140 PRO141 SER142 GLN143 ILE144 ALA145 LYS146 ASP147 ASP148 PRO149 ASN150 MET151 MET152 SER153 LYS154 ILE155 VAL156 THR157 SER158 LEU159 PRO160 ALA161 ASP162 ASP163 ILE164 THR165 GLU166 SER167 PRO168 VAL169 SER170 SER171 LEU172 PRO173 LEU174 ASP175 LYS176 ALA177 THR178 VAL179 ASN180 VAL181 ASN182 VAL183 ARG184 VAL185 VAL186 ASP187 ASP188 VAL189 LYS190 ASP191 GLU192 ARG193 GLN194 ASN195 ILE196 SER197 VAL198 VAL199 SER200 GLY201 VAL202 PRO203 MET204 SER205 VAL206 PRO207 VAL208 VAL209 ASP210 ALA211 LYS212 PRO213 THR214 GLU215 ARG216 PRO217 GLY218 VAL219 PHE220 THR221 ALA222 SER223 ILE224 PRO225 GLY226 ALA227 PRO228 VAL229 LEU230 ASN231 ILE232 SER233 VAL234 ASN235 ASN236 SER237 THR238 PRO239 ALA240 VAL241 GLN242 THR243 LEU244 SER245 PRO246 GLY247 VAL248 THR249 ASN250 ASN251 THR252 ASP253 LYS254 ASP255 VAL256 ARG257 PRO258 ALA259 PHE260 GLY261 THR262 GLN263 GLY264 GLY265 ASN266 THR267 ARG268 ASP269 ALA270 VAL271 ILE272 ARG273 PHE274 PRO275 LYS276 ASP277 SER278 GLY279 HIS280 ASN281 ALA282 VAL283 TYR284 VAL285 SER286 VAL287 SER288 ASP289 VAL290 LEU291 SER292 PRO293 ASP294 GLN295 VAL296 LYS297 GLN298 ARG299 GLN300 ASP301 GLU302 GLU303 ASN304 ARG305 ARG306 GLN307 GLN308 GLU309 TRP310 ASP311 ALA312 THR313 HIS314 PRO315 VAL316 GLU317 ALA318 ALA319 GLU320 ARG321 ASN322 TYR323 GLU324 ARG325 ALA326 ARG327 ALA328 GLU329 LEU330 ASN331 GLN332 ALA333 ASN334 GLU335 ASP336 VAL337 ALA338 ARG339 ASN340 GLN341 GLU342 ARG343 GLN344 ALA345 LYS346 ALA347 VAL348 GLN349 VAL350 TYR351 ASN352 SER353 ARG354 LYS355 SER356 GLU357 LEU358 ASP359 ALA360 ALA361 ASN362 LYS363 THR364 LEU365 ALA366 ASP367 ALA368 ILE369 ALA370 GLU371 ILE372 LYS373 GLN374 PHE375 ASN376 ARG377 PHE378 ALA379 HIS380 ASP381 PRO382 MET383 ALA384 GLY385 GLY386 HIS387 ARG388 MET389 TRP390 GLN391 MET392 ALA393 GLY394 LEU395 LYS396 ALA397 GLN398 ARG399 ALA400 GLN401 THR402 ASP403 VAL404 ASN405 ASN406 LYS407 GLN408 ALA409 ALA410 PHE411 ASP412 ALA413 ALA414 ALA415 LYS416 GLU417 LYS418 SER419 ASP420 ALA421 ASP422 ALA423 ALA424 LEU425 SER426 SER427 ALA428 MET429 GLU430 SER431 ARG432 LYS433 LYS434 LYS435 GLU436 ASP437 LYS438 LYS439 ARG440 SER441 ALA442 GLU443 ASN444 ASN445 LEU446 ASN447 ASP448 GLU449 LYS450 ASN451 LYS452 PRO453 ARG454 LYS455 GLY456 PHE457 LYS458 ASP459 TYR460 GLY461 HIS462 ASP463 TYR464 HIS465 PRO466 ALA467 PRO468 LYS469 THR470 GLU471 ASN472 ILE473 LYS474 GLY475 LEU476 GLY477 ASP478 LEU479 LYS480 PRO481 GLY482 ILE483 PRO484 LYS485 THR486 PRO487 LYS488 GLN489 ASN490 GLY491 GLY492 GLY493 LYS494 ARG495 LYS496 ARG497 TRP498 THR499 GLY500 ASP501 LYS502 GLY503 ARG504 LYS505 ILE506 TYR507 GLU508 TRP509 ASP510 SER511 GLN512 HIS513 GLY514 GLU515 LEU516 GLU517 GLY518 TYR519 ARG520 ALA521 SER522 ASP523 GLY524 GLN525 HIS526 LEU527 GLY528 SER529 PHE530 ASP531 PRO532 LYS533 THR534 GLY535 ASN536 GLN537 LEU538 LYS539 GLY540 PRO541 ASP542 PRO543 LYS544 ARG545 ASN546 ILE547 LYS548 LYS549 TYR550 LEU551
Unit 2 GLY1 LEU2 LYS3 LEU4 ASP5 LEU6 THR7 TRP8 PHE9 ASP10 LYS11 SER12 THR13 GLU14 ASP15 PHE16 LYS17 GLY18 GLU19 GLU20 TYR21 SER22 LYS23 ASP24 PHE25 GLY26 ASP27 ASP28 GLY29 SER30 VAL31 MET32 GLU33 SER34 LEU35 GLY36 VAL37 PRO38 PHE39 LYS40 ASP41 ASN42 VAL43 ASN44 ASN45 GLY46 CYS47 PHE48 ASP49 VAL50 ILE51 ALA52 GLU53 TRP54 VAL55 PRO56 LEU57 LEU58 GLN59 PRO60 TYR61 PHE62 ASN63 HIS64 GLN65 ILE66 ASP67 ILE68 SER69 ASP70 ASN71 GLU72 TYR73 PHE74 VAL75 SER76 PHE77 ASP78 TYR79 ARG80 ASP81 GLY82 ASP83 TRP84
Unit 3 VAL84 ALA85 ALA86 PRO87 VAL88 ALA89 PHE90 GLY91 PHE92 PRO93 ALA94 LEU95 SER96 THR97 PRO98 GLY99 ALA100 GLY101 GLY102 LEU103 ALA104 VAL105 SER106 ILE107 SER108 ALA109 GLY110 ALA111 LEU112 SER113 ALA114 ALA115 ILE116 ALA117 ASP118 ILE119 MET120 ALA121 ALA122 LEU123 LYS124 GLY125 PRO126 PHE127 LYS128 PHE129 GLY130 LEU131 TRP132 GLY133 VAL134 ALA135 LEU136 TYR137 GLY138 VAL139 LEU140 PRO141 SER142 GLN143 ILE144 ALA145 LYS146 ASP147 ASP148 PRO149 ASN150 MET151 MET152 SER153 LYS154 ILE155 VAL156 THR157 SER158 LEU159 PRO160 ALA161 ASP162 ASP163 ILE164 THR165 GLU166 SER167 PRO168 VAL169 SER170 SER171 LEU172 PRO173 LEU174 ASP175 LYS176 ALA177 THR178 VAL179 ASN180 VAL181 ASN182 VAL183 ARG184 VAL185 VAL186 ASP187 ASP188 VAL189 LYS190 ASP191 GLU192 ARG193 GLN194 ASN195 ILE196 SER197 VAL198 VAL199 SER200 GLY201 VAL202 PRO203 MET204 SER205 VAL206 PRO207 VAL208 VAL209 ASP210 ALA211 LYS212 PRO213 THR214 GLU215 ARG216 PRO217 GLY218 VAL219 PHE220 THR221 ALA222 SER223 ILE224 PRO225 GLY226 ALA227 PRO228 VAL229 LEU230 ASN231 ILE232 SER233 VAL234 ASN235 ASN236 SER237 THR238 PRO239 ALA240 VAL241 GLN242 THR243 LEU244 SER245 PRO246 GLY247 VAL248 THR249 ASN250 ASN251 THR252 ASP253 LYS254 ASP255 VAL256 ARG257 PRO258 ALA259 PHE260 GLY261 THR262 GLN263 GLY264 GLY265 ASN266 THR267 ARG268 ASP269 ALA270 VAL271 ILE272 ARG273 PHE274 PRO275 LYS276 ASP277 SER278 GLY279 HIS280 ASN281 ALA282 VAL283 TYR284 VAL285 SER286 VAL287 SER288 ASP289 VAL290 LEU291 SER292 PRO293 ASP294 GLN295 VAL296 LYS297 GLN298 ARG299 GLN300 ASP301 GLU302 GLU303 ASN304 ARG305 ARG306 GLN307 GLN308 GLU309 TRP310 ASP311 ALA312 THR313 HIS314 PRO315 VAL316 GLU317 ALA318 ALA319 GLU320 ARG321 ASN322 TYR323 GLU324 ARG325 ALA326 ARG327 ALA328 GLU329 LEU330 ASN331 GLN332 ALA333 ASN334 GLU335 ASP336 VAL337 ALA338 ARG339 ASN340 GLN341 GLU342 ARG343 GLN344 ALA345 LYS346 ALA347 VAL348 GLN349 VAL350 TYR351 ASN352 SER353 ARG354 LYS355 SER356 GLU357 LEU358 ASP359 ALA360 ALA361 ASN362 LYS363 THR364 LEU365 ALA366 ASP367 ALA368 ILE369 ALA370 GLU371 ILE372 LYS373 GLN374 PHE375 ASN376 ARG377 PHE378 ALA379 HIS380 ASP381 PRO382 MET383 ALA384 GLY385 GLY386 HIS387 ARG388 MET389 TRP390 GLN391 MET392 ALA393 GLY394 LEU395 LYS396 ALA397 GLN398 ARG399 ALA400 GLN401 THR402 ASP403 VAL404 ASN405 ASN406 LYS407 GLN408 ALA409 ALA410 PHE411 ASP412 ALA413 ALA414 ALA415 LYS416 GLU417 LYS418 SER419 ASP420 ALA421 ASP422 ALA423 ALA424 LEU425 SER426 SER427 ALA428 MET429 GLU430 SER431 ARG432 LYS433 LYS434 LYS435 GLU436 ASP437 LYS438 LYS439 ARG440 SER441 ALA442 GLU443 ASN444 ASN445 LEU446 ASN447 ASP448 GLU449 LYS450 ASN451 LYS452 PRO453 ARG454 LYS455 GLY456 PHE457 LYS458 ASP459 TYR460 GLY461 HIS462 ASP463 TYR464 HIS465 PRO466 ALA467 PRO468 LYS469 THR470 GLU471 ASN472 ILE473 LYS474 GLY475 LEU476 GLY477 ASP478 LEU479 LYS480 PRO481 GLY482 ILE483 PRO484 LYS485 THR486 PRO487 LYS488 GLN489 ASN490 GLY491 GLY492 GLY493 LYS494 ARG495 LYS496 ARG497 TRP498 THR499 GLY500 ASP501 LYS502 GLY503 ARG504 LYS505 ILE506 TYR507 GLU508 TRP509 ASP510 SER511 GLN512 HIS513 GLY514 GLU515 LEU516 GLU517 GLY518 TYR519 ARG520 ALA521 SER522 ASP523 GLY524 GLN525 HIS526 LEU527 GLY528 SER529 PHE530 ASP531 PRO532 LYS533 THR534 GLY535 ASN536 GLN537 LEU538 LYS539 GLY540 PRO541 ASP542 PRO543 LYS544 ARG545 ASN546 ILE547 LYS548 LYS549 TYR550 LEU551
Unit 4 GLY1 LEU2 LYS3 LEU4 ASP5 LEU6 THR7 TRP8 PHE9 ASP10 LYS11 SER12 THR13 GLU14 ASP15 PHE16 LYS17 GLY18 GLU19 GLU20 TYR21 SER22 LYS23 ASP24 PHE25 GLY26 ASP27 ASP28 GLY29 SER30 VAL31 MET32 GLU33 SER34 LEU35 GLY36 VAL37 PRO38 PHE39 LYS40 ASP41 ASN42 VAL43 ASN44 ASN45 GLY46 CYS47 PHE48 ASP49 VAL50 ILE51 ALA52 GLU53 TRP54 VAL55 PRO56 LEU57 LEU58 GLN59 PRO60 TYR61 PHE62 ASN63 HIS64 GLN65 ILE66 ASP67 ILE68 SER69 ASP70 ASN71 GLU72 TYR73 PHE74 VAL75 SER76 PHE77 ASP78 TYR79 ARG80 ASP81 GLY82 ASP83 TRP84

Ligands
Unit 5 CIT601 CIT602 GOL5701
Unit 6 GOL702
Unit 7 GOL701 CIT5601 CIT5602
Unit 8 GOL5702

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany