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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
Keywords RIBOSOME, RIBOSOMAL RNA, TERTIARY STRUCTURE, RNA-PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIBOSOMAL PROTEIN L11  A 74 547 0
2  Protein   RIBOSOMAL PROTEIN L11  B 70 516 0
3  RNA    C 58 1220 32
4  RNA    D 58 1220 32
5  Ligand   58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN  C 13 0 13
6  Ligand   58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN  D 14 0 14
7 Water     11 0 13
total       298 3503 104

Proteins
Unit 1 THR2 PHE3 ILE4 THR5 LYS6 THR7 PRO8 PRO9 ALA10 ALA11 VAL12 LEU13 LEU14 LYS15 LYS16 ALA17 ALA18 GLY19 ILE20 GLU21 SER22 GLY23 SER24 GLY25 GLU26 PRO27 ASN28 ARG29 ASN30 LYS31 VAL32 ALA33 THR34 ILE35 LYS36 ARG37 ASP38 LYS39 VAL40 ARG41 GLU42 ILE43 ALA44 GLU45 LEU46 LYS47 MET48 PRO49 ASP50 LEU51 ASN52 ALA53 ALA54 SER55 ILE56 GLU57 ALA58 ALA59 MET60 ARG61 MET62 ILE63 GLU64 GLY65 THR66 ALA67 ARG68 SER69 MET70 GLY71 ILE72 VAL73 VAL74 GLU75
Unit 2 LYS206 THR207 PRO208 PRO209 ALA210 ALA211 VAL212 LEU213 LEU214 LYS215 LYS216 ALA217 ALA218 GLY219 ILE220 GLU221 SER222 GLY223 SER224 GLY225 GLU226 PRO227 ASN228 ARG229 ASN230 LYS231 VAL232 ALA233 THR234 ILE235 LYS236 ARG237 ASP238 LYS239 VAL240 ARG241 GLU242 ILE243 ALA244 GLU245 LEU246 LYS247 MET248 PRO249 ASP250 LEU251 ASN252 ALA253 ALA254 SER255 ILE256 GLU257 ALA258 ALA259 MET260 ARG261 MET262 ILE263 GLU264 GLY265 THR266 ALA267 ARG268 SER269 MET270 GLY271 ILE272 VAL273 VAL274 GLU275

Nucleic acids
Unit 3 GTP101 C102 C103 A104 G105 G106 A107 U108 G109 U110 A111 G112 G113 C114 U115 U116 A117 G118 A119 A120 G121 C122 A123 G124 C125 C126 A127 U128 C129 A130 U131 U132 U133 A134 A135 A136 G137 A138 A139 A140 G141 C142 G143 U144 A145 A146 U147 A148 G149 C150 U151 C152 A153 C154 U155 G156 G157 U158
Unit 4 GTP301 C302 C303 A304 G305 G306 A307 U308 G309 U310 A311 G312 G313 C314 U315 U316 A317 G318 A319 A320 G321 C322 A323 G324 C325 C326 A327 U328 C329 A330 U331 U332 U333 A334 A335 A336 G337 A338 A339 A340 G341 C342 G343 U344 A345 A346 U347 A348 G349 C350 U351 C352 A353 C354 U355 G356 G357 U358

Ligands
Unit 5 MG1159 MG1160 MG1161 K1162 MG1163 MG1164 MG1165 MG1166 MG1167 MG1168 OS1169 OS1170 MG1172
Unit 6 MG1359 MG1360 MG1361 K1362 MG1363 MG1364 MG1365 MG1366 MG1367 MG1368 MG1369 OS1370 OS1371 MG1372

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany