1J8D - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE METAL-FREE FORM OF THE DEOXY-D-MANNOSE-OCTU 8-PHOSPHATE PHOSPHATASE (YRBI) FROM HAEMOPHILUS INFLUENZAE
• Keywords: HI1679, STRUCTURAL GENOMICS, KDO 8-P PHOSPHATASE, STRUCTURE FUNCTION PROJECT, S2F, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1J8D	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	180	1306	56
2	Protein		B	180	1306	56
3	Protein		C	180	1306	56
4	Protein		D	180	1306	56
5	Ligand		D	1	0	6
6	Water			259	0	259
total				980	5224	489

Proteins

Unit 1	MSE 1 GLN 2 GLN 3 LYS 4 LEU 5 GLU 6 ASN 7 ILE 8 LYS 9 PHE 10 VAL 11 ILE 12 THR 13 ASP 14 VAL 15 ASP 16 GLY 17 VAL 18 LEU 19 THR 20 ASP 21 GLY 22 GLN 23 LEU 24 HIS 25 TYR 26 ASP 27 ALA 28 ASN 29 GLY 30 GLU 31 ALA 32 ILE 33 LYS 34 SER 35 PHE 36 HIS 37 VAL 38 ARG 39 ASP 40 GLY 41 LEU 42 GLY 43 ILE 44 LYS 45 MSE 46 LEU 47 MSE 48 ASP 49 ALA 50 ASP 51 ILE 52 GLN 53 VAL 54 ALA 55 VAL 56 LEU 57 SER 58 GLY 59 ARG 60 ASP 61 SER 62 PRO 63 ILE 64 LEU 65 ARG 66 ARG 67 ARG 68 ILE 69 ALA 70 ASP 71 LEU 72 GLY 73 ILE 74 LYS 75 LEU 76 PHE 77 PHE 78 LEU 79 GLY 80 LYS 81 LEU 82 GLU 83 LYS 84 GLU 85 THR 86 ALA 87 CYS 88 PHE 89 ASP 90 LEU 91 MSE 92 LYS 93 GLN 94 ALA 95 GLY 96 VAL 97 THR 98 ALA 99 GLU 100 GLN 101 THR 102 ALA 103 TYR 104 ILE 105 GLY 106 ASP 107 ASP 108 SER 109 VAL 110 ASP 111 LEU 112 PRO 113 ALA 114 PHE 115 ALA 116 ALA 117 CYS 118 GLY 119 THR 120 SER 121 PHE 122 ALA 123 VAL 124 ALA 125 ASP 126 ALA 127 PRO 128 ILE 129 TYR 130 VAL 131 LYS 132 ASN 133 ALA 134 VAL 135 ASP 136 HIS 137 VAL 138 LEU 139 SER 140 THR 141 HIS 142 GLY 143 GLY 144 LYS 145 GLY 146 ALA 147 PHE 148 ARG 149 GLU 150 MSE 151 SER 152 ASP 153 MSE 154 ILE 155 LEU 156 GLN 157 ALA 158 GLN 159 GLY 160 LYS 161 SER 162 SER 163 VAL 164 PHE 165 ASP 166 THR 167 ALA 168 GLN 169 GLY 170 PHE 171 LEU 172 LYS 173 SER 174 VAL 175 LYS 176 SER 177 MSE 178 GLY 179 GLN 180
Unit 2	MSE 1 GLN 2 GLN 3 LYS 4 LEU 5 GLU 6 ASN 7 ILE 8 LYS 9 PHE 10 VAL 11 ILE 12 THR 13 ASP 14 VAL 15 ASP 16 GLY 17 VAL 18 LEU 19 THR 20 ASP 21 GLY 22 GLN 23 LEU 24 HIS 25 TYR 26 ASP 27 ALA 28 ASN 29 GLY 30 GLU 31 ALA 32 ILE 33 LYS 34 SER 35 PHE 36 HIS 37 VAL 38 ARG 39 ASP 40 GLY 41 LEU 42 GLY 43 ILE 44 LYS 45 MSE 46 LEU 47 MSE 48 ASP 49 ALA 50 ASP 51 ILE 52 GLN 53 VAL 54 ALA 55 VAL 56 LEU 57 SER 58 GLY 59 ARG 60 ASP 61 SER 62 PRO 63 ILE 64 LEU 65 ARG 66 ARG 67 ARG 68 ILE 69 ALA 70 ASP 71 LEU 72 GLY 73 ILE 74 LYS 75 LEU 76 PHE 77 PHE 78 LEU 79 GLY 80 LYS 81 LEU 82 GLU 83 LYS 84 GLU 85 THR 86 ALA 87 CYS 88 PHE 89 ASP 90 LEU 91 MSE 92 LYS 93 GLN 94 ALA 95 GLY 96 VAL 97 THR 98 ALA 99 GLU 100 GLN 101 THR 102 ALA 103 TYR 104 ILE 105 GLY 106 ASP 107 ASP 108 SER 109 VAL 110 ASP 111 LEU 112 PRO 113 ALA 114 PHE 115 ALA 116 ALA 117 CYS 118 GLY 119 THR 120 SER 121 PHE 122 ALA 123 VAL 124 ALA 125 ASP 126 ALA 127 PRO 128 ILE 129 TYR 130 VAL 131 LYS 132 ASN 133 ALA 134 VAL 135 ASP 136 HIS 137 VAL 138 LEU 139 SER 140 THR 141 HIS 142 GLY 143 GLY 144 LYS 145 GLY 146 ALA 147 PHE 148 ARG 149 GLU 150 MSE 151 SER 152 ASP 153 MSE 154 ILE 155 LEU 156 GLN 157 ALA 158 GLN 159 GLY 160 LYS 161 SER 162 SER 163 VAL 164 PHE 165 ASP 166 THR 167 ALA 168 GLN 169 GLY 170 PHE 171 LEU 172 LYS 173 SER 174 VAL 175 LYS 176 SER 177 MSE 178 GLY 179 GLN 180
Unit 3	MSE 1 GLN 2 GLN 3 LYS 4 LEU 5 GLU 6 ASN 7 ILE 8 LYS 9 PHE 10 VAL 11 ILE 12 THR 13 ASP 14 VAL 15 ASP 16 GLY 17 VAL 18 LEU 19 THR 20 ASP 21 GLY 22 GLN 23 LEU 24 HIS 25 TYR 26 ASP 27 ALA 28 ASN 29 GLY 30 GLU 31 ALA 32 ILE 33 LYS 34 SER 35 PHE 36 HIS 37 VAL 38 ARG 39 ASP 40 GLY 41 LEU 42 GLY 43 ILE 44 LYS 45 MSE 46 LEU 47 MSE 48 ASP 49 ALA 50 ASP 51 ILE 52 GLN 53 VAL 54 ALA 55 VAL 56 LEU 57 SER 58 GLY 59 ARG 60 ASP 61 SER 62 PRO 63 ILE 64 LEU 65 ARG 66 ARG 67 ARG 68 ILE 69 ALA 70 ASP 71 LEU 72 GLY 73 ILE 74 LYS 75 LEU 76 PHE 77 PHE 78 LEU 79 GLY 80 LYS 81 LEU 82 GLU 83 LYS 84 GLU 85 THR 86 ALA 87 CYS 88 PHE 89 ASP 90 LEU 91 MSE 92 LYS 93 GLN 94 ALA 95 GLY 96 VAL 97 THR 98 ALA 99 GLU 100 GLN 101 THR 102 ALA 103 TYR 104 ILE 105 GLY 106 ASP 107 ASP 108 SER 109 VAL 110 ASP 111 LEU 112 PRO 113 ALA 114 PHE 115 ALA 116 ALA 117 CYS 118 GLY 119 THR 120 SER 121 PHE 122 ALA 123 VAL 124 ALA 125 ASP 126 ALA 127 PRO 128 ILE 129 TYR 130 VAL 131 LYS 132 ASN 133 ALA 134 VAL 135 ASP 136 HIS 137 VAL 138 LEU 139 SER 140 THR 141 HIS 142 GLY 143 GLY 144 LYS 145 GLY 146 ALA 147 PHE 148 ARG 149 GLU 150 MSE 151 SER 152 ASP 153 MSE 154 ILE 155 LEU 156 GLN 157 ALA 158 GLN 159 GLY 160 LYS 161 SER 162 SER 163 VAL 164 PHE 165 ASP 166 THR 167 ALA 168 GLN 169 GLY 170 PHE 171 LEU 172 LYS 173 SER 174 VAL 175 LYS 176 SER 177 MSE 178 GLY 179 GLN 180
Unit 4	MSE 1 GLN 2 GLN 3 LYS 4 LEU 5 GLU 6 ASN 7 ILE 8 LYS 9 PHE 10 VAL 11 ILE 12 THR 13 ASP 14 VAL 15 ASP 16 GLY 17 VAL 18 LEU 19 THR 20 ASP 21 GLY 22 GLN 23 LEU 24 HIS 25 TYR 26 ASP 27 ALA 28 ASN 29 GLY 30 GLU 31 ALA 32 ILE 33 LYS 34 SER 35 PHE 36 HIS 37 VAL 38 ARG 39 ASP 40 GLY 41 LEU 42 GLY 43 ILE 44 LYS 45 MSE 46 LEU 47 MSE 48 ASP 49 ALA 50 ASP 51 ILE 52 GLN 53 VAL 54 ALA 55 VAL 56 LEU 57 SER 58 GLY 59 ARG 60 ASP 61 SER 62 PRO 63 ILE 64 LEU 65 ARG 66 ARG 67 ARG 68 ILE 69 ALA 70 ASP 71 LEU 72 GLY 73 ILE 74 LYS 75 LEU 76 PHE 77 PHE 78 LEU 79 GLY 80 LYS 81 LEU 82 GLU 83 LYS 84 GLU 85 THR 86 ALA 87 CYS 88 PHE 89 ASP 90 LEU 91 MSE 92 LYS 93 GLN 94 ALA 95 GLY 96 VAL 97 THR 98 ALA 99 GLU 100 GLN 101 THR 102 ALA 103 TYR 104 ILE 105 GLY 106 ASP 107 ASP 108 SER 109 VAL 110 ASP 111 LEU 112 PRO 113 ALA 114 PHE 115 ALA 116 ALA 117 CYS 118 GLY 119 THR 120 SER 121 PHE 122 ALA 123 VAL 124 ALA 125 ASP 126 ALA 127 PRO 128 ILE 129 TYR 130 VAL 131 LYS 132 ASN 133 ALA 134 VAL 135 ASP 136 HIS 137 VAL 138 LEU 139 SER 140 THR 141 HIS 142 GLY 143 GLY 144 LYS 145 GLY 146 ALA 147 PHE 148 ARG 149 GLU 150 MSE 151 SER 152 ASP 153 MSE 154 ILE 155 LEU 156 GLN 157 ALA 158 GLN 159 GLY 160 LYS 161 SER 162 SER 163 VAL 164 PHE 165 ASP 166 THR 167 ALA 168 GLN 169 GLY 170 PHE 171 LEU 172 LYS 173 SER 174 VAL 175 LYS 176 SER 177 MSE 178 GLY 179 GLN 180

Ligands

Unit 5

GOL 200