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Sequence, Chains, Asymmetric and Biological Units

Title MYCOBACTERIUM DIAMINOPIMELATE DICARBOXYLASE (LYSA)
Keywords LYASE, DECARBOXYLASE, DIAMINOPIMELATE, DAPDC, PLP, LYSINE PA MYCBACTERIUM TUBERCULOSIS, LYSINE SYNTHETIC PATHWAY, PYRIDO PHOSPHATE, PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL CONSORTIUM, TB, TBSGC
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1HKV     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DIAMINOPIMELATE DECARBOXYLASE  A 446 3330 0
2  Protein   DIAMINOPIMELATE DECARBOXYLASE  B 446 3330 0
3  Protein   DIAMINOPIMELATE DECARBOXYLASE  A 2 0 25
4  Protein   DIAMINOPIMELATE DECARBOXYLASE  B 2 0 25
5 Water     236 0 236
total       1132 6660 286

Proteins
Unit 1 ASN2 GLU3 LEU4 LEU5 HIS6 LEU7 ALA8 PRO9 ASN10 VAL11 TRP12 PRO13 ARG14 ASN15 THR16 THR17 ARG18 ASP19 GLU20 VAL21 GLY22 VAL23 VAL24 CYS25 ILE26 ALA27 GLY28 ILE29 PRO30 LEU31 THR32 GLN33 LEU34 ALA35 GLN36 GLU37 TYR38 GLY39 THR40 PRO41 LEU42 PHE43 VAL44 ILE45 ASP46 GLU47 ASP48 ASP49 PHE50 ARG51 SER52 ARG53 CYS54 ARG55 GLU56 THR57 ALA58 ALA59 ALA60 PHE61 GLY62 SER63 GLY64 ALA65 ASN66 VAL67 HIS68 TYR69 ALA70 ALA71 LYS72 ALA73 PHE74 LEU75 CYS76 SER77 GLU78 VAL79 ALA80 ARG81 TRP82 ILE83 SER84 GLU85 GLU86 GLY87 LEU88 CYS89 LEU90 ASP91 VAL92 CYS93 THR94 GLY95 GLY96 GLU97 LEU98 ALA99 VAL100 ALA101 LEU102 HIS103 ALA104 SER105 PHE106 PRO107 PRO108 GLU109 ARG110 ILE111 THR112 LEU113 HIS114 GLY115 ASN116 ASN117 LYS118 SER119 VAL120 SER121 GLU122 LEU123 THR124 ALA125 ALA126 VAL127 LYS128 ALA129 GLY130 VAL131 GLY132 HIS133 ILE134 VAL135 VAL136 ASP137 SER138 MET139 THR140 GLU141 ILE142 GLU143 ARG144 LEU145 ASP146 ALA147 ILE148 ALA149 GLY150 GLU151 ALA152 GLY153 ILE154 VAL155 GLN156 ASP157 VAL158 LEU159 VAL160 ARG161 LEU162 THR163 VAL164 GLY165 VAL166 GLU167 ALA168 HIS169 THR170 HIS171 GLU172 PHE173 ILE174 SER175 THR176 ALA177 HIS178 GLU179 ASP180 GLN181 LYS182 PHE183 GLY184 LEU185 SER186 VAL187 ALA188 SER189 GLY190 ALA191 ALA192 MET193 ALA194 ALA195 VAL196 ARG197 ARG198 VAL199 PHE200 ALA201 THR202 ASP203 HIS204 LEU205 ARG206 LEU207 VAL208 GLY209 LEU210 HIS211 SER212 HIS213 ILE214 GLY215 SER216 GLN217 ILE218 PHE219 ASP220 VAL221 ASP222 GLY223 PHE224 GLU225 LEU226 ALA227 ALA228 HIS229 ARG230 VAL231 ILE232 GLY233 LEU234 LEU235 ARG236 ASP237 VAL238 VAL239 GLY240 GLU241 PHE242 GLY243 PRO244 GLU245 LYS246 THR247 ALA248 GLN249 ILE250 ALA251 THR252 VAL253 ASP254 LEU255 GLY256 GLY257 GLY258 LEU259 GLY260 ILE261 SER262 TYR263 LEU264 PRO265 SER266 ASP267 ASP268 PRO269 PRO270 PRO271 ILE272 ALA273 GLU274 LEU275 ALA276 ALA277 LYS278 LEU279 GLY280 THR281 ILE282 VAL283 SER284 ASP285 GLU286 SER287 THR288 ALA289 VAL290 GLY291 LEU292 PRO293 THR294 PRO295 LYS296 LEU297 VAL298 VAL299 GLU300 PRO301 GLY302 ARG303 ALA304 ILE305 ALA306 GLY307 PRO308 GLY309 THR310 ILE311 THR312 LEU313 TYR314 GLU315 VAL316 GLY317 THR318 VAL319 LYS320 ASP321 VAL322 ASP323 VAL324 SER325 ALA326 THR327 ALA328 HIS329 ARG330 ARG331 TYR332 VAL333 SER334 VAL335 ASP336 GLY337 GLY338 MET339 SER340 ASP341 ASN342 ILE343 ARG344 THR345 ALA346 LEU347 TYR348 GLY349 ALA350 GLN351 TYR352 ASP353 VAL354 ARG355 LEU356 VAL357 SER358 ARG359 VAL360 SER361 ASP362 ALA363 PRO364 PRO365 VAL366 PRO367 ALA368 ARG369 LEU370 VAL371 GLY372 LYS373 HIS374 CYS375 GLU376 SER377 GLY378 ASP379 ILE380 ILE381 VAL382 ARG383 ASP384 THR385 TRP386 VAL387 PRO388 ASP389 ASP390 ILE391 ARG392 PRO393 GLY394 ASP395 LEU396 VAL397 ALA398 VAL399 ALA400 ALA401 THR402 GLY403 ALA404 TYR405 CYS406 TYR407 SER408 LEU409 SER410 SER411 ARG412 TYR413 ASN414 MET415 VAL416 GLY417 ARG418 PRO419 ALA420 VAL421 VAL422 ALA423 VAL424 HIS425 ALA426 GLY427 ASN428 ALA429 ARG430 LEU431 VAL432 LEU433 ARG434 ARG435 GLU436 THR437 VAL438 ASP439 ASP440 LEU441 LEU442 SER443 LEU444 GLU445 VAL446 ARG447
Unit 2 ASN2 GLU3 LEU4 LEU5 HIS6 LEU7 ALA8 PRO9 ASN10 VAL11 TRP12 PRO13 ARG14 ASN15 THR16 THR17 ARG18 ASP19 GLU20 VAL21 GLY22 VAL23 VAL24 CYS25 ILE26 ALA27 GLY28 ILE29 PRO30 LEU31 THR32 GLN33 LEU34 ALA35 GLN36 GLU37 TYR38 GLY39 THR40 PRO41 LEU42 PHE43 VAL44 ILE45 ASP46 GLU47 ASP48 ASP49 PHE50 ARG51 SER52 ARG53 CYS54 ARG55 GLU56 THR57 ALA58 ALA59 ALA60 PHE61 GLY62 SER63 GLY64 ALA65 ASN66 VAL67 HIS68 TYR69 ALA70 ALA71 LYS72 ALA73 PHE74 LEU75 CYS76 SER77 GLU78 VAL79 ALA80 ARG81 TRP82 ILE83 SER84 GLU85 GLU86 GLY87 LEU88 CYS89 LEU90 ASP91 VAL92 CYS93 THR94 GLY95 GLY96 GLU97 LEU98 ALA99 VAL100 ALA101 LEU102 HIS103 ALA104 SER105 PHE106 PRO107 PRO108 GLU109 ARG110 ILE111 THR112 LEU113 HIS114 GLY115 ASN116 ASN117 LYS118 SER119 VAL120 SER121 GLU122 LEU123 THR124 ALA125 ALA126 VAL127 LYS128 ALA129 GLY130 VAL131 GLY132 HIS133 ILE134 VAL135 VAL136 ASP137 SER138 MET139 THR140 GLU141 ILE142 GLU143 ARG144 LEU145 ASP146 ALA147 ILE148 ALA149 GLY150 GLU151 ALA152 GLY153 ILE154 VAL155 GLN156 ASP157 VAL158 LEU159 VAL160 ARG161 LEU162 THR163 VAL164 GLY165 VAL166 GLU167 ALA168 HIS169 THR170 HIS171 GLU172 PHE173 ILE174 SER175 THR176 ALA177 HIS178 GLU179 ASP180 GLN181 LYS182 PHE183 GLY184 LEU185 SER186 VAL187 ALA188 SER189 GLY190 ALA191 ALA192 MET193 ALA194 ALA195 VAL196 ARG197 ARG198 VAL199 PHE200 ALA201 THR202 ASP203 HIS204 LEU205 ARG206 LEU207 VAL208 GLY209 LEU210 HIS211 SER212 HIS213 ILE214 GLY215 SER216 GLN217 ILE218 PHE219 ASP220 VAL221 ASP222 GLY223 PHE224 GLU225 LEU226 ALA227 ALA228 HIS229 ARG230 VAL231 ILE232 GLY233 LEU234 LEU235 ARG236 ASP237 VAL238 VAL239 GLY240 GLU241 PHE242 GLY243 PRO244 GLU245 LYS246 THR247 ALA248 GLN249 ILE250 ALA251 THR252 VAL253 ASP254 LEU255 GLY256 GLY257 GLY258 LEU259 GLY260 ILE261 SER262 TYR263 LEU264 PRO265 SER266 ASP267 ASP268 PRO269 PRO270 PRO271 ILE272 ALA273 GLU274 LEU275 ALA276 ALA277 LYS278 LEU279 GLY280 THR281 ILE282 VAL283 SER284 ASP285 GLU286 SER287 THR288 ALA289 VAL290 GLY291 LEU292 PRO293 THR294 PRO295 LYS296 LEU297 VAL298 VAL299 GLU300 PRO301 GLY302 ARG303 ALA304 ILE305 ALA306 GLY307 PRO308 GLY309 THR310 ILE311 THR312 LEU313 TYR314 GLU315 VAL316 GLY317 THR318 VAL319 LYS320 ASP321 VAL322 ASP323 VAL324 SER325 ALA326 THR327 ALA328 HIS329 ARG330 ARG331 TYR332 VAL333 SER334 VAL335 ASP336 GLY337 GLY338 MET339 SER340 ASP341 ASN342 ILE343 ARG344 THR345 ALA346 LEU347 TYR348 GLY349 ALA350 GLN351 TYR352 ASP353 VAL354 ARG355 LEU356 VAL357 SER358 ARG359 VAL360 SER361 ASP362 ALA363 PRO364 PRO365 VAL366 PRO367 ALA368 ARG369 LEU370 VAL371 GLY372 LYS373 HIS374 CYS375 GLU376 SER377 GLY378 ASP379 ILE380 ILE381 VAL382 ARG383 ASP384 THR385 TRP386 VAL387 PRO388 ASP389 ASP390 ILE391 ARG392 PRO393 GLY394 ASP395 LEU396 VAL397 ALA398 VAL399 ALA400 ALA401 THR402 GLY403 ALA404 TYR405 CYS406 TYR407 SER408 LEU409 SER410 SER411 ARG412 TYR413 ASN414 MET415 VAL416 GLY417 ARG418 PRO419 ALA420 VAL421 VAL422 ALA423 VAL424 HIS425 ALA426 GLY427 ASN428 ALA429 ARG430 LEU431 VAL432 LEU433 ARG434 ARG435 GLU436 THR437 VAL438 ASP439 ASP440 LEU441 LEU442 SER443 LEU444 GLU445 VAL446 ARG447
Unit 3 PLP500 LYS501
Unit 4 PLP500 LYS501

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany