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Sequence, Chains, Asymmetric and Biological Units

Title TYROSYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED TYPE TRNATYR(GUA) AND WITH ATP AND TYROSINOL
Keywords LIGASE, CLASS I AMINOACYL-TRNA SYNTHETASE: ATP + L-TYROSINE TRNA(TYR) -> AMP + PPI + L-TYROSYL-TRNA(TYR)
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1H3E     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TYROSYL-TRNA SYNTHETASE  A 427 3403 0
2  DNA/RNA    B 84 1678 84
3  Ligand   TYROSYL-TRNA SYNTHETASE  A 2 0 43
4 Water     13 0 13
total       526 5081 140

Proteins
Unit 1 HIS6 THR7 PRO8 GLU9 GLU10 ALA11 LEU12 ALA13 LEU14 LEU15 LYS16 ARG17 GLY18 ALA19 GLU20 GLU21 ILE22 VAL23 PRO24 GLU25 GLU26 GLU27 LEU28 LEU29 ALA30 LYS31 LEU32 LYS33 GLU34 GLY35 ARG36 PRO37 LEU38 THR39 VAL40 LYS41 LEU42 GLY43 ALA44 ASP45 PRO46 THR47 ARG48 PRO49 ASP50 LEU51 HIS52 LEU53 GLY54 HIS55 ALA56 VAL57 VAL58 LEU59 ARG60 LYS61 MET62 ARG63 GLN64 PHE65 GLN66 GLU67 LEU68 GLY69 HIS70 LYS71 VAL72 VAL73 LEU74 ILE75 ILE76 GLY77 ASP78 PHE79 THR80 GLY81 MET82 ILE83 GLY84 ASP85 PRO86 SER87 GLY88 ARG89 SER90 LYS91 THR92 ARG93 PRO94 PRO95 LEU96 THR97 LEU98 GLU99 GLU100 THR101 ARG102 GLU103 ASN104 ALA105 LYS106 THR107 TYR108 VAL109 ALA110 GLN111 ALA112 GLY113 LYS114 ILE115 LEU116 ARG117 GLN118 GLU119 PRO120 HIS121 LEU122 PHE123 GLU124 LEU125 ARG126 TYR127 ASN128 SER129 GLU130 TRP131 LEU132 GLU133 GLY134 LEU135 THR136 PHE137 LYS138 GLU139 VAL140 VAL141 ARG142 LEU143 THR144 SER145 LEU146 MET147 THR148 VAL149 ALA150 GLN151 MET152 LEU153 GLU154 ARG155 GLU156 ASP157 PHE158 LYS159 LYS160 ARG161 TYR162 GLU163 ALA164 GLY165 ILE166 PRO167 ILE168 SER169 LEU170 HIS171 GLU172 LEU173 LEU174 TYR175 PRO176 PHE177 ALA178 GLN179 ALA180 TYR181 ASP182 SER183 VAL184 ALA185 ILE186 ARG187 ALA188 ASP189 VAL190 GLU191 MET192 GLY193 GLY194 THR195 ASP196 GLN197 ARG198 PHE199 ASN200 LEU201 LEU202 VAL203 GLY204 ARG205 GLU206 VAL207 GLN208 ARG209 ALA210 TYR211 GLY212 GLN213 SER214 PRO215 GLN216 VAL217 CYS218 PHE219 LEU220 MET221 PRO222 LEU223 LEU224 VAL225 GLY226 LEU227 ASP228 GLY229 ARG230 GLU231 LYS232 MET233 SER234 LYS235 SER236 LEU237 ASP238 ASN239 TYR240 ILE241 GLY242 LEU243 THR244 GLU245 PRO246 PRO247 GLU248 ALA249 MET250 PHE251 LYS252 LYS253 LEU254 MET255 ARG256 VAL257 PRO258 ASP259 PRO260 LEU261 LEU262 PRO263 SER264 TYR265 PHE266 ARG267 LEU268 LEU269 THR270 ASP271 LEU272 GLU273 GLU274 GLU275 GLU276 ILE277 GLU278 ALA279 LEU280 LEU281 LYS282 ALA283 GLY284 PRO285 VAL286 PRO287 ALA288 HIS289 ARG290 VAL291 LEU292 ALA293 ARG294 LEU295 LEU296 THR297 ALA298 ALA299 TYR300 ALA301 LEU302 PRO303 GLN304 ILE305 PRO306 PRO307 ARG308 ILE309 ASP310 ARG311 ALA312 PHE313 TYR314 GLU315 SER316 LEU317 GLY318 TYR319 ALA320 TRP321 GLU322 ALA323 PHE324 GLY325 ARG326 ASP327 LYS328 GLU329 ALA330 GLY331 PRO332 GLU333 GLU334 VAL335 ARG336 ARG337 ALA338 GLU339 ALA340 ARG341 TYR342 ASP343 GLU344 VAL345 ALA346 LYS347 GLY348 GLY349 ILE350 PRO351 GLU352 GLU353 ILE354 PRO355 GLU356 VAL357 THR358 ILE359 PRO360 ALA361 SER362 GLU363 LEU364 LYS365 GLU366 GLY367 ARG368 ILE369 TRP370 VAL371 ALA372 ARG373 LEU374 PHE375 THR376 LEU377 ALA378 GLY379 LEU380 THR381 PRO382 SER383 ASN384 ALA385 GLU386 ALA387 ARG388 ARG389 LEU390 ILE391 GLN392 ASN393 ARG394 GLY395 LEU396 ARG397 LEU398 ASP399 GLY400 GLU401 VAL402 LEU403 THR404 ASP405 PRO406 MET407 LEU408 GLN409 VAL410 ASP411 LEU412 SER413 ARG414 PRO415 ARG416 ILE417 LEU418 GLN419 ARG420 GLY421 LYS422 ASP423 ARG424 PHE425 VAL426 ARG427 VAL428 ARG429 LEU430 SER431 ASP432

Nucleic acids
Unit 2 G1 G2 G3 C4 A5 G6 G7 U8 U9 C10 C11 C12 G13 A14 G15 C16 G18 G19 C20 C20A A20B A21 A22 G23 G24 G25 G26 A27 C28 G29 G30 U31 C32 U33 G34 PSU35 A36 A37 A38 A39 C40 C41 G42 U43 U44 G45 G46 C47 G47A U47B A47C U47D G47E C47F C47G U47H U47I C48 G49 C50 U51 G52 G53 5MU54 PSU55 C56 G57 1MA58 A59 U60 C61 C62 A63 G64 C65 C66 C67 U68 G69 C70 C71 C72 A73 C74

Ligands
Unit 3 ATP1433 TYE1434

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany