Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title MODELLING OF THE THREE-DIMENSIONAL ARCHITECTURE OF GROUP I CATALYTIC INTRONS BASED ON COMPARATIVE SEQUENCE ANALYSIS
Keywords INTRON
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1IPT     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 5 100 0
2  RNA    B 13 278 0
3  RNA    C 22 478 0
4  RNA    D 18 381 0
5  RNA    E 31 666 0
6  RNA    F 19 406 0
7  RNA    G 10 215 0
total       118 2524 0

Nucleic acids
Unit 1 U2 C3 U4 C5 U6
Unit 2 U15 A16 C17 C18 U19 U20 U21 G22 G23 A24 G25 G26 A28
Unit 3 G96 A97 C98 C99 G100 U101 C102 A103 A104 A105 U106 U107 G108 C109 G110 G111 G112 A113 A114 A115 G116 G117
Unit 4 C204 U205 A206 A207 C208 C209 A210 C211 G212 C213 A214 G215 C216 C217 A218 A219 G220 U221
Unit 5 A252 U253 G254 C255 A256 G257 U258 U259 C260 A261 C262 A263 G264 A265 C266 U267 A268 A269 A270 U271 G272 U273 C274 G275 G276 U277 C278 G279 G280 G281 G282
Unit 6 C296 U297 C298 A299 U300 A301 A302 G303 A304 U305 A306 U307 A308 G309 U310 C311 G312 G313 A314
Unit 7 U412 C413 G414 U415 A416 A417 G418 G419 U420 A421

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany