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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A MUTANT IEK CLASS II MHC MOLECULE
Keywords MHC CLASSII, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1I3R     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 182 1495 0
2  Protein   FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURS GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN  B 216 1701 0
3  Protein    C 182 1491 0
4  Protein   FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURS GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN  D 216 1711 0
5  Protein    E 182 1491 0
6  Protein   FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURS GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN  F 216 1701 0
7  Protein    G 182 1491 0
8  Protein   FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURS GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN  H 216 1701 0
9  Ligand    I 2 0 28
10  Ligand    J 2 0 28
11  Ligand    K 2 0 28
12  Ligand    L 2 0 28
13  Ligand    A 1 0 14
14  Ligand   FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURS GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN  B 1 0 14
15  Ligand    C 1 0 14
16  Ligand   FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURS GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN  D 1 0 14
17  Ligand    E 1 0 14
18  Ligand   FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURS GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN  F 1 0 14
19  Ligand    G 1 0 14
20  Ligand   FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURS GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN  H 1 0 14
21 Water     319 0 319
total       1927 12782 543

Proteins
Unit 1 ILE1 LYS2 GLU3 GLU4 HIS5 THR6 ILE7 ILE8 GLN9 ALA10 GLN11 PHE12 TYR13 LEU14 LEU15 PRO16 ASP17 LYS18 ARG19 GLY20 GLU21 PHE22 MET23 PHE24 ASP25 PHE26 ASP27 GLY28 ASP29 GLU30 ILE31 PHE32 HIS33 VAL34 ASP35 ILE36 GLU37 LYS38 SER39 GLU40 THR41 ILE42 TRP43 ARG44 LEU45 GLU46 GLU47 PHE48 ALA49 LYS50 PHE51 ALA52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 ALA59 LEU60 ALA61 ASN62 ILE63 ALA64 VAL65 ASN66 LYS67 ALA68 ASN69 LEU70 ASP71 VAL72 MET73 LYS74 GLU75 ARG76 SER77 ASN78 ASN79 THR80 PRO81 ASP82 ALA83 ASN84 VAL85 ALA86 PRO87 GLU88 VAL89 THR90 VAL91 LEU92 SER93 ARG94 SER95 PRO96 VAL97 ASN98 LEU99 GLY100 GLU101 PRO102 ASN103 ILE104 LEU105 ILE106 CYS107 PHE108 ILE109 ASP110 LYS111 PHE112 SER113 PRO114 PRO115 VAL116 VAL117 ASN118 VAL119 THR120 TRP121 LEU122 ARG123 ASN124 GLY125 ARG126 PRO127 VAL128 THR129 GLU130 GLY131 VAL132 SER133 GLU134 THR135 VAL136 PHE137 LEU138 PRO139 ARG140 ASP141 ASP142 HIS143 LEU144 PHE145 ARG146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 LEU154 PRO155 SER156 THR157 ASP158 ASP159 PHE160 TYR161 ASP162 CYS163 GLU164 VAL165 ASP166 HIS167 TRP168 GLY169 LEU170 GLU171 GLU172 PRO173 LEU174 ARG175 LYS176 HIS177 TRP178 GLU179 PHE180 GLU181 GLU182
Unit 2 GLY1 LYS2 LYS3 VAL4 ILE5 THR6 ALA7 PHE8 ASN9 GLU10 GLY11 LEU12 LYS13 GLY14 GLY15 GLY16 GLY17 SER18 LEU19 VAL20 GLY21 GLY22 GLY23 SER24 GLY25 GLY26 GLY27 GLY28 SER29 ARG30 PRO31 TRP32 PHE33 LEU34 GLU35 TYR36 CYS37 LYS38 SER39 GLU40 CYS41 HIS42 PHE43 TYR44 ASN45 GLY46 THR47 GLN48 ARG49 VAL50 ARG51 LEU52 LEU53 VAL54 ARG55 TYR56 PHE57 TYR58 ASN59 LEU60 GLU61 GLU62 ASN63 LEU64 ARG65 PHE66 ASP67 SER68 ASP69 VAL70 GLY71 GLU72 PHE73 ARG74 ALA75 VAL76 THR77 GLU78 LEU79 GLY80 ARG81 PRO82 ASP83 ALA84 GLU85 ASN86 TRP87 ASN88 SER89 GLN90 PRO91 GLU92 PHE93 LEU94 GLU95 GLN96 LYS97 ARG98 ALA99 GLU100 VAL101 ASP102 THR103 VAL104 CYS105 ARG106 HIS107 ASN108 TYR109 GLU110 ILE111 PHE112 ASP113 ASN114 PHE115 LEU116 VAL117 PRO118 ARG119 ARG120 VAL121 GLU122 PRO123 THR124 VAL125 THR126 VAL127 TYR128 PRO129 THR130 LYS131 THR132 GLN133 PRO134 LEU135 GLU136 HIS137 HIS138 ASN139 LEU140 LEU141 VAL142 CYS143 SER144 VAL145 SER146 ASP147 PHE148 TYR149 PRO150 GLY151 ASN152 ILE153 GLU154 VAL155 ARG156 TRP157 PHE158 ARG159 ASN160 GLY161 LYS162 GLU163 GLU164 LYS165 THR166 GLY167 ILE168 VAL169 SER170 THR171 GLY172 LEU173 VAL174 ARG175 ASN176 GLY177 ASP178 TRP179 THR180 PHE181 GLN182 THR183 LEU184 VAL185 MET186 LEU187 GLU188 THR189 VAL190 PRO191 GLN192 SER193 GLY194 GLU195 VAL196 TYR197 THR198 CYS199 GLN200 VAL201 GLU202 HIS203 PRO204 SER205 LEU206 THR207 ASP208 PRO209 VAL210 THR211 VAL212 GLU213 TRP214 LYS215 ALA216
Unit 3 ILE1 LYS2 GLU3 GLU4 HIS5 THR6 ILE7 ILE8 GLN9 ALA10 GLN11 PHE12 TYR13 LEU14 LEU15 PRO16 ASP17 LYS18 ARG19 GLY20 GLU21 PHE22 MET23 PHE24 ASP25 PHE26 ASP27 GLY28 ASP29 GLU30 ILE31 PHE32 HIS33 VAL34 ASP35 ILE36 GLU37 LYS38 SER39 GLU40 THR41 ILE42 TRP43 ARG44 LEU45 GLU46 GLU47 PHE48 ALA49 LYS50 PHE51 ALA52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 ALA59 LEU60 ALA61 ASN62 ILE63 ALA64 VAL65 ASN66 LYS67 ALA68 ASN69 LEU70 ASP71 VAL72 MET73 LYS74 GLU75 ARG76 SER77 ASN78 ASN79 THR80 PRO81 ASP82 ALA83 ASN84 VAL85 ALA86 PRO87 GLU88 VAL89 THR90 VAL91 LEU92 SER93 ARG94 SER95 PRO96 VAL97 ASN98 LEU99 GLY100 GLU101 PRO102 ASN103 ILE104 LEU105 ILE106 CYS107 PHE108 ILE109 ASP110 LYS111 PHE112 SER113 PRO114 PRO115 VAL116 VAL117 ASN118 VAL119 THR120 TRP121 LEU122 ARG123 ASN124 GLY125 ARG126 PRO127 VAL128 THR129 GLU130 GLY131 VAL132 SER133 GLU134 THR135 VAL136 PHE137 LEU138 PRO139 ARG140 ASP141 ASP142 HIS143 LEU144 PHE145 ARG146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 LEU154 PRO155 SER156 THR157 ASP158 ASP159 PHE160 TYR161 ASP162 CYS163 GLU164 VAL165 ASP166 HIS167 TRP168 GLY169 LEU170 GLU171 GLU172 PRO173 LEU174 ARG175 LYS176 HIS177 TRP178 GLU179 PHE180 GLU181 GLU182
Unit 4 GLY1 LYS2 LYS3 VAL4 ILE5 THR6 ALA7 PHE8 ASN9 GLU10 GLY11 LEU12 LYS13 GLY14 GLY15 GLY16 GLY17 SER18 LEU19 VAL20 GLY21 GLY22 GLY23 SER24 GLY25 GLY26 GLY27 GLY28 SER29 ARG30 PRO31 TRP32 PHE33 LEU34 GLU35 TYR36 CYS37 LYS38 SER39 GLU40 CYS41 HIS42 PHE43 TYR44 ASN45 GLY46 THR47 GLN48 ARG49 VAL50 ARG51 LEU52 LEU53 VAL54 ARG55 TYR56 PHE57 TYR58 ASN59 LEU60 GLU61 GLU62 ASN63 LEU64 ARG65 PHE66 ASP67 SER68 ASP69 VAL70 GLY71 GLU72 PHE73 ARG74 ALA75 VAL76 THR77 GLU78 LEU79 GLY80 ARG81 PRO82 ASP83 ALA84 GLU85 ASN86 TRP87 ASN88 SER89 GLN90 PRO91 GLU92 PHE93 LEU94 GLU95 GLN96 LYS97 ARG98 ALA99 GLU100 VAL101 ASP102 THR103 VAL104 CYS105 ARG106 HIS107 ASN108 TYR109 GLU110 ILE111 PHE112 ASP113 ASN114 PHE115 LEU116 VAL117 PRO118 ARG119 ARG120 VAL121 GLU122 PRO123 THR124 VAL125 THR126 VAL127 TYR128 PRO129 THR130 LYS131 THR132 GLN133 PRO134 LEU135 GLU136 HIS137 HIS138 ASN139 LEU140 LEU141 VAL142 CYS143 SER144 VAL145 SER146 ASP147 PHE148 TYR149 PRO150 GLY151 ASN152 ILE153 GLU154 VAL155 ARG156 TRP157 PHE158 ARG159 ASN160 GLY161 LYS162 GLU163 GLU164 LYS165 THR166 GLY167 ILE168 VAL169 SER170 THR171 GLY172 LEU173 VAL174 ARG175 ASN176 GLY177 ASP178 TRP179 THR180 PHE181 GLN182 THR183 LEU184 VAL185 MET186 LEU187 GLU188 THR189 VAL190 PRO191 GLN192 SER193 GLY194 GLU195 VAL196 TYR197 THR198 CYS199 GLN200 VAL201 GLU202 HIS203 PRO204 SER205 LEU206 THR207 ASP208 PRO209 VAL210 THR211 VAL212 GLU213 TRP214 LYS215 ALA216
Unit 5 ILE1 LYS2 GLU3 GLU4 HIS5 THR6 ILE7 ILE8 GLN9 ALA10 GLN11 PHE12 TYR13 LEU14 LEU15 PRO16 ASP17 LYS18 ARG19 GLY20 GLU21 PHE22 MET23 PHE24 ASP25 PHE26 ASP27 GLY28 ASP29 GLU30 ILE31 PHE32 HIS33 VAL34 ASP35 ILE36 GLU37 LYS38 SER39 GLU40 THR41 ILE42 TRP43 ARG44 LEU45 GLU46 GLU47 PHE48 ALA49 LYS50 PHE51 ALA52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 ALA59 LEU60 ALA61 ASN62 ILE63 ALA64 VAL65 ASN66 LYS67 ALA68 ASN69 LEU70 ASP71 VAL72 MET73 LYS74 GLU75 ARG76 SER77 ASN78 ASN79 THR80 PRO81 ASP82 ALA83 ASN84 VAL85 ALA86 PRO87 GLU88 VAL89 THR90 VAL91 LEU92 SER93 ARG94 SER95 PRO96 VAL97 ASN98 LEU99 GLY100 GLU101 PRO102 ASN103 ILE104 LEU105 ILE106 CYS107 PHE108 ILE109 ASP110 LYS111 PHE112 SER113 PRO114 PRO115 VAL116 VAL117 ASN118 VAL119 THR120 TRP121 LEU122 ARG123 ASN124 GLY125 ARG126 PRO127 VAL128 THR129 GLU130 GLY131 VAL132 SER133 GLU134 THR135 VAL136 PHE137 LEU138 PRO139 ARG140 ASP141 ASP142 HIS143 LEU144 PHE145 ARG146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 LEU154 PRO155 SER156 THR157 ASP158 ASP159 PHE160 TYR161 ASP162 CYS163 GLU164 VAL165 ASP166 HIS167 TRP168 GLY169 LEU170 GLU171 GLU172 PRO173 LEU174 ARG175 LYS176 HIS177 TRP178 GLU179 PHE180 GLU181 GLU182
Unit 6 GLY1 LYS2 LYS3 VAL4 ILE5 THR6 ALA7 PHE8 ASN9 GLU10 GLY11 LEU12 LYS13 GLY14 GLY15 GLY16 GLY17 SER18 LEU19 VAL20 GLY21 GLY22 GLY23 SER24 GLY25 GLY26 GLY27 GLY28 SER29 ARG30 PRO31 TRP32 PHE33 LEU34 GLU35 TYR36 CYS37 LYS38 SER39 GLU40 CYS41 HIS42 PHE43 TYR44 ASN45 GLY46 THR47 GLN48 ARG49 VAL50 ARG51 LEU52 LEU53 VAL54 ARG55 TYR56 PHE57 TYR58 ASN59 LEU60 GLU61 GLU62 ASN63 LEU64 ARG65 PHE66 ASP67 SER68 ASP69 VAL70 GLY71 GLU72 PHE73 ARG74 ALA75 VAL76 THR77 GLU78 LEU79 GLY80 ARG81 PRO82 ASP83 ALA84 GLU85 ASN86 TRP87 ASN88 SER89 GLN90 PRO91 GLU92 PHE93 LEU94 GLU95 GLN96 LYS97 ARG98 ALA99 GLU100 VAL101 ASP102 THR103 VAL104 CYS105 ARG106 HIS107 ASN108 TYR109 GLU110 ILE111 PHE112 ASP113 ASN114 PHE115 LEU116 VAL117 PRO118 ARG119 ARG120 VAL121 GLU122 PRO123 THR124 VAL125 THR126 VAL127 TYR128 PRO129 THR130 LYS131 THR132 GLN133 PRO134 LEU135 GLU136 HIS137 HIS138 ASN139 LEU140 LEU141 VAL142 CYS143 SER144 VAL145 SER146 ASP147 PHE148 TYR149 PRO150 GLY151 ASN152 ILE153 GLU154 VAL155 ARG156 TRP157 PHE158 ARG159 ASN160 GLY161 LYS162 GLU163 GLU164 LYS165 THR166 GLY167 ILE168 VAL169 SER170 THR171 GLY172 LEU173 VAL174 ARG175 ASN176 GLY177 ASP178 TRP179 THR180 PHE181 GLN182 THR183 LEU184 VAL185 MET186 LEU187 GLU188 THR189 VAL190 PRO191 GLN192 SER193 GLY194 GLU195 VAL196 TYR197 THR198 CYS199 GLN200 VAL201 GLU202 HIS203 PRO204 SER205 LEU206 THR207 ASP208 PRO209 VAL210 THR211 VAL212 GLU213 TRP214 LYS215 ALA216
Unit 7 ILE1 LYS2 GLU3 GLU4 HIS5 THR6 ILE7 ILE8 GLN9 ALA10 GLN11 PHE12 TYR13 LEU14 LEU15 PRO16 ASP17 LYS18 ARG19 GLY20 GLU21 PHE22 MET23 PHE24 ASP25 PHE26 ASP27 GLY28 ASP29 GLU30 ILE31 PHE32 HIS33 VAL34 ASP35 ILE36 GLU37 LYS38 SER39 GLU40 THR41 ILE42 TRP43 ARG44 LEU45 GLU46 GLU47 PHE48 ALA49 LYS50 PHE51 ALA52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 ALA59 LEU60 ALA61 ASN62 ILE63 ALA64 VAL65 ASN66 LYS67 ALA68 ASN69 LEU70 ASP71 VAL72 MET73 LYS74 GLU75 ARG76 SER77 ASN78 ASN79 THR80 PRO81 ASP82 ALA83 ASN84 VAL85 ALA86 PRO87 GLU88 VAL89 THR90 VAL91 LEU92 SER93 ARG94 SER95 PRO96 VAL97 ASN98 LEU99 GLY100 GLU101 PRO102 ASN103 ILE104 LEU105 ILE106 CYS107 PHE108 ILE109 ASP110 LYS111 PHE112 SER113 PRO114 PRO115 VAL116 VAL117 ASN118 VAL119 THR120 TRP121 LEU122 ARG123 ASN124 GLY125 ARG126 PRO127 VAL128 THR129 GLU130 GLY131 VAL132 SER133 GLU134 THR135 VAL136 PHE137 LEU138 PRO139 ARG140 ASP141 ASP142 HIS143 LEU144 PHE145 ARG146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 LEU154 PRO155 SER156 THR157 ASP158 ASP159 PHE160 TYR161 ASP162 CYS163 GLU164 VAL165 ASP166 HIS167 TRP168 GLY169 LEU170 GLU171 GLU172 PRO173 LEU174 ARG175 LYS176 HIS177 TRP178 GLU179 PHE180 GLU181 GLU182
Unit 8 GLY1 LYS2 LYS3 VAL4 ILE5 THR6 ALA7 PHE8 ASN9 GLU10 GLY11 LEU12 LYS13 GLY14 GLY15 GLY16 GLY17 SER18 LEU19 VAL20 GLY21 GLY22 GLY23 SER24 GLY25 GLY26 GLY27 GLY28 SER29 ARG30 PRO31 TRP32 PHE33 LEU34 GLU35 TYR36 CYS37 LYS38 SER39 GLU40 CYS41 HIS42 PHE43 TYR44 ASN45 GLY46 THR47 GLN48 ARG49 VAL50 ARG51 LEU52 LEU53 VAL54 ARG55 TYR56 PHE57 TYR58 ASN59 LEU60 GLU61 GLU62 ASN63 LEU64 ARG65 PHE66 ASP67 SER68 ASP69 VAL70 GLY71 GLU72 PHE73 ARG74 ALA75 VAL76 THR77 GLU78 LEU79 GLY80 ARG81 PRO82 ASP83 ALA84 GLU85 ASN86 TRP87 ASN88 SER89 GLN90 PRO91 GLU92 PHE93 LEU94 GLU95 GLN96 LYS97 ARG98 ALA99 GLU100 VAL101 ASP102 THR103 VAL104 CYS105 ARG106 HIS107 ASN108 TYR109 GLU110 ILE111 PHE112 ASP113 ASN114 PHE115 LEU116 VAL117 PRO118 ARG119 ARG120 VAL121 GLU122 PRO123 THR124 VAL125 THR126 VAL127 TYR128 PRO129 THR130 LYS131 THR132 GLN133 PRO134 LEU135 GLU136 HIS137 HIS138 ASN139 LEU140 LEU141 VAL142 CYS143 SER144 VAL145 SER146 ASP147 PHE148 TYR149 PRO150 GLY151 ASN152 ILE153 GLU154 VAL155 ARG156 TRP157 PHE158 ARG159 ASN160 GLY161 LYS162 GLU163 GLU164 LYS165 THR166 GLY167 ILE168 VAL169 SER170 THR171 GLY172 LEU173 VAL174 ARG175 ASN176 GLY177 ASP178 TRP179 THR180 PHE181 GLN182 THR183 LEU184 VAL185 MET186 LEU187 GLU188 THR189 VAL190 PRO191 GLN192 SER193 GLY194 GLU195 VAL196 TYR197 THR198 CYS199 GLN200 VAL201 GLU202 HIS203 PRO204 SER205 LEU206 THR207 ASP208 PRO209 VAL210 THR211 VAL212 GLU213 TRP214 LYS215 ALA216

Ligands
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2
Unit 11 NAG1 NAG2
Unit 12 NAG1 NAG2
Unit 13 NAG301
Unit 14 NAG304
Unit 15 NAG305
Unit 16 NAG308
Unit 17 NAG309
Unit 18 NAG312
Unit 19 NAG313
Unit 20 NAG316

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany