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Sequence, Chains, Asymmetric and Biological Units

Title A NOVEL MODE OF CARBOHYDRATE RECOGNITION IN JACALIN, A MORAC LECTIN WITH A BETA-PRISM
Keywords NON-LEGUME, LECTIN, BETA-PRISM FOLD, CARBOHYDRATE SPECIFICIT GLYCOPROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1JAC     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   JACALIN  A 133 1040 0
2  Protein   JACALIN  B 15 105 0
3  Protein   JACALIN  C 133 1040 0
4  Protein   JACALIN  D 15 105 0
5  Protein   JACALIN  E 133 1040 0
6  Protein   JACALIN  F 15 105 0
7  Protein   JACALIN  G 133 1040 0
8  Protein   JACALIN  H 15 105 0
9  Ligand   JACALIN  A 1 0 13
10  Ligand   JACALIN  C 1 0 13
11  Ligand   JACALIN  E 1 0 13
12  Ligand   JACALIN  G 1 0 13
13 Water     323 0 323
total       919 4580 375

Proteins
Unit 1 GLY1 LYS2 ALA3 PHE4 ASP5 ASP6 GLY7 ALA8 PHE9 THR10 GLY11 ILE12 ARG13 GLU14 ILE15 ASN16 LEU17 SER18 TYR19 ASN20 LYS21 GLU22 THR23 ALA24 ILE25 GLY26 ASP27 PHE28 GLN29 VAL30 VAL31 TYR32 ASP33 LEU34 ASN35 GLY36 SER37 PRO38 TYR39 VAL40 GLY41 GLN42 ASN43 HIS44 LYS45 SER46 PHE47 ILE48 THR49 GLY50 PHE51 THR52 PRO53 VAL54 LYS55 ILE56 SER57 LEU58 ASP59 PHE60 PRO61 SER62 GLU63 TYR64 ILE65 MET66 GLU67 VAL68 SER69 GLY70 TYR71 THR72 GLY73 ASN74 VAL75 SER76 GLY77 TYR78 VAL79 VAL80 VAL81 ARG82 SER83 LEU84 THR85 PHE86 LYS87 THR88 ASN89 LYS90 LYS91 THR92 TYR93 GLY94 PRO95 TYR96 GLY97 VAL98 THR99 SER100 GLY101 THR102 PRO103 PHE104 ASN105 LEU106 PRO107 ILE108 GLU109 ASN110 GLY111 LEU112 ILE113 VAL114 GLY115 PHE116 LYS117 GLY118 SER119 ILE120 GLY121 TYR122 TRP123 LEU124 ASP125 TYR126 PHE127 SER128 MET129 TYR130 LEU131 SER132 LEU133
Unit 2 SER4 GLY5 LYS6 SER7 GLN8 THR9 VAL10 ILE11 VAL12 GLY13 SER14 TRP15 GLY16 ALA17 LYS18
Unit 3 GLY1 LYS2 ALA3 PHE4 ASP5 ASP6 GLY7 ALA8 PHE9 THR10 GLY11 ILE12 ARG13 GLU14 ILE15 ASN16 LEU17 SER18 TYR19 ASN20 LYS21 GLU22 THR23 ALA24 ILE25 GLY26 ASP27 PHE28 GLN29 VAL30 VAL31 TYR32 ASP33 LEU34 ASN35 GLY36 SER37 PRO38 TYR39 VAL40 GLY41 GLN42 ASN43 HIS44 LYS45 SER46 PHE47 ILE48 THR49 GLY50 PHE51 THR52 PRO53 VAL54 LYS55 ILE56 SER57 LEU58 ASP59 PHE60 PRO61 SER62 GLU63 TYR64 ILE65 MET66 GLU67 VAL68 SER69 GLY70 TYR71 THR72 GLY73 ASN74 VAL75 SER76 GLY77 TYR78 VAL79 VAL80 VAL81 ARG82 SER83 LEU84 THR85 PHE86 LYS87 THR88 ASN89 LYS90 LYS91 THR92 TYR93 GLY94 PRO95 TYR96 GLY97 VAL98 THR99 SER100 GLY101 THR102 PRO103 PHE104 ASN105 LEU106 PRO107 ILE108 GLU109 ASN110 GLY111 LEU112 ILE113 VAL114 GLY115 PHE116 LYS117 GLY118 SER119 ILE120 GLY121 TYR122 TRP123 LEU124 ASP125 TYR126 PHE127 SER128 MET129 TYR130 LEU131 SER132 LEU133
Unit 4 SER4 GLY5 LYS6 SER7 GLN8 THR9 VAL10 ILE11 VAL12 GLY13 SER14 TRP15 GLY16 ALA17 LYS18
Unit 5 GLY1 LYS2 ALA3 PHE4 ASP5 ASP6 GLY7 ALA8 PHE9 THR10 GLY11 ILE12 ARG13 GLU14 ILE15 ASN16 LEU17 SER18 TYR19 ASN20 LYS21 GLU22 THR23 ALA24 ILE25 GLY26 ASP27 PHE28 GLN29 VAL30 VAL31 TYR32 ASP33 LEU34 ASN35 GLY36 SER37 PRO38 TYR39 VAL40 GLY41 GLN42 ASN43 HIS44 LYS45 SER46 PHE47 ILE48 THR49 GLY50 PHE51 THR52 PRO53 VAL54 LYS55 ILE56 SER57 LEU58 ASP59 PHE60 PRO61 SER62 GLU63 TYR64 ILE65 MET66 GLU67 VAL68 SER69 GLY70 TYR71 THR72 GLY73 ASN74 VAL75 SER76 GLY77 TYR78 VAL79 VAL80 VAL81 ARG82 SER83 LEU84 THR85 PHE86 LYS87 THR88 ASN89 LYS90 LYS91 THR92 TYR93 GLY94 PRO95 TYR96 GLY97 VAL98 THR99 SER100 GLY101 THR102 PRO103 PHE104 ASN105 LEU106 PRO107 ILE108 GLU109 ASN110 GLY111 LEU112 ILE113 VAL114 GLY115 PHE116 LYS117 GLY118 SER119 ILE120 GLY121 TYR122 TRP123 LEU124 ASP125 TYR126 PHE127 SER128 MET129 TYR130 LEU131 SER132 LEU133
Unit 6 SER4 GLY5 LYS6 SER7 GLN8 THR9 VAL10 ILE11 VAL12 GLY13 SER14 TRP15 GLY16 ALA17 LYS18
Unit 7 GLY1 LYS2 ALA3 PHE4 ASP5 ASP6 GLY7 ALA8 PHE9 THR10 GLY11 ILE12 ARG13 GLU14 ILE15 ASN16 LEU17 SER18 TYR19 ASN20 LYS21 GLU22 THR23 ALA24 ILE25 GLY26 ASP27 PHE28 GLN29 VAL30 VAL31 TYR32 ASP33 LEU34 ASN35 GLY36 SER37 PRO38 TYR39 VAL40 GLY41 GLN42 ASN43 HIS44 LYS45 SER46 PHE47 ILE48 THR49 GLY50 PHE51 THR52 PRO53 VAL54 LYS55 ILE56 SER57 LEU58 ASP59 PHE60 PRO61 SER62 GLU63 TYR64 ILE65 MET66 GLU67 VAL68 SER69 GLY70 TYR71 THR72 GLY73 ASN74 VAL75 SER76 GLY77 TYR78 VAL79 VAL80 VAL81 ARG82 SER83 LEU84 THR85 PHE86 LYS87 THR88 ASN89 LYS90 LYS91 THR92 TYR93 GLY94 PRO95 TYR96 GLY97 VAL98 THR99 SER100 GLY101 THR102 PRO103 PHE104 ASN105 LEU106 PRO107 ILE108 GLU109 ASN110 GLY111 LEU112 ILE113 VAL114 GLY115 PHE116 LYS117 GLY118 SER119 ILE120 GLY121 TYR122 TRP123 LEU124 ASP125 TYR126 PHE127 SER128 MET129 TYR130 LEU131 SER132 LEU133
Unit 8 SER4 GLY5 LYS6 SER7 GLN8 THR9 VAL10 ILE11 VAL12 GLY13 SER14 TRP15 GLY16 ALA17 LYS18

Ligands
Unit 9 AMG200
Unit 10 AMG200
Unit 11 AMG200
Unit 12 AMG200

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany