1J0X - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE RABBIT MUSCLE GLYCERALDEHYDE-3-PHOS DEHYDROGENASE (GAPDH)
• Keywords: OXIDOREDUCTASE, DEHYDROGENASE, ROSSMANN FOLD, MAMMALIAN GAPD APOPTOSIS, NEGATIVE COOPERATIVITY
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1J0X	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	O	332	2504	7
2	Protein	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	P	332	2504	7
3	Protein	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	Q	332	2504	7
4	Protein	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	R	332	2504	7
5	Ligand	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	P	1	0	44
6	Ligand	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	R	1	0	44
7	Water			473	0	473
total				1803	10016	589

Proteins

Unit 1	VAL 1 LYS 2 VAL 3 GLY 4 VAL 5 ASN 6 GLY 7 PHE 8 GLY 9 ARG 10 ILE 11 GLY 12 ARG 13 LEU 14 VAL 15 THR 16 ARG 17 ALA 18 ALA 19 PHE 20 ASN 21 SER 22 GLY 23 LYS 24 VAL 25 ASP 26 VAL 27 VAL 28 ALA 29 ILE 30 ASN 31 ASP 32 PRO 33 PHE 34 ILE 35 ASP 36 LEU 37 HIS 38 TYR 39 MET 40 VAL 41 TYR 42 MET 43 PHE 44 GLN 45 TYR 46 ASP 47 SER 48 THR 49 HIS 50 GLY 51 LYS 52 PHE 53 HIS 54 GLY 55 THR 56 VAL 57 LYS 58 ALA 59 GLU 60 ASN 61 GLY 62 LYS 63 LEU 64 VAL 65 ILE 66 ASN 67 GLY 68 LYS 69 ALA 70 ILE 71 THR 72 ILE 73 PHE 74 GLN 75 GLU 76 ARG 77 ASP 78 PRO 79 ALA 80 ASN 81 ILE 82 LYS 83 TRP 84 GLY 85 ASP 86 ALA 87 GLY 88 ALA 89 GLU 90 TYR 91 VAL 92 VAL 93 GLU 94 SER 95 THR 96 GLY 97 VAL 98 PHE 99 THR 100 THR 101 MET 102 GLU 103 LYS 104 ALA 105 GLY 106 ALA 107 HIS 108 LEU 109 LYS 110 GLY 111 GLY 112 ALA 113 LYS 114 ARG 115 VAL 116 ILE 117 ILE 118 SER 119 ALA 120 PRO 121 SER 122 ALA 123 ASP 124 ALA 125 PRO 126 MET 127 PHE 128 VAL 129 MET 130 GLY 131 VAL 132 ASN 133 HIS 134 GLU 135 LYS 136 TYR 137 ASP 138 ASN 139 SER 140 LEU 141 LYS 142 ILE 143 VAL 144 SER 145 ASN 146 ALA 147 SER 148 CSX 149 THR 150 THR 151 ASN 152 CYS 153 LEU 154 ALA 155 PRO 156 LEU 157 ALA 158 LYS 159 VAL 160 ILE 161 HIS 162 ASP 163 HIS 164 PHE 165 GLY 166 ILE 167 VAL 168 GLU 169 GLY 170 LEU 171 MET 172 THR 173 THR 174 VAL 175 HIS 176 ALA 177 ILE 178 THR 179 ALA 180 THR 181 GLN 182 LYS 183 THR 184 VAL 185 ASP 186 GLY 187 PRO 188 SER 189 GLY 190 LYS 191 LEU 192 TRP 193 ARG 194 ASP 195 GLY 196 ARG 197 GLY 198 ALA 199 ALA 200 GLN 201 ASN 202 ILE 203 ILE 204 PRO 205 ALA 206 SER 207 THR 208 GLY 209 ALA 210 ALA 211 LYS 212 ALA 213 VAL 214 GLY 215 LYS 216 VAL 217 ILE 218 PRO 219 GLU 220 LEU 221 ASN 222 GLY 223 LYS 224 LEU 225 THR 226 GLY 227 MET 228 ALA 229 PHE 230 ARG 231 VAL 232 PRO 233 THR 234 PRO 235 ASN 236 VAL 237 SER 238 VAL 239 VAL 240 ASP 241 LEU 242 THR 243 CYS 244 ARG 245 LEU 246 GLU 247 LYS 248 ALA 249 ALA 250 LYS 251 TYR 252 ASP 253 ASP 254 ILE 255 LYS 256 LYS 257 VAL 258 VAL 259 LYS 260 GLN 261 ALA 262 SER 263 GLU 264 GLY 265 PRO 266 LEU 267 LYS 268 GLY 269 ILE 270 LEU 271 GLY 272 TYR 273 THR 274 GLU 275 ASP 276 GLN 277 VAL 278 VAL 279 SER 280 CYS 281 ASP 282 PHE 283 ASN 284 SER 285 ASP 286 THR 287 HIS 288 SER 289 SER 290 THR 291 PHE 292 ASP 293 ALA 294 GLY 295 ALA 296 GLY 297 ILE 298 ALA 299 LEU 300 ASN 301 ASP 302 HIS 303 PHE 304 VAL 305 LYS 306 LEU 307 ILE 308 SER 309 TRP 310 TYR 311 ASP 312 ASN 313 GLU 314 PHE 315 GLY 316 TYR 317 SER 318 ASN 319 ARG 320 VAL 321 VAL 322 ASP 323 LEU 324 MET 325 VAL 326 HIS 327 MET 328 ALA 329 SER 330 LYS 331 GLU 332
Unit 2	VAL 1 LYS 2 VAL 3 GLY 4 VAL 5 ASN 6 GLY 7 PHE 8 GLY 9 ARG 10 ILE 11 GLY 12 ARG 13 LEU 14 VAL 15 THR 16 ARG 17 ALA 18 ALA 19 PHE 20 ASN 21 SER 22 GLY 23 LYS 24 VAL 25 ASP 26 VAL 27 VAL 28 ALA 29 ILE 30 ASN 31 ASP 32 PRO 33 PHE 34 ILE 35 ASP 36 LEU 37 HIS 38 TYR 39 MET 40 VAL 41 TYR 42 MET 43 PHE 44 GLN 45 TYR 46 ASP 47 SER 48 THR 49 HIS 50 GLY 51 LYS 52 PHE 53 HIS 54 GLY 55 THR 56 VAL 57 LYS 58 ALA 59 GLU 60 ASN 61 GLY 62 LYS 63 LEU 64 VAL 65 ILE 66 ASN 67 GLY 68 LYS 69 ALA 70 ILE 71 THR 72 ILE 73 PHE 74 GLN 75 GLU 76 ARG 77 ASP 78 PRO 79 ALA 80 ASN 81 ILE 82 LYS 83 TRP 84 GLY 85 ASP 86 ALA 87 GLY 88 ALA 89 GLU 90 TYR 91 VAL 92 VAL 93 GLU 94 SER 95 THR 96 GLY 97 VAL 98 PHE 99 THR 100 THR 101 MET 102 GLU 103 LYS 104 ALA 105 GLY 106 ALA 107 HIS 108 LEU 109 LYS 110 GLY 111 GLY 112 ALA 113 LYS 114 ARG 115 VAL 116 ILE 117 ILE 118 SER 119 ALA 120 PRO 121 SER 122 ALA 123 ASP 124 ALA 125 PRO 126 MET 127 PHE 128 VAL 129 MET 130 GLY 131 VAL 132 ASN 133 HIS 134 GLU 135 LYS 136 TYR 137 ASP 138 ASN 139 SER 140 LEU 141 LYS 142 ILE 143 VAL 144 SER 145 ASN 146 ALA 147 SER 148 CSX 149 THR 150 THR 151 ASN 152 CYS 153 LEU 154 ALA 155 PRO 156 LEU 157 ALA 158 LYS 159 VAL 160 ILE 161 HIS 162 ASP 163 HIS 164 PHE 165 GLY 166 ILE 167 VAL 168 GLU 169 GLY 170 LEU 171 MET 172 THR 173 THR 174 VAL 175 HIS 176 ALA 177 ILE 178 THR 179 ALA 180 THR 181 GLN 182 LYS 183 THR 184 VAL 185 ASP 186 GLY 187 PRO 188 SER 189 GLY 190 LYS 191 LEU 192 TRP 193 ARG 194 ASP 195 GLY 196 ARG 197 GLY 198 ALA 199 ALA 200 GLN 201 ASN 202 ILE 203 ILE 204 PRO 205 ALA 206 SER 207 THR 208 GLY 209 ALA 210 ALA 211 LYS 212 ALA 213 VAL 214 GLY 215 LYS 216 VAL 217 ILE 218 PRO 219 GLU 220 LEU 221 ASN 222 GLY 223 LYS 224 LEU 225 THR 226 GLY 227 MET 228 ALA 229 PHE 230 ARG 231 VAL 232 PRO 233 THR 234 PRO 235 ASN 236 VAL 237 SER 238 VAL 239 VAL 240 ASP 241 LEU 242 THR 243 CYS 244 ARG 245 LEU 246 GLU 247 LYS 248 ALA 249 ALA 250 LYS 251 TYR 252 ASP 253 ASP 254 ILE 255 LYS 256 LYS 257 VAL 258 VAL 259 LYS 260 GLN 261 ALA 262 SER 263 GLU 264 GLY 265 PRO 266 LEU 267 LYS 268 GLY 269 ILE 270 LEU 271 GLY 272 TYR 273 THR 274 GLU 275 ASP 276 GLN 277 VAL 278 VAL 279 SER 280 CYS 281 ASP 282 PHE 283 ASN 284 SER 285 ASP 286 THR 287 HIS 288 SER 289 SER 290 THR 291 PHE 292 ASP 293 ALA 294 GLY 295 ALA 296 GLY 297 ILE 298 ALA 299 LEU 300 ASN 301 ASP 302 HIS 303 PHE 304 VAL 305 LYS 306 LEU 307 ILE 308 SER 309 TRP 310 TYR 311 ASP 312 ASN 313 GLU 314 PHE 315 GLY 316 TYR 317 SER 318 ASN 319 ARG 320 VAL 321 VAL 322 ASP 323 LEU 324 MET 325 VAL 326 HIS 327 MET 328 ALA 329 SER 330 LYS 331 GLU 332
Unit 3	VAL 1 LYS 2 VAL 3 GLY 4 VAL 5 ASN 6 GLY 7 PHE 8 GLY 9 ARG 10 ILE 11 GLY 12 ARG 13 LEU 14 VAL 15 THR 16 ARG 17 ALA 18 ALA 19 PHE 20 ASN 21 SER 22 GLY 23 LYS 24 VAL 25 ASP 26 VAL 27 VAL 28 ALA 29 ILE 30 ASN 31 ASP 32 PRO 33 PHE 34 ILE 35 ASP 36 LEU 37 HIS 38 TYR 39 MET 40 VAL 41 TYR 42 MET 43 PHE 44 GLN 45 TYR 46 ASP 47 SER 48 THR 49 HIS 50 GLY 51 LYS 52 PHE 53 HIS 54 GLY 55 THR 56 VAL 57 LYS 58 ALA 59 GLU 60 ASN 61 GLY 62 LYS 63 LEU 64 VAL 65 ILE 66 ASN 67 GLY 68 LYS 69 ALA 70 ILE 71 THR 72 ILE 73 PHE 74 GLN 75 GLU 76 ARG 77 ASP 78 PRO 79 ALA 80 ASN 81 ILE 82 LYS 83 TRP 84 GLY 85 ASP 86 ALA 87 GLY 88 ALA 89 GLU 90 TYR 91 VAL 92 VAL 93 GLU 94 SER 95 THR 96 GLY 97 VAL 98 PHE 99 THR 100 THR 101 MET 102 GLU 103 LYS 104 ALA 105 GLY 106 ALA 107 HIS 108 LEU 109 LYS 110 GLY 111 GLY 112 ALA 113 LYS 114 ARG 115 VAL 116 ILE 117 ILE 118 SER 119 ALA 120 PRO 121 SER 122 ALA 123 ASP 124 ALA 125 PRO 126 MET 127 PHE 128 VAL 129 MET 130 GLY 131 VAL 132 ASN 133 HIS 134 GLU 135 LYS 136 TYR 137 ASP 138 ASN 139 SER 140 LEU 141 LYS 142 ILE 143 VAL 144 SER 145 ASN 146 ALA 147 SER 148 CSX 149 THR 150 THR 151 ASN 152 CYS 153 LEU 154 ALA 155 PRO 156 LEU 157 ALA 158 LYS 159 VAL 160 ILE 161 HIS 162 ASP 163 HIS 164 PHE 165 GLY 166 ILE 167 VAL 168 GLU 169 GLY 170 LEU 171 MET 172 THR 173 THR 174 VAL 175 HIS 176 ALA 177 ILE 178 THR 179 ALA 180 THR 181 GLN 182 LYS 183 THR 184 VAL 185 ASP 186 GLY 187 PRO 188 SER 189 GLY 190 LYS 191 LEU 192 TRP 193 ARG 194 ASP 195 GLY 196 ARG 197 GLY 198 ALA 199 ALA 200 GLN 201 ASN 202 ILE 203 ILE 204 PRO 205 ALA 206 SER 207 THR 208 GLY 209 ALA 210 ALA 211 LYS 212 ALA 213 VAL 214 GLY 215 LYS 216 VAL 217 ILE 218 PRO 219 GLU 220 LEU 221 ASN 222 GLY 223 LYS 224 LEU 225 THR 226 GLY 227 MET 228 ALA 229 PHE 230 ARG 231 VAL 232 PRO 233 THR 234 PRO 235 ASN 236 VAL 237 SER 238 VAL 239 VAL 240 ASP 241 LEU 242 THR 243 CYS 244 ARG 245 LEU 246 GLU 247 LYS 248 ALA 249 ALA 250 LYS 251 TYR 252 ASP 253 ASP 254 ILE 255 LYS 256 LYS 257 VAL 258 VAL 259 LYS 260 GLN 261 ALA 262 SER 263 GLU 264 GLY 265 PRO 266 LEU 267 LYS 268 GLY 269 ILE 270 LEU 271 GLY 272 TYR 273 THR 274 GLU 275 ASP 276 GLN 277 VAL 278 VAL 279 SER 280 CYS 281 ASP 282 PHE 283 ASN 284 SER 285 ASP 286 THR 287 HIS 288 SER 289 SER 290 THR 291 PHE 292 ASP 293 ALA 294 GLY 295 ALA 296 GLY 297 ILE 298 ALA 299 LEU 300 ASN 301 ASP 302 HIS 303 PHE 304 VAL 305 LYS 306 LEU 307 ILE 308 SER 309 TRP 310 TYR 311 ASP 312 ASN 313 GLU 314 PHE 315 GLY 316 TYR 317 SER 318 ASN 319 ARG 320 VAL 321 VAL 322 ASP 323 LEU 324 MET 325 VAL 326 HIS 327 MET 328 ALA 329 SER 330 LYS 331 GLU 332
Unit 4	VAL 1 LYS 2 VAL 3 GLY 4 VAL 5 ASN 6 GLY 7 PHE 8 GLY 9 ARG 10 ILE 11 GLY 12 ARG 13 LEU 14 VAL 15 THR 16 ARG 17 ALA 18 ALA 19 PHE 20 ASN 21 SER 22 GLY 23 LYS 24 VAL 25 ASP 26 VAL 27 VAL 28 ALA 29 ILE 30 ASN 31 ASP 32 PRO 33 PHE 34 ILE 35 ASP 36 LEU 37 HIS 38 TYR 39 MET 40 VAL 41 TYR 42 MET 43 PHE 44 GLN 45 TYR 46 ASP 47 SER 48 THR 49 HIS 50 GLY 51 LYS 52 PHE 53 HIS 54 GLY 55 THR 56 VAL 57 LYS 58 ALA 59 GLU 60 ASN 61 GLY 62 LYS 63 LEU 64 VAL 65 ILE 66 ASN 67 GLY 68 LYS 69 ALA 70 ILE 71 THR 72 ILE 73 PHE 74 GLN 75 GLU 76 ARG 77 ASP 78 PRO 79 ALA 80 ASN 81 ILE 82 LYS 83 TRP 84 GLY 85 ASP 86 ALA 87 GLY 88 ALA 89 GLU 90 TYR 91 VAL 92 VAL 93 GLU 94 SER 95 THR 96 GLY 97 VAL 98 PHE 99 THR 100 THR 101 MET 102 GLU 103 LYS 104 ALA 105 GLY 106 ALA 107 HIS 108 LEU 109 LYS 110 GLY 111 GLY 112 ALA 113 LYS 114 ARG 115 VAL 116 ILE 117 ILE 118 SER 119 ALA 120 PRO 121 SER 122 ALA 123 ASP 124 ALA 125 PRO 126 MET 127 PHE 128 VAL 129 MET 130 GLY 131 VAL 132 ASN 133 HIS 134 GLU 135 LYS 136 TYR 137 ASP 138 ASN 139 SER 140 LEU 141 LYS 142 ILE 143 VAL 144 SER 145 ASN 146 ALA 147 SER 148 CSX 149 THR 150 THR 151 ASN 152 CYS 153 LEU 154 ALA 155 PRO 156 LEU 157 ALA 158 LYS 159 VAL 160 ILE 161 HIS 162 ASP 163 HIS 164 PHE 165 GLY 166 ILE 167 VAL 168 GLU 169 GLY 170 LEU 171 MET 172 THR 173 THR 174 VAL 175 HIS 176 ALA 177 ILE 178 THR 179 ALA 180 THR 181 GLN 182 LYS 183 THR 184 VAL 185 ASP 186 GLY 187 PRO 188 SER 189 GLY 190 LYS 191 LEU 192 TRP 193 ARG 194 ASP 195 GLY 196 ARG 197 GLY 198 ALA 199 ALA 200 GLN 201 ASN 202 ILE 203 ILE 204 PRO 205 ALA 206 SER 207 THR 208 GLY 209 ALA 210 ALA 211 LYS 212 ALA 213 VAL 214 GLY 215 LYS 216 VAL 217 ILE 218 PRO 219 GLU 220 LEU 221 ASN 222 GLY 223 LYS 224 LEU 225 THR 226 GLY 227 MET 228 ALA 229 PHE 230 ARG 231 VAL 232 PRO 233 THR 234 PRO 235 ASN 236 VAL 237 SER 238 VAL 239 VAL 240 ASP 241 LEU 242 THR 243 CYS 244 ARG 245 LEU 246 GLU 247 LYS 248 ALA 249 ALA 250 LYS 251 TYR 252 ASP 253 ASP 254 ILE 255 LYS 256 LYS 257 VAL 258 VAL 259 LYS 260 GLN 261 ALA 262 SER 263 GLU 264 GLY 265 PRO 266 LEU 267 LYS 268 GLY 269 ILE 270 LEU 271 GLY 272 TYR 273 THR 274 GLU 275 ASP 276 GLN 277 VAL 278 VAL 279 SER 280 CYS 281 ASP 282 PHE 283 ASN 284 SER 285 ASP 286 THR 287 HIS 288 SER 289 SER 290 THR 291 PHE 292 ASP 293 ALA 294 GLY 295 ALA 296 GLY 297 ILE 298 ALA 299 LEU 300 ASN 301 ASP 302 HIS 303 PHE 304 VAL 305 LYS 306 LEU 307 ILE 308 SER 309 TRP 310 TYR 311 ASP 312 ASN 313 GLU 314 PHE 315 GLY 316 TYR 317 SER 318 ASN 319 ARG 320 VAL 321 VAL 322 ASP 323 LEU 324 MET 325 VAL 326 HIS 327 MET 328 ALA 329 SER 330 LYS 331 GLU 332

Ligands

Unit 5	NAD 1336
Unit 6	NAD 2336