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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF CD40L IN COMPLEX WITH THE FAB FRAGMENT OF HUMANIZED 5C8 ANTIBODY
Keywords BETA-SHEET SANDWICH, IMMUNOGLOBULIN, CYTOKINE/IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1I9R     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CD40 LIGAND  A 143 1092 0
2  Protein   CD40 LIGAND  B 143 1092 0
3  Protein   CD40 LIGAND  C 143 1092 0
4  Protein   IMMUNOGLOBULIN H  H 219 1637 0
5  Protein   IMMUNOGLOBULIN L  L 215 1660 0
6  Protein   IMMUNOGLOBULIN H  K 219 1637 0
7  Protein   IMMUNOGLOBULIN L  M 215 1660 0
8  Protein   IMMUNOGLOBULIN H  X 219 1637 0
9  Protein   IMMUNOGLOBULIN L  Y 215 1660 0
10  Ligand   IMMUNOGLOBULIN H  H 1 0 1
11  Ligand   IMMUNOGLOBULIN H  K 1 0 1
12  Ligand   IMMUNOGLOBULIN H  X 1 0 1
total       1734 13167 3
Proteins
Unit 1 ASN119 PRO120 GLN121 ILE122 ALA123 ALA124 HIS125 VAL126 ILE127 SER128 GLU129 ALA130 SER131 SER132 LYS133 THR134 THR135 SER136 VAL137 LEU138 GLN139 TRP140 ALA141 GLU142 LYS143 GLY144 TYR145 TYR146 THR147 MET148 SER149 ASN150 ASN151 LEU152 VAL153 THR154 LEU155 GLU156 ASN157 GLY158 LYS159 GLN160 LEU161 THR162 VAL163 LYS164 ARG165 GLN166 GLY167 LEU168 TYR169 TYR170 ILE171 TYR172 ALA173 GLN174 VAL175 THR176 PHE177 CYS178 SER179 ASN180 ARG181 GLU182 ALA183 SER184 SER185 GLN186 ALA187 PRO188 PHE189 ILE190 ALA191 SER192 LEU193 CYS194 LEU195 LYS196 SER197 PRO198 GLY199 ARG200 PHE201 GLU202 ARG203 ILE204 LEU205 LEU206 ARG207 ALA208 ALA209 ASN210 THR211 HIS212 SER213 SER214 ALA215 LYS216 PRO217 CYS218 GLY219 GLN220 GLN221 SER222 ILE223 HIS224 LEU225 GLY226 GLY227 VAL228 PHE229 GLU230 LEU231 GLN232 PRO233 GLY234 ALA235 SER236 VAL237 PHE238 VAL239 ASN240 VAL241 THR242 ASP243 PRO244 SER245 GLN246 VAL247 SER248 HIS249 GLY250 THR251 GLY252 PHE253 THR254 SER255 PHE256 GLY257 LEU258 LEU259 LYS260 LEU261
Unit 2 ASN119 PRO120 GLN121 ILE122 ALA123 ALA124 HIS125 VAL126 ILE127 SER128 GLU129 ALA130 SER131 SER132 LYS133 THR134 THR135 SER136 VAL137 LEU138 GLN139 TRP140 ALA141 GLU142 LYS143 GLY144 TYR145 TYR146 THR147 MET148 SER149 ASN150 ASN151 LEU152 VAL153 THR154 LEU155 GLU156 ASN157 GLY158 LYS159 GLN160 LEU161 THR162 VAL163 LYS164 ARG165 GLN166 GLY167 LEU168 TYR169 TYR170 ILE171 TYR172 ALA173 GLN174 VAL175 THR176 PHE177 CYS178 SER179 ASN180 ARG181 GLU182 ALA183 SER184 SER185 GLN186 ALA187 PRO188 PHE189 ILE190 ALA191 SER192 LEU193 CYS194 LEU195 LYS196 SER197 PRO198 GLY199 ARG200 PHE201 GLU202 ARG203 ILE204 LEU205 LEU206 ARG207 ALA208 ALA209 ASN210 THR211 HIS212 SER213 SER214 ALA215 LYS216 PRO217 CYS218 GLY219 GLN220 GLN221 SER222 ILE223 HIS224 LEU225 GLY226 GLY227 VAL228 PHE229 GLU230 LEU231 GLN232 PRO233 GLY234 ALA235 SER236 VAL237 PHE238 VAL239 ASN240 VAL241 THR242 ASP243 PRO244 SER245 GLN246 VAL247 SER248 HIS249 GLY250 THR251 GLY252 PHE253 THR254 SER255 PHE256 GLY257 LEU258 LEU259 LYS260 LEU261
Unit 3 ASN119 PRO120 GLN121 ILE122 ALA123 ALA124 HIS125 VAL126 ILE127 SER128 GLU129 ALA130 SER131 SER132 LYS133 THR134 THR135 SER136 VAL137 LEU138 GLN139 TRP140 ALA141 GLU142 LYS143 GLY144 TYR145 TYR146 THR147 MET148 SER149 ASN150 ASN151 LEU152 VAL153 THR154 LEU155 GLU156 ASN157 GLY158 LYS159 GLN160 LEU161 THR162 VAL163 LYS164 ARG165 GLN166 GLY167 LEU168 TYR169 TYR170 ILE171 TYR172 ALA173 GLN174 VAL175 THR176 PHE177 CYS178 SER179 ASN180 ARG181 GLU182 ALA183 SER184 SER185 GLN186 ALA187 PRO188 PHE189 ILE190 ALA191 SER192 LEU193 CYS194 LEU195 LYS196 SER197 PRO198 GLY199 ARG200 PHE201 GLU202 ARG203 ILE204 LEU205 LEU206 ARG207 ALA208 ALA209 ASN210 THR211 HIS212 SER213 SER214 ALA215 LYS216 PRO217 CYS218 GLY219 GLN220 GLN221 SER222 ILE223 HIS224 LEU225 GLY226 GLY227 VAL228 PHE229 GLU230 LEU231 GLN232 PRO233 GLY234 ALA235 SER236 VAL237 PHE238 VAL239 ASN240 VAL241 THR242 ASP243 PRO244 SER245 GLN246 VAL247 SER248 HIS249 GLY250 THR251 GLY252 PHE253 THR254 SER255 PHE256 GLY257 LEU258 LEU259 LYS260 LEU261
Unit 4 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 ILE28 PHE29 THR30 SER31 TYR32 TYR33 MET34 TYR35 TRP36 VAL37 LYS38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 GLU50 ILE51 ASN52 PRO53 SER54 ASN55 GLY56 ASP57 THR58 ASN59 PHE60 ASN61 GLU62 LYS63 PHE64 LYS65 SER66 LYS67 ALA68 THR69 LEU70 THR71 VAL72 ASP73 LYS74 SER75 ALA76 SER77 THR78 ALA79 TYR80 MET81 GLU82 LEU83 SER84 SER85 LEU86 ARG87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 THR97 ARG98 SER99 ASP100 GLY101 ARG102 ASN103 ASP104 MET105 ASP106 SER107 TRP108 GLY109 GLN110 GLY111 THR112 LEU113 VAL114 THR115 VAL116 SER117 SER118 ALA119 SER120 THR121 LYS122 GLY123 PRO124 SER125 VAL126 PHE127 PRO128 LEU129 ALA130 PRO131 SER132 SER133 LYS134 SER135 THR136 SER137 GLY138 GLY139 THR140 ALA141 ALA142 LEU143 GLY144 CYS145 LEU146 VAL147 LYS148 ASP149 TYR150 PHE151 PRO152 GLU153 PRO154 VAL155 THR156 VAL157 SER158 TRP159 ASN160 SER161 GLY162 ALA163 LEU164 THR165 SER166 GLY167 VAL168 HIS169 THR170 PHE171 PRO172 ALA173 VAL174 LEU175 GLN176 SER177 SER178 GLY179 LEU180 TYR181 SER182 LEU183 SER184 SER185 VAL186 VAL187 THR188 VAL189 PRO190 SER191 SER192 SER193 LEU194 GLY195 THR196 GLN197 THR198 TYR199 ILE200 CYS201 ASN202 VAL203 ASN204 HIS205 LYS206 PRO207 SER208 ASN209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 VAL216 GLU217 PRO218 LYS219
Unit 5 ASP1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 ALA9 THR10 LEU11 SER12 VAL13 SER14 PRO15 GLY16 GLU17 ARG18 ALA19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ARG28 VAL29 SER30 SER31 SER32 THR33 TYR34 SER35 TYR36 MET37 HIS38 TRP39 TYR40 GLN41 GLN42 LYS43 PRO44 GLY45 GLN46 PRO47 PRO48 LYS49 LEU50 LEU51 ILE52 LYS53 TYR54 ALA55 SER56 ASN57 LEU58 GLU59 SER60 GLY61 VAL62 PRO63 ALA64 ARG65 PHE66 SER67 GLY68 SER69 GLY70 SER71 GLY72 THR73 ASP74 PHE75 THR76 LEU77 THR78 ILE79 SER80 SER81 VAL82 GLU83 PRO84 GLU85 ASP86 PHE87 ALA88 THR89 TYR90 TYR91 CYS92 GLN93 HIS94 SER95 TRP96 GLU97 ILE98 PRO99 PRO100 THR101 PHE102 GLY103 GLY104 GLY105 THR106 LYS107 LEU108 GLU109 ILE110 LYS111 ARG112 THR113 VAL114 ALA115 ALA116 PRO117 SER118 VAL119 PHE120 ILE121 PHE122 PRO123 PRO124 SER125 ASP126 GLU127 GLN128 LEU129 LYS130 SER131 GLY132 THR133 ALA134 SER135 VAL136 VAL137 CYS138 LEU139 LEU140 ASN141 ASN142 PHE143 TYR144 PRO145 ARG146 GLU147 ALA148 LYS149 VAL150 GLN151 TRP152 LYS153 VAL154 ASP155 ASN156 ALA157 LEU158 GLN159 SER160 GLY161 ASN162 SER163 GLN164 GLU165 SER166 VAL167 THR168 GLU169 GLN170 ASP171 SER172 LYS173 ASP174 SER175 THR176 TYR177 SER178 LEU179 SER180 SER181 THR182 LEU183 THR184 LEU185 SER186 LYS187 ALA188 ASP189 TYR190 GLU191 LYS192 HIS193 LYS194 VAL195 TYR196 ALA197 CYS198 GLU199 VAL200 THR201 HIS202 GLN203 GLY204 LEU205 SER206 SER207 PRO208 VAL209 THR210 LYS211 SER212 PHE213 ASN214 ARG215
Unit 6 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 ILE28 PHE29 THR30 SER31 TYR32 TYR33 MET34 TYR35 TRP36 VAL37 LYS38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 GLU50 ILE51 ASN52 PRO53 SER54 ASN55 GLY56 ASP57 THR58 ASN59 PHE60 ASN61 GLU62 LYS63 PHE64 LYS65 SER66 LYS67 ALA68 THR69 LEU70 THR71 VAL72 ASP73 LYS74 SER75 ALA76 SER77 THR78 ALA79 TYR80 MET81 GLU82 LEU83 SER84 SER85 LEU86 ARG87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 THR97 ARG98 SER99 ASP100 GLY101 ARG102 ASN103 ASP104 MET105 ASP106 SER107 TRP108 GLY109 GLN110 GLY111 THR112 LEU113 VAL114 THR115 VAL116 SER117 SER118 ALA119 SER120 THR121 LYS122 GLY123 PRO124 SER125 VAL126 PHE127 PRO128 LEU129 ALA130 PRO131 SER132 SER133 LYS134 SER135 THR136 SER137 GLY138 GLY139 THR140 ALA141 ALA142 LEU143 GLY144 CYS145 LEU146 VAL147 LYS148 ASP149 TYR150 PHE151 PRO152 GLU153 PRO154 VAL155 THR156 VAL157 SER158 TRP159 ASN160 SER161 GLY162 ALA163 LEU164 THR165 SER166 GLY167 VAL168 HIS169 THR170 PHE171 PRO172 ALA173 VAL174 LEU175 GLN176 SER177 SER178 GLY179 LEU180 TYR181 SER182 LEU183 SER184 SER185 VAL186 VAL187 THR188 VAL189 PRO190 SER191 SER192 SER193 LEU194 GLY195 THR196 GLN197 THR198 TYR199 ILE200 CYS201 ASN202 VAL203 ASN204 HIS205 LYS206 PRO207 SER208 ASN209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 VAL216 GLU217 PRO218 LYS219
Unit 7 ASP1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 ALA9 THR10 LEU11 SER12 VAL13 SER14 PRO15 GLY16 GLU17 ARG18 ALA19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ARG28 VAL29 SER30 SER31 SER32 THR33 TYR34 SER35 TYR36 MET37 HIS38 TRP39 TYR40 GLN41 GLN42 LYS43 PRO44 GLY45 GLN46 PRO47 PRO48 LYS49 LEU50 LEU51 ILE52 LYS53 TYR54 ALA55 SER56 ASN57 LEU58 GLU59 SER60 GLY61 VAL62 PRO63 ALA64 ARG65 PHE66 SER67 GLY68 SER69 GLY70 SER71 GLY72 THR73 ASP74 PHE75 THR76 LEU77 THR78 ILE79 SER80 SER81 VAL82 GLU83 PRO84 GLU85 ASP86 PHE87 ALA88 THR89 TYR90 TYR91 CYS92 GLN93 HIS94 SER95 TRP96 GLU97 ILE98 PRO99 PRO100 THR101 PHE102 GLY103 GLY104 GLY105 THR106 LYS107 LEU108 GLU109 ILE110 LYS111 ARG112 THR113 VAL114 ALA115 ALA116 PRO117 SER118 VAL119 PHE120 ILE121 PHE122 PRO123 PRO124 SER125 ASP126 GLU127 GLN128 LEU129 LYS130 SER131 GLY132 THR133 ALA134 SER135 VAL136 VAL137 CYS138 LEU139 LEU140 ASN141 ASN142 PHE143 TYR144 PRO145 ARG146 GLU147 ALA148 LYS149 VAL150 GLN151 TRP152 LYS153 VAL154 ASP155 ASN156 ALA157 LEU158 GLN159 SER160 GLY161 ASN162 SER163 GLN164 GLU165 SER166 VAL167 THR168 GLU169 GLN170 ASP171 SER172 LYS173 ASP174 SER175 THR176 TYR177 SER178 LEU179 SER180 SER181 THR182 LEU183 THR184 LEU185 SER186 LYS187 ALA188 ASP189 TYR190 GLU191 LYS192 HIS193 LYS194 VAL195 TYR196 ALA197 CYS198 GLU199 VAL200 THR201 HIS202 GLN203 GLY204 LEU205 SER206 SER207 PRO208 VAL209 THR210 LYS211 SER212 PHE213 ASN214 ARG215
Unit 8 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 VAL12 LYS13 PRO14 GLY15 ALA16 SER17 VAL18 LYS19 LEU20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 ILE28 PHE29 THR30 SER31 TYR32 TYR33 MET34 TYR35 TRP36 VAL37 LYS38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 GLU50 ILE51 ASN52 PRO53 SER54 ASN55 GLY56 ASP57 THR58 ASN59 PHE60 ASN61 GLU62 LYS63 PHE64 LYS65 SER66 LYS67 ALA68 THR69 LEU70 THR71 VAL72 ASP73 LYS74 SER75 ALA76 SER77 THR78 ALA79 TYR80 MET81 GLU82 LEU83 SER84 SER85 LEU86 ARG87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 THR97 ARG98 SER99 ASP100 GLY101 ARG102 ASN103 ASP104 MET105 ASP106 SER107 TRP108 GLY109 GLN110 GLY111 THR112 LEU113 VAL114 THR115 VAL116 SER117 SER118 ALA119 SER120 THR121 LYS122 GLY123 PRO124 SER125 VAL126 PHE127 PRO128 LEU129 ALA130 PRO131 SER132 SER133 LYS134 SER135 THR136 SER137 GLY138 GLY139 THR140 ALA141 ALA142 LEU143 GLY144 CYS145 LEU146 VAL147 LYS148 ASP149 TYR150 PHE151 PRO152 GLU153 PRO154 VAL155 THR156 VAL157 SER158 TRP159 ASN160 SER161 GLY162 ALA163 LEU164 THR165 SER166 GLY167 VAL168 HIS169 THR170 PHE171 PRO172 ALA173 VAL174 LEU175 GLN176 SER177 SER178 GLY179 LEU180 TYR181 SER182 LEU183 SER184 SER185 VAL186 VAL187 THR188 VAL189 PRO190 SER191 SER192 SER193 LEU194 GLY195 THR196 GLN197 THR198 TYR199 ILE200 CYS201 ASN202 VAL203 ASN204 HIS205 LYS206 PRO207 SER208 ASN209 THR210 LYS211 VAL212 ASP213 LYS214 LYS215 VAL216 GLU217 PRO218 LYS219
Unit 9 ASP1 ILE2 VAL3 LEU4 THR5 GLN6 SER7 PRO8 ALA9 THR10 LEU11 SER12 VAL13 SER14 PRO15 GLY16 GLU17 ARG18 ALA19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ARG28 VAL29 SER30 SER31 SER32 THR33 TYR34 SER35 TYR36 MET37 HIS38 TRP39 TYR40 GLN41 GLN42 LYS43 PRO44 GLY45 GLN46 PRO47 PRO48 LYS49 LEU50 LEU51 ILE52 LYS53 TYR54 ALA55 SER56 ASN57 LEU58 GLU59 SER60 GLY61 VAL62 PRO63 ALA64 ARG65 PHE66 SER67 GLY68 SER69 GLY70 SER71 GLY72 THR73 ASP74 PHE75 THR76 LEU77 THR78 ILE79 SER80 SER81 VAL82 GLU83 PRO84 GLU85 ASP86 PHE87 ALA88 THR89 TYR90 TYR91 CYS92 GLN93 HIS94 SER95 TRP96 GLU97 ILE98 PRO99 PRO100 THR101 PHE102 GLY103 GLY104 GLY105 THR106 LYS107 LEU108 GLU109 ILE110 LYS111 ARG112 THR113 VAL114 ALA115 ALA116 PRO117 SER118 VAL119 PHE120 ILE121 PHE122 PRO123 PRO124 SER125 ASP126 GLU127 GLN128 LEU129 LYS130 SER131 GLY132 THR133 ALA134 SER135 VAL136 VAL137 CYS138 LEU139 LEU140 ASN141 ASN142 PHE143 TYR144 PRO145 ARG146 GLU147 ALA148 LYS149 VAL150 GLN151 TRP152 LYS153 VAL154 ASP155 ASN156 ALA157 LEU158 GLN159 SER160 GLY161 ASN162 SER163 GLN164 GLU165 SER166 VAL167 THR168 GLU169 GLN170 ASP171 SER172 LYS173 ASP174 SER175 THR176 TYR177 SER178 LEU179 SER180 SER181 THR182 LEU183 THR184 LEU185 SER186 LYS187 ALA188 ASP189 TYR190 GLU191 LYS192 HIS193 LYS194 VAL195 TYR196 ALA197 CYS198 GLU199 VAL200 THR201 HIS202 GLN203 GLY204 LEU205 SER206 SER207 PRO208 VAL209 THR210 LYS211 SER212 PHE213 ASN214 ARG215
Ligands
Unit 10 ZN498
Unit 11 ZN499
Unit 12 ZN500
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany