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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF HUMAN ISOVALERYL-COA DEHYDROGENASE AT 2.6 ANGSTROMS RESOLUTION: STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY
Keywords OXIDOREDUCTASE, ACYL-COA DEHYDROGENASE, FLAVOPROTEIN, ISOVALERYL-COA, ISOVALERIC ACIDEMIA
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1IVH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ISOVALERYL-COA DEHYDROGENASE  A 387 2960 0
2  Protein   ISOVALERYL-COA DEHYDROGENASE  B 387 2960 0
3  Protein   ISOVALERYL-COA DEHYDROGENASE  C 387 2960 0
4  Protein   ISOVALERYL-COA DEHYDROGENASE  D 387 2960 0
5  Ligand   ISOVALERYL-COA DEHYDROGENASE  A 2 0 102
6  Ligand   ISOVALERYL-COA DEHYDROGENASE  B 2 0 102
7  Ligand   ISOVALERYL-COA DEHYDROGENASE  C 2 0 102
8  Ligand   ISOVALERYL-COA DEHYDROGENASE  D 2 0 102
9 Water     215 0 215
total       1771 11840 623
Proteins
Unit 1 VAL6 ASP7 ASP8 ALA9 ILE10 ASN11 GLY12 LEU13 SER14 GLU15 GLU16 GLN17 ARG18 GLN19 LEU20 ARG21 GLN22 THR23 MET24 ALA25 LYS26 PHE27 LEU28 GLN29 GLU30 HIS31 LEU32 ALA33 PRO34 LYS35 ALA36 GLN37 GLU38 ILE39 ASP40 ARG41 SER42 ASN43 GLU44 PHE45 LYS46 ASN47 LEU48 ARG49 GLU50 PHE51 TRP52 LYS53 GLN54 LEU55 GLY56 ASN57 LEU58 GLY59 VAL60 LEU61 GLY62 ILE63 THR64 ALA65 PRO66 VAL67 GLN68 TYR69 GLY70 GLY71 SER72 GLY73 LEU74 GLY75 TYR76 LEU77 GLU78 HIS79 VAL80 LEU81 VAL82 MET83 GLU84 GLU85 ILE86 SER87 ARG88 ALA89 SER90 GLY91 ALA92 VAL93 GLY94 LEU95 SER96 TYR97 GLY98 ALA99 HIS100 SER101 ASN102 LEU103 CYS104 ILE105 ASN106 GLN107 LEU108 VAL109 ARG110 ASN111 GLY112 ASN113 GLU114 ALA115 GLN116 LYS117 GLU118 LYS119 TYR120 LEU121 PRO122 LYS123 LEU124 ILE125 SER126 GLY127 GLU128 TYR129 ILE130 GLY131 ALA132 LEU133 ALA134 MET135 SER136 GLU137 PRO138 ASN139 ALA140 GLY141 SER142 ASP143 VAL144 VAL145 SER146 MET147 LYS148 LEU149 LYS150 ALA151 GLU152 LYS153 LYS154 GLY155 ASN156 HIS157 TYR158 ILE159 LEU160 ASN161 GLY162 ASN163 LYS164 PHE165 TRP166 ILE167 THR168 ASN169 GLY170 PRO171 ASP172 ALA173 ASP174 VAL175 LEU176 ILE177 VAL178 TYR179 ALA180 LYS181 THR182 ASP183 LEU184 ALA185 ALA186 VAL187 PRO188 ALA189 SER190 ARG191 GLY192 ILE193 THR194 ALA195 PHE196 ILE197 VAL198 GLU199 LYS200 GLY201 MET202 PRO203 GLY204 PHE205 SER206 THR207 SER208 LYS209 LYS210 LEU211 ASP212 LYS213 LEU214 GLY215 MET216 ARG217 GLY218 SER219 ASN220 THR221 CYS222 GLU223 LEU224 ILE225 PHE226 GLU227 ASP228 CYS229 LYS230 ILE231 PRO232 ALA233 ALA234 ASN235 ILE236 LEU237 GLY238 HIS239 GLU240 ASN241 LYS242 GLY243 VAL244 TYR245 VAL246 LEU247 MET248 SER249 GLY250 LEU251 ASP252 LEU253 GLU254 ARG255 LEU256 VAL257 LEU258 ALA259 GLY260 GLY261 PRO262 LEU263 GLY264 LEU265 MET266 GLN267 ALA268 VAL269 LEU270 ASP271 HIS272 THR273 ILE274 PRO275 TYR276 LEU277 HIS278 VAL279 ARG280 GLU281 ALA282 PHE283 GLY284 GLN285 LYS286 ILE287 GLY288 HIS289 PHE290 GLN291 LEU292 MET293 GLN294 GLY295 LYS296 MET297 ALA298 ASP299 MET300 TYR301 THR302 ARG303 LEU304 MET305 ALA306 CYS307 ARG308 GLN309 TYR310 VAL311 TYR312 ASN313 VAL314 ALA315 LYS316 ALA317 CYS318 ASP319 GLU320 GLY321 HIS322 CYS323 THR324 ALA325 LYS326 ASP327 CYS328 ALA329 GLY330 VAL331 ILE332 LEU333 TYR334 SER335 ALA336 GLU337 CYS338 ALA339 THR340 GLN341 VAL342 ALA343 LEU344 ASP345 GLY346 ILE347 GLN348 CYS349 PHE350 GLY351 GLY352 ASN353 GLY354 TYR355 ILE356 ASN357 ASP358 PHE359 PRO360 MET361 GLY362 ARG363 PHE364 LEU365 ARG366 ASP367 ALA368 LYS369 LEU370 TYR371 GLU372 ILE373 GLY374 ALA375 GLY376 THR377 SER378 GLU379 VAL380 ARG381 ARG382 LEU383 VAL384 ILE385 GLY386 ARG387 ALA388 PHE389 ASN390 ALA391 ASP392
Unit 2 VAL6 ASP7 ASP8 ALA9 ILE10 ASN11 GLY12 LEU13 SER14 GLU15 GLU16 GLN17 ARG18 GLN19 LEU20 ARG21 GLN22 THR23 MET24 ALA25 LYS26 PHE27 LEU28 GLN29 GLU30 HIS31 LEU32 ALA33 PRO34 LYS35 ALA36 GLN37 GLU38 ILE39 ASP40 ARG41 SER42 ASN43 GLU44 PHE45 LYS46 ASN47 LEU48 ARG49 GLU50 PHE51 TRP52 LYS53 GLN54 LEU55 GLY56 ASN57 LEU58 GLY59 VAL60 LEU61 GLY62 ILE63 THR64 ALA65 PRO66 VAL67 GLN68 TYR69 GLY70 GLY71 SER72 GLY73 LEU74 GLY75 TYR76 LEU77 GLU78 HIS79 VAL80 LEU81 VAL82 MET83 GLU84 GLU85 ILE86 SER87 ARG88 ALA89 SER90 GLY91 ALA92 VAL93 GLY94 LEU95 SER96 TYR97 GLY98 ALA99 HIS100 SER101 ASN102 LEU103 CYS104 ILE105 ASN106 GLN107 LEU108 VAL109 ARG110 ASN111 GLY112 ASN113 GLU114 ALA115 GLN116 LYS117 GLU118 LYS119 TYR120 LEU121 PRO122 LYS123 LEU124 ILE125 SER126 GLY127 GLU128 TYR129 ILE130 GLY131 ALA132 LEU133 ALA134 MET135 SER136 GLU137 PRO138 ASN139 ALA140 GLY141 SER142 ASP143 VAL144 VAL145 SER146 MET147 LYS148 LEU149 LYS150 ALA151 GLU152 LYS153 LYS154 GLY155 ASN156 HIS157 TYR158 ILE159 LEU160 ASN161 GLY162 ASN163 LYS164 PHE165 TRP166 ILE167 THR168 ASN169 GLY170 PRO171 ASP172 ALA173 ASP174 VAL175 LEU176 ILE177 VAL178 TYR179 ALA180 LYS181 THR182 ASP183 LEU184 ALA185 ALA186 VAL187 PRO188 ALA189 SER190 ARG191 GLY192 ILE193 THR194 ALA195 PHE196 ILE197 VAL198 GLU199 LYS200 GLY201 MET202 PRO203 GLY204 PHE205 SER206 THR207 SER208 LYS209 LYS210 LEU211 ASP212 LYS213 LEU214 GLY215 MET216 ARG217 GLY218 SER219 ASN220 THR221 CYS222 GLU223 LEU224 ILE225 PHE226 GLU227 ASP228 CYS229 LYS230 ILE231 PRO232 ALA233 ALA234 ASN235 ILE236 LEU237 GLY238 HIS239 GLU240 ASN241 LYS242 GLY243 VAL244 TYR245 VAL246 LEU247 MET248 SER249 GLY250 LEU251 ASP252 LEU253 GLU254 ARG255 LEU256 VAL257 LEU258 ALA259 GLY260 GLY261 PRO262 LEU263 GLY264 LEU265 MET266 GLN267 ALA268 VAL269 LEU270 ASP271 HIS272 THR273 ILE274 PRO275 TYR276 LEU277 HIS278 VAL279 ARG280 GLU281 ALA282 PHE283 GLY284 GLN285 LYS286 ILE287 GLY288 HIS289 PHE290 GLN291 LEU292 MET293 GLN294 GLY295 LYS296 MET297 ALA298 ASP299 MET300 TYR301 THR302 ARG303 LEU304 MET305 ALA306 CYS307 ARG308 GLN309 TYR310 VAL311 TYR312 ASN313 VAL314 ALA315 LYS316 ALA317 CYS318 ASP319 GLU320 GLY321 HIS322 CYS323 THR324 ALA325 LYS326 ASP327 CYS328 ALA329 GLY330 VAL331 ILE332 LEU333 TYR334 SER335 ALA336 GLU337 CYS338 ALA339 THR340 GLN341 VAL342 ALA343 LEU344 ASP345 GLY346 ILE347 GLN348 CYS349 PHE350 GLY351 GLY352 ASN353 GLY354 TYR355 ILE356 ASN357 ASP358 PHE359 PRO360 MET361 GLY362 ARG363 PHE364 LEU365 ARG366 ASP367 ALA368 LYS369 LEU370 TYR371 GLU372 ILE373 GLY374 ALA375 GLY376 THR377 SER378 GLU379 VAL380 ARG381 ARG382 LEU383 VAL384 ILE385 GLY386 ARG387 ALA388 PHE389 ASN390 ALA391 ASP392
Unit 3 VAL6 ASP7 ASP8 ALA9 ILE10 ASN11 GLY12 LEU13 SER14 GLU15 GLU16 GLN17 ARG18 GLN19 LEU20 ARG21 GLN22 THR23 MET24 ALA25 LYS26 PHE27 LEU28 GLN29 GLU30 HIS31 LEU32 ALA33 PRO34 LYS35 ALA36 GLN37 GLU38 ILE39 ASP40 ARG41 SER42 ASN43 GLU44 PHE45 LYS46 ASN47 LEU48 ARG49 GLU50 PHE51 TRP52 LYS53 GLN54 LEU55 GLY56 ASN57 LEU58 GLY59 VAL60 LEU61 GLY62 ILE63 THR64 ALA65 PRO66 VAL67 GLN68 TYR69 GLY70 GLY71 SER72 GLY73 LEU74 GLY75 TYR76 LEU77 GLU78 HIS79 VAL80 LEU81 VAL82 MET83 GLU84 GLU85 ILE86 SER87 ARG88 ALA89 SER90 GLY91 ALA92 VAL93 GLY94 LEU95 SER96 TYR97 GLY98 ALA99 HIS100 SER101 ASN102 LEU103 CYS104 ILE105 ASN106 GLN107 LEU108 VAL109 ARG110 ASN111 GLY112 ASN113 GLU114 ALA115 GLN116 LYS117 GLU118 LYS119 TYR120 LEU121 PRO122 LYS123 LEU124 ILE125 SER126 GLY127 GLU128 TYR129 ILE130 GLY131 ALA132 LEU133 ALA134 MET135 SER136 GLU137 PRO138 ASN139 ALA140 GLY141 SER142 ASP143 VAL144 VAL145 SER146 MET147 LYS148 LEU149 LYS150 ALA151 GLU152 LYS153 LYS154 GLY155 ASN156 HIS157 TYR158 ILE159 LEU160 ASN161 GLY162 ASN163 LYS164 PHE165 TRP166 ILE167 THR168 ASN169 GLY170 PRO171 ASP172 ALA173 ASP174 VAL175 LEU176 ILE177 VAL178 TYR179 ALA180 LYS181 THR182 ASP183 LEU184 ALA185 ALA186 VAL187 PRO188 ALA189 SER190 ARG191 GLY192 ILE193 THR194 ALA195 PHE196 ILE197 VAL198 GLU199 LYS200 GLY201 MET202 PRO203 GLY204 PHE205 SER206 THR207 SER208 LYS209 LYS210 LEU211 ASP212 LYS213 LEU214 GLY215 MET216 ARG217 GLY218 SER219 ASN220 THR221 CYS222 GLU223 LEU224 ILE225 PHE226 GLU227 ASP228 CYS229 LYS230 ILE231 PRO232 ALA233 ALA234 ASN235 ILE236 LEU237 GLY238 HIS239 GLU240 ASN241 LYS242 GLY243 VAL244 TYR245 VAL246 LEU247 MET248 SER249 GLY250 LEU251 ASP252 LEU253 GLU254 ARG255 LEU256 VAL257 LEU258 ALA259 GLY260 GLY261 PRO262 LEU263 GLY264 LEU265 MET266 GLN267 ALA268 VAL269 LEU270 ASP271 HIS272 THR273 ILE274 PRO275 TYR276 LEU277 HIS278 VAL279 ARG280 GLU281 ALA282 PHE283 GLY284 GLN285 LYS286 ILE287 GLY288 HIS289 PHE290 GLN291 LEU292 MET293 GLN294 GLY295 LYS296 MET297 ALA298 ASP299 MET300 TYR301 THR302 ARG303 LEU304 MET305 ALA306 CYS307 ARG308 GLN309 TYR310 VAL311 TYR312 ASN313 VAL314 ALA315 LYS316 ALA317 CYS318 ASP319 GLU320 GLY321 HIS322 CYS323 THR324 ALA325 LYS326 ASP327 CYS328 ALA329 GLY330 VAL331 ILE332 LEU333 TYR334 SER335 ALA336 GLU337 CYS338 ALA339 THR340 GLN341 VAL342 ALA343 LEU344 ASP345 GLY346 ILE347 GLN348 CYS349 PHE350 GLY351 GLY352 ASN353 GLY354 TYR355 ILE356 ASN357 ASP358 PHE359 PRO360 MET361 GLY362 ARG363 PHE364 LEU365 ARG366 ASP367 ALA368 LYS369 LEU370 TYR371 GLU372 ILE373 GLY374 ALA375 GLY376 THR377 SER378 GLU379 VAL380 ARG381 ARG382 LEU383 VAL384 ILE385 GLY386 ARG387 ALA388 PHE389 ASN390 ALA391 ASP392
Unit 4 VAL6 ASP7 ASP8 ALA9 ILE10 ASN11 GLY12 LEU13 SER14 GLU15 GLU16 GLN17 ARG18 GLN19 LEU20 ARG21 GLN22 THR23 MET24 ALA25 LYS26 PHE27 LEU28 GLN29 GLU30 HIS31 LEU32 ALA33 PRO34 LYS35 ALA36 GLN37 GLU38 ILE39 ASP40 ARG41 SER42 ASN43 GLU44 PHE45 LYS46 ASN47 LEU48 ARG49 GLU50 PHE51 TRP52 LYS53 GLN54 LEU55 GLY56 ASN57 LEU58 GLY59 VAL60 LEU61 GLY62 ILE63 THR64 ALA65 PRO66 VAL67 GLN68 TYR69 GLY70 GLY71 SER72 GLY73 LEU74 GLY75 TYR76 LEU77 GLU78 HIS79 VAL80 LEU81 VAL82 MET83 GLU84 GLU85 ILE86 SER87 ARG88 ALA89 SER90 GLY91 ALA92 VAL93 GLY94 LEU95 SER96 TYR97 GLY98 ALA99 HIS100 SER101 ASN102 LEU103 CYS104 ILE105 ASN106 GLN107 LEU108 VAL109 ARG110 ASN111 GLY112 ASN113 GLU114 ALA115 GLN116 LYS117 GLU118 LYS119 TYR120 LEU121 PRO122 LYS123 LEU124 ILE125 SER126 GLY127 GLU128 TYR129 ILE130 GLY131 ALA132 LEU133 ALA134 MET135 SER136 GLU137 PRO138 ASN139 ALA140 GLY141 SER142 ASP143 VAL144 VAL145 SER146 MET147 LYS148 LEU149 LYS150 ALA151 GLU152 LYS153 LYS154 GLY155 ASN156 HIS157 TYR158 ILE159 LEU160 ASN161 GLY162 ASN163 LYS164 PHE165 TRP166 ILE167 THR168 ASN169 GLY170 PRO171 ASP172 ALA173 ASP174 VAL175 LEU176 ILE177 VAL178 TYR179 ALA180 LYS181 THR182 ASP183 LEU184 ALA185 ALA186 VAL187 PRO188 ALA189 SER190 ARG191 GLY192 ILE193 THR194 ALA195 PHE196 ILE197 VAL198 GLU199 LYS200 GLY201 MET202 PRO203 GLY204 PHE205 SER206 THR207 SER208 LYS209 LYS210 LEU211 ASP212 LYS213 LEU214 GLY215 MET216 ARG217 GLY218 SER219 ASN220 THR221 CYS222 GLU223 LEU224 ILE225 PHE226 GLU227 ASP228 CYS229 LYS230 ILE231 PRO232 ALA233 ALA234 ASN235 ILE236 LEU237 GLY238 HIS239 GLU240 ASN241 LYS242 GLY243 VAL244 TYR245 VAL246 LEU247 MET248 SER249 GLY250 LEU251 ASP252 LEU253 GLU254 ARG255 LEU256 VAL257 LEU258 ALA259 GLY260 GLY261 PRO262 LEU263 GLY264 LEU265 MET266 GLN267 ALA268 VAL269 LEU270 ASP271 HIS272 THR273 ILE274 PRO275 TYR276 LEU277 HIS278 VAL279 ARG280 GLU281 ALA282 PHE283 GLY284 GLN285 LYS286 ILE287 GLY288 HIS289 PHE290 GLN291 LEU292 MET293 GLN294 GLY295 LYS296 MET297 ALA298 ASP299 MET300 TYR301 THR302 ARG303 LEU304 MET305 ALA306 CYS307 ARG308 GLN309 TYR310 VAL311 TYR312 ASN313 VAL314 ALA315 LYS316 ALA317 CYS318 ASP319 GLU320 GLY321 HIS322 CYS323 THR324 ALA325 LYS326 ASP327 CYS328 ALA329 GLY330 VAL331 ILE332 LEU333 TYR334 SER335 ALA336 GLU337 CYS338 ALA339 THR340 GLN341 VAL342 ALA343 LEU344 ASP345 GLY346 ILE347 GLN348 CYS349 PHE350 GLY351 GLY352 ASN353 GLY354 TYR355 ILE356 ASN357 ASP358 PHE359 PRO360 MET361 GLY362 ARG363 PHE364 LEU365 ARG366 ASP367 ALA368 LYS369 LEU370 TYR371 GLU372 ILE373 GLY374 ALA375 GLY376 THR377 SER378 GLU379 VAL380 ARG381 ARG382 LEU383 VAL384 ILE385 GLY386 ARG387 ALA388 PHE389 ASN390 ALA391 ASP392
Ligands
Unit 5 FAD399 COS400
Unit 6 FAD399 COS400
Unit 7 FAD399 COS400
Unit 8 FAD399 COS400
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany