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Sequence, Chains, Asymmetric and Biological Units

Title PRELIMINARY STRUCTURE OF THERMUS THERMOPHILUS LIGAND-FREE VA SYNTHETASE
Keywords ROSSMANN FOLD, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATI STRUCTURAL GENOMICS, LIGASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1IYW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VALYL-TRNA SYNTHETASE  A 862 862 0
2  Protein   VALYL-TRNA SYNTHETASE  B 862 862 0
total       1724 1724 0

Proteins
Unit 1 MET1 ASP2 LEU3 PRO4 LYS5 ALA6 TYR7 ASP8 PRO9 LYS10 SER11 VAL12 GLU13 PRO14 LYS15 TRP16 ALA17 GLU18 LYS19 TRP20 ALA21 LYS22 ASN23 PRO24 PHE25 VAL26 ALA27 ASN28 PRO29 LYS30 SER31 GLY32 LYS33 PRO34 PRO35 PHE36 VAL37 ILE38 PHE39 MET40 PRO41 PRO42 PRO43 ASN44 VAL45 THR46 GLY47 SER48 LEU49 HIS50 MET51 GLY52 HIS53 ALA54 LEU55 ASP56 ASN57 SER58 LEU59 GLN60 ASP61 ALA62 LEU63 ILE64 ARG65 TYR66 LYS67 ARG68 MET69 ARG70 GLY71 PHE72 GLU73 ALA74 VAL75 TRP76 LEU77 PRO78 GLY79 THR80 ASP81 HIS82 ALA83 GLY84 ILE85 ALA86 THR87 GLN88 VAL89 VAL90 VAL91 GLU92 ARG93 LEU94 LEU95 LEU96 LYS97 GLU98 GLY99 LYS100 THR101 ARG102 HIS103 ASP104 LEU105 GLY106 ARG107 GLU108 LYS109 PHE110 LEU111 GLU112 ARG113 VAL114 TRP115 GLN116 TRP117 LYS118 GLU119 GLU120 SER121 GLY122 GLY123 THR124 ILE125 LEU126 LYS127 GLN128 LEU129 LYS130 ARG131 LEU132 GLY133 ALA134 SER135 ALA136 ASP137 TRP138 SER139 ARG140 GLU141 ALA142 PHE143 THR144 MET145 ASP146 GLU147 LYS148 ARG149 SER150 ARG151 ALA152 VAL153 ARG154 TYR155 ALA156 PHE157 SER158 ARG159 TYR160 TYR161 HIS162 GLU163 GLY164 LEU165 ALA166 TYR167 ARG168 ALA169 PRO170 ARG171 LEU172 VAL173 ASN174 TRP175 CYS176 PRO177 ARG178 CYS179 GLU180 THR181 THR182 LEU183 SER184 ASP185 LEU186 GLU187 VAL188 GLU189 THR190 GLU191 PRO192 THR193 PRO194 GLY195 LYS196 LEU197 TYR198 THR199 LEU200 ARG201 TYR202 GLU203 VAL204 GLU205 GLY206 GLY207 GLY208 PHE209 ILE210 GLU211 ILE212 ALA213 THR214 VAL215 ARG216 PRO217 GLU218 THR219 VAL220 PHE221 ALA222 ASP223 GLN224 ALA225 ILE226 ALA227 VAL228 HIS229 PRO230 GLU231 ASP232 GLU233 ARG234 TYR235 ARG236 HIS237 LEU238 LEU239 GLY240 LYS241 ARG242 ALA243 ARG244 ILE245 PRO246 LEU247 THR248 GLU249 VAL250 TRP251 ILE252 PRO253 ILE254 LEU255 ALA256 ASP257 PRO258 ALA259 VAL260 GLU261 LYS262 ASP263 PHE264 GLY265 THR266 GLY267 ALA268 LEU269 LYS270 VAL271 THR272 PRO273 ALA274 HIS275 ASP276 PRO277 LEU278 ASP279 TYR280 GLU281 ILE282 GLY283 GLU284 ARG285 HIS286 GLY287 LEU288 LYS289 PRO290 VAL291 SER292 VAL293 ILE294 ASN295 LEU296 GLU297 GLY298 ARG299 MET300 GLU301 GLY302 GLU303 ARG304 VAL305 PRO306 GLU307 ALA308 LEU309 ARG310 GLY311 LEU312 ASP313 ARG314 PHE315 GLU316 ALA317 ARG318 ARG319 LYS320 ALA321 VAL322 GLU323 LEU324 PHE325 ARG326 GLU327 ALA328 GLY329 HIS330 LEU331 VAL332 LYS333 GLU334 GLU335 ASP336 TYR337 THR338 ILE339 ALA340 LEU341 ALA342 THR343 CYS344 SER345 ARG346 CYS347 GLY348 THR349 PRO350 ILE351 GLU352 TYR353 ALA354 ILE355 PHE356 PRO357 GLN358 TRP359 TRP360 LEU361 ARG362 MET363 ARG364 PRO365 LEU366 ALA367 GLU368 GLU369 VAL370 LEU371 LYS372 GLY373 LEU374 ARG375 ARG376 GLY377 ASP378 ILE379 ALA380 PHE381 VAL382 PRO383 GLU384 ARG385 TRP386 LYS387 LYS388 VAL389 ASN390 MET391 ASP392 TRP393 LEU394 GLU395 ASN396 VAL397 LYS398 ASP399 TRP400 ASN401 ILE402 SER403 ARG404 GLN405 LEU406 TRP407 TRP408 GLY409 HIS410 GLN411 ILE412 PRO413 ALA414 TRP415 TYR416 CYS417 GLU418 ASP419 CYS420 GLN421 ALA422 VAL423 ASN424 VAL425 PRO426 ARG427 PRO428 GLU429 ARG430 TYR431 LEU432 GLU433 ASP434 PRO435 THR436 SER437 CYS438 GLU439 ALA440 CYS441 GLY442 SER443 PRO444 ARG445 LEU446 LYS447 ARG448 ASP449 GLU450 ASP451 VAL452 PHE453 ASP454 THR455 TRP456 PHE457 SER458 SER459 ALA460 LEU461 TRP462 PRO463 LEU464 SER465 THR466 LEU467 GLY468 TRP469 PRO470 GLU471 GLU472 THR473 GLU474 ASP475 LEU476 LYS477 ALA478 PHE479 TYR480 PRO481 GLY482 ASP483 VAL484 LEU485 VAL486 THR487 GLY488 TYR489 ASP490 ILE491 LEU492 PHE493 LEU494 TRP495 VAL496 SER497 ARG498 MET499 GLU500 VAL501 SER502 GLY503 TYR504 HIS505 PHE506 MET507 GLY508 GLU509 ARG510 PRO511 PHE512 LYS513 THR514 VAL515 LEU516 LEU517 HIS518 GLY519 LEU520 VAL521 LEU522 ASP523 GLU524 LYS525 GLY526 GLN527 LYS528 MET529 SER530 LYS531 SER532 LYS533 GLY534 ASN535 VAL536 ILE537 ASP538 PRO539 LEU540 GLU541 MET542 VAL543 GLU544 ARG545 TYR546 GLY547 ALA548 ASP549 ALA550 LEU551 ARG552 PHE553 ALA554 LEU555 ILE556 TYR557 LEU558 ALA559 THR560 GLY561 GLY562 GLN563 ASP564 ILE565 ARG566 LEU567 ASP568 LEU569 ARG570 TRP571 LEU572 GLU573 MET574 ALA575 ARG576 ASN577 PHE578 ALA579 ASN580 LYS581 LEU582 TYR583 ASN584 ALA585 ALA586 ARG587 PHE588 VAL589 LEU590 LEU591 SER592 ARG593 GLU594 GLY595 PHE596 GLN597 ALA598 LYS599 GLU600 ASP601 THR602 PRO603 THR604 LEU605 ALA606 ASP607 ARG608 PHE609 MET610 ARG611 SER612 ARG613 LEU614 SER615 ARG616 GLY617 VAL618 GLU619 GLU620 ILE621 THR622 ALA623 LEU624 TYR625 GLU626 ALA627 LEU628 ASP629 LEU630 ALA631 GLN632 ALA633 ALA634 ARG635 GLU636 VAL637 TYR638 GLU639 LEU640 VAL641 TRP642 SER643 GLU644 PHE645 CYS646 ASP647 TRP648 TYR649 LEU650 GLU651 ALA652 ALA653 LYS654 PRO655 ALA656 LEU657 LYS658 ALA659 GLY660 ASN661 ALA662 HIS663 THR664 LEU665 ARG666 THR667 LEU668 GLU669 GLU670 VAL671 LEU672 ALA673 VAL674 LEU675 LEU676 LYS677 LEU678 LEU679 HIS680 PRO681 MET682 MET683 PRO684 PHE685 LEU686 THR687 SER688 GLU689 LEU690 TYR691 GLN692 ALA693 LEU694 THR695 GLY696 LYS697 GLU698 GLU699 LEU700 ALA701 LEU702 GLU703 ALA704 TRP705 PRO706 GLU707 PRO708 GLY709 GLY710 ARG711 ASP712 GLU713 GLU714 ALA715 GLU716 ARG717 ALA718 PHE719 GLU720 ALA721 LEU722 LYS723 GLN724 ALA725 VAL726 THR727 ALA728 VAL729 ARG730 ALA731 LEU732 LYS733 ALA734 GLU735 ALA736 GLY737 LEU738 PRO739 PRO740 ALA741 GLN742 GLU743 VAL744 ARG745 VAL746 TYR747 LEU748 GLU749 GLY750 GLU751 THR752 ALA753 PRO754 VAL755 GLU756 GLU757 ASN758 LEU759 GLU760 VAL761 PHE762 ARG763 PHE764 LEU765 SER766 ARG767 ALA768 ASP769 LEU770 LEU771 PRO772 GLU773 ARG774 PRO775 ALA776 LYS777 ALA778 LEU779 VAL780 LYS781 ALA782 MET783 PRO784 ARG785 VAL786 THR787 ALA788 ARG789 MET790 PRO791 LEU792 GLU793 GLY794 LEU795 LEU796 ASP797 VAL798 GLU799 GLU800 TRP801 ARG802 ARG803 ARG804 GLN805 GLU806 LYS807 ARG808 LEU809 LYS810 GLU811 LEU812 LEU813 ALA814 LEU815 ALA816 GLU817 ARG818 SER819 GLN820 ARG821 LYS822 LEU823 ALA824 SER825 PRO826 GLY827 PHE828 ARG829 GLU830 LYS831 ALA832 PRO833 LYS834 GLU835 VAL836 VAL837 GLU838 ALA839 GLU840 GLU841 ALA842 ARG843 LEU844 LYS845 GLU846 ASN847 LEU848 GLU849 GLN850 ALA851 GLU852 ARG853 ILE854 ARG855 GLU856 ALA857 LEU858 SER859 GLN860 ILE861 GLY862
Unit 2 MET1 ASP2 LEU3 PRO4 LYS5 ALA6 TYR7 ASP8 PRO9 LYS10 SER11 VAL12 GLU13 PRO14 LYS15 TRP16 ALA17 GLU18 LYS19 TRP20 ALA21 LYS22 ASN23 PRO24 PHE25 VAL26 ALA27 ASN28 PRO29 LYS30 SER31 GLY32 LYS33 PRO34 PRO35 PHE36 VAL37 ILE38 PHE39 MET40 PRO41 PRO42 PRO43 ASN44 VAL45 THR46 GLY47 SER48 LEU49 HIS50 MET51 GLY52 HIS53 ALA54 LEU55 ASP56 ASN57 SER58 LEU59 GLN60 ASP61 ALA62 LEU63 ILE64 ARG65 TYR66 LYS67 ARG68 MET69 ARG70 GLY71 PHE72 GLU73 ALA74 VAL75 TRP76 LEU77 PRO78 GLY79 THR80 ASP81 HIS82 ALA83 GLY84 ILE85 ALA86 THR87 GLN88 VAL89 VAL90 VAL91 GLU92 ARG93 LEU94 LEU95 LEU96 LYS97 GLU98 GLY99 LYS100 THR101 ARG102 HIS103 ASP104 LEU105 GLY106 ARG107 GLU108 LYS109 PHE110 LEU111 GLU112 ARG113 VAL114 TRP115 GLN116 TRP117 LYS118 GLU119 GLU120 SER121 GLY122 GLY123 THR124 ILE125 LEU126 LYS127 GLN128 LEU129 LYS130 ARG131 LEU132 GLY133 ALA134 SER135 ALA136 ASP137 TRP138 SER139 ARG140 GLU141 ALA142 PHE143 THR144 MET145 ASP146 GLU147 LYS148 ARG149 SER150 ARG151 ALA152 VAL153 ARG154 TYR155 ALA156 PHE157 SER158 ARG159 TYR160 TYR161 HIS162 GLU163 GLY164 LEU165 ALA166 TYR167 ARG168 ALA169 PRO170 ARG171 LEU172 VAL173 ASN174 TRP175 CYS176 PRO177 ARG178 CYS179 GLU180 THR181 THR182 LEU183 SER184 ASP185 LEU186 GLU187 VAL188 GLU189 THR190 GLU191 PRO192 THR193 PRO194 GLY195 LYS196 LEU197 TYR198 THR199 LEU200 ARG201 TYR202 GLU203 VAL204 GLU205 GLY206 GLY207 GLY208 PHE209 ILE210 GLU211 ILE212 ALA213 THR214 VAL215 ARG216 PRO217 GLU218 THR219 VAL220 PHE221 ALA222 ASP223 GLN224 ALA225 ILE226 ALA227 VAL228 HIS229 PRO230 GLU231 ASP232 GLU233 ARG234 TYR235 ARG236 HIS237 LEU238 LEU239 GLY240 LYS241 ARG242 ALA243 ARG244 ILE245 PRO246 LEU247 THR248 GLU249 VAL250 TRP251 ILE252 PRO253 ILE254 LEU255 ALA256 ASP257 PRO258 ALA259 VAL260 GLU261 LYS262 ASP263 PHE264 GLY265 THR266 GLY267 ALA268 LEU269 LYS270 VAL271 THR272 PRO273 ALA274 HIS275 ASP276 PRO277 LEU278 ASP279 TYR280 GLU281 ILE282 GLY283 GLU284 ARG285 HIS286 GLY287 LEU288 LYS289 PRO290 VAL291 SER292 VAL293 ILE294 ASN295 LEU296 GLU297 GLY298 ARG299 MET300 GLU301 GLY302 GLU303 ARG304 VAL305 PRO306 GLU307 ALA308 LEU309 ARG310 GLY311 LEU312 ASP313 ARG314 PHE315 GLU316 ALA317 ARG318 ARG319 LYS320 ALA321 VAL322 GLU323 LEU324 PHE325 ARG326 GLU327 ALA328 GLY329 HIS330 LEU331 VAL332 LYS333 GLU334 GLU335 ASP336 TYR337 THR338 ILE339 ALA340 LEU341 ALA342 THR343 CYS344 SER345 ARG346 CYS347 GLY348 THR349 PRO350 ILE351 GLU352 TYR353 ALA354 ILE355 PHE356 PRO357 GLN358 TRP359 TRP360 LEU361 ARG362 MET363 ARG364 PRO365 LEU366 ALA367 GLU368 GLU369 VAL370 LEU371 LYS372 GLY373 LEU374 ARG375 ARG376 GLY377 ASP378 ILE379 ALA380 PHE381 VAL382 PRO383 GLU384 ARG385 TRP386 LYS387 LYS388 VAL389 ASN390 MET391 ASP392 TRP393 LEU394 GLU395 ASN396 VAL397 LYS398 ASP399 TRP400 ASN401 ILE402 SER403 ARG404 GLN405 LEU406 TRP407 TRP408 GLY409 HIS410 GLN411 ILE412 PRO413 ALA414 TRP415 TYR416 CYS417 GLU418 ASP419 CYS420 GLN421 ALA422 VAL423 ASN424 VAL425 PRO426 ARG427 PRO428 GLU429 ARG430 TYR431 LEU432 GLU433 ASP434 PRO435 THR436 SER437 CYS438 GLU439 ALA440 CYS441 GLY442 SER443 PRO444 ARG445 LEU446 LYS447 ARG448 ASP449 GLU450 ASP451 VAL452 PHE453 ASP454 THR455 TRP456 PHE457 SER458 SER459 ALA460 LEU461 TRP462 PRO463 LEU464 SER465 THR466 LEU467 GLY468 TRP469 PRO470 GLU471 GLU472 THR473 GLU474 ASP475 LEU476 LYS477 ALA478 PHE479 TYR480 PRO481 GLY482 ASP483 VAL484 LEU485 VAL486 THR487 GLY488 TYR489 ASP490 ILE491 LEU492 PHE493 LEU494 TRP495 VAL496 SER497 ARG498 MET499 GLU500 VAL501 SER502 GLY503 TYR504 HIS505 PHE506 MET507 GLY508 GLU509 ARG510 PRO511 PHE512 LYS513 THR514 VAL515 LEU516 LEU517 HIS518 GLY519 LEU520 VAL521 LEU522 ASP523 GLU524 LYS525 GLY526 GLN527 LYS528 MET529 SER530 LYS531 SER532 LYS533 GLY534 ASN535 VAL536 ILE537 ASP538 PRO539 LEU540 GLU541 MET542 VAL543 GLU544 ARG545 TYR546 GLY547 ALA548 ASP549 ALA550 LEU551 ARG552 PHE553 ALA554 LEU555 ILE556 TYR557 LEU558 ALA559 THR560 GLY561 GLY562 GLN563 ASP564 ILE565 ARG566 LEU567 ASP568 LEU569 ARG570 TRP571 LEU572 GLU573 MET574 ALA575 ARG576 ASN577 PHE578 ALA579 ASN580 LYS581 LEU582 TYR583 ASN584 ALA585 ALA586 ARG587 PHE588 VAL589 LEU590 LEU591 SER592 ARG593 GLU594 GLY595 PHE596 GLN597 ALA598 LYS599 GLU600 ASP601 THR602 PRO603 THR604 LEU605 ALA606 ASP607 ARG608 PHE609 MET610 ARG611 SER612 ARG613 LEU614 SER615 ARG616 GLY617 VAL618 GLU619 GLU620 ILE621 THR622 ALA623 LEU624 TYR625 GLU626 ALA627 LEU628 ASP629 LEU630 ALA631 GLN632 ALA633 ALA634 ARG635 GLU636 VAL637 TYR638 GLU639 LEU640 VAL641 TRP642 SER643 GLU644 PHE645 CYS646 ASP647 TRP648 TYR649 LEU650 GLU651 ALA652 ALA653 LYS654 PRO655 ALA656 LEU657 LYS658 ALA659 GLY660 ASN661 ALA662 HIS663 THR664 LEU665 ARG666 THR667 LEU668 GLU669 GLU670 VAL671 LEU672 ALA673 VAL674 LEU675 LEU676 LYS677 LEU678 LEU679 HIS680 PRO681 MET682 MET683 PRO684 PHE685 LEU686 THR687 SER688 GLU689 LEU690 TYR691 GLN692 ALA693 LEU694 THR695 GLY696 LYS697 GLU698 GLU699 LEU700 ALA701 LEU702 GLU703 ALA704 TRP705 PRO706 GLU707 PRO708 GLY709 GLY710 ARG711 ASP712 GLU713 GLU714 ALA715 GLU716 ARG717 ALA718 PHE719 GLU720 ALA721 LEU722 LYS723 GLN724 ALA725 VAL726 THR727 ALA728 VAL729 ARG730 ALA731 LEU732 LYS733 ALA734 GLU735 ALA736 GLY737 LEU738 PRO739 PRO740 ALA741 GLN742 GLU743 VAL744 ARG745 VAL746 TYR747 LEU748 GLU749 GLY750 GLU751 THR752 ALA753 PRO754 VAL755 GLU756 GLU757 ASN758 LEU759 GLU760 VAL761 PHE762 ARG763 PHE764 LEU765 SER766 ARG767 ALA768 ASP769 LEU770 LEU771 PRO772 GLU773 ARG774 PRO775 ALA776 LYS777 ALA778 LEU779 VAL780 LYS781 ALA782 MET783 PRO784 ARG785 VAL786 THR787 ALA788 ARG789 MET790 PRO791 LEU792 GLU793 GLY794 LEU795 LEU796 ASP797 VAL798 GLU799 GLU800 TRP801 ARG802 ARG803 ARG804 GLN805 GLU806 LYS807 ARG808 LEU809 LYS810 GLU811 LEU812 LEU813 ALA814 LEU815 ALA816 GLU817 ARG818 SER819 GLN820 ARG821 LYS822 LEU823 ALA824 SER825 PRO826 GLY827 PHE828 ARG829 GLU830 LYS831 ALA832 PRO833 LYS834 GLU835 VAL836 VAL837 GLU838 ALA839 GLU840 GLU841 ALA842 ARG843 LEU844 LYS845 GLU846 ASN847 LEU848 GLU849 GLN850 ALA851 GLU852 ARG853 ILE854 ARG855 GLU856 ALA857 LEU858 SER859 GLN860 ILE861 GLY862

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany