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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HYDROXYNITRILE LYASE FROM SORGHUM BICOL COMPLEX WITH INHIBITOR BENZOIC ACID: A NOVEL CYANOGENIC ENZ
Keywords LYASE, INHIBITOR COMPLEX, CYANOGENESIS MECHANISM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1GXS     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A  A 267 2120 0
2  Protein   P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B  B 158 1254 0
3  Protein   P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A  C 267 2120 0
4  Protein   P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B  D 158 1254 0
5  Ligand    E 3 0 38
6  Ligand    F 3 0 38
7  Ligand   P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A  A 2 0 21
8  Ligand   P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B  B 1 0 14
9  Ligand   P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN A  C 2 0 21
10  Ligand   P-(S)-HYDROXYMANDELONITRILE LYASE CHAIN B  D 1 0 14
11 Water     331 0 331
total       1193 6748 477
Proteins
Unit 1 GLN4 GLN5 GLU6 ASP7 ASP8 ARG9 ILE10 LEU11 GLY12 LEU13 PRO14 GLY15 GLN16 PRO17 ASN18 GLY19 VAL20 ALA21 PHE22 GLY23 MET24 TYR25 GLY26 GLY27 TYR28 VAL29 THR30 ILE31 ASP32 ASP33 ASN34 ASN35 GLY36 ARG37 ALA38 LEU39 TYR40 TYR41 TRP42 PHE43 GLN44 GLU45 ALA46 ASP47 THR48 ALA49 ASP50 PRO51 ALA52 ALA53 ALA54 PRO55 LEU56 VAL57 LEU58 TRP59 LEU60 ASN61 GLY62 GLY63 PRO64 GLY65 CYS66 SER67 SER68 ILE69 GLY70 LEU71 GLY72 ALA73 MET74 GLN75 GLU76 LEU77 GLY78 ALA79 PHE80 ARG81 VAL82 HIS83 THR84 ASN85 GLY86 GLU87 SER88 LEU89 LEU90 LEU91 ASN92 GLU93 TYR94 ALA95 TRP96 ASN97 LYS98 ALA99 ALA100 ASN101 ILE102 LEU103 PHE104 ALA105 GLU106 SER107 PRO108 ALA109 GLY110 VAL111 GLY112 PHE113 SER114 TYR115 SER116 ASN117 THR118 SER119 SER120 ASP121 LEU122 SER123 MET124 GLY125 ASP126 ASP127 LYS128 MET129 ALA130 GLN131 ASP132 THR133 TYR134 THR135 PHE136 LEU137 VAL138 LYS139 TRP140 PHE141 GLU142 ARG143 PHE144 PRO145 HIS146 TYR147 ASN148 TYR149 ARG150 GLU151 PHE152 TYR153 ILE154 ALA155 GLY156 GLU157 SER158 GLY159 HIS160 PHE161 ILE162 PRO163 GLN164 LEU165 SER166 GLN167 VAL168 VAL169 TYR170 ARG171 ASN172 ARG173 ASN174 ASN175 SER176 PRO177 PHE178 ILE179 ASN180 PHE181 GLN182 GLY183 LEU184 LEU185 VAL186 SER187 SER188 GLY189 LEU190 THR191 ASN192 ASP193 HIS194 GLU195 ASP196 MET197 ILE198 GLY199 MET200 PHE201 GLU202 SER203 TRP204 TRP205 HIS206 HIS207 GLY208 LEU209 ILE210 SER211 ASP212 GLU213 THR214 ARG215 ASP216 SER217 GLY218 LEU219 LYS220 VAL221 CYS222 PRO223 GLY224 THR225 SER226 PHE227 MET228 HIS229 PRO230 THR231 PRO232 GLU233 CYS234 THR235 GLU236 VAL237 TRP238 ASN239 LYS240 ALA241 LEU242 ALA243 GLU244 GLN245 GLY246 ASN247 ILE248 ASN249 PRO250 TYR251 THR252 ILE253 TYR254 THR255 PRO256 THR257 CYS258 ASP259 ARG260 GLU261 PRO262 SER263 PRO264 TYR265 GLN266 ARG267 ARG268 PHE269 TRP270
Unit 2 LEU283 PRO284 PRO285 TYR286 ASP287 PRO288 CYS289 ALA290 VAL291 PHE292 ASN293 SER294 ILE295 ASN296 TYR297 LEU298 ASN299 LEU300 PRO301 GLU302 VAL303 GLN304 THR305 ALA306 LEU307 HIS308 ALA309 ASN310 VAL311 SER312 GLY313 ILE314 VAL315 GLU316 TYR317 PRO318 TRP319 THR320 VAL321 CYS322 SER323 ASN324 THR325 ILE326 PHE327 ASP328 GLN329 TRP330 GLY331 GLN332 ALA333 ALA334 ASP335 ASP336 LEU337 LEU338 PRO339 VAL340 TYR341 ARG342 GLU343 LEU344 ILE345 GLN346 ALA347 GLY348 LEU349 ARG350 VAL351 TRP352 VAL353 TYR354 SER355 GLY356 ASP357 THR358 ASP359 SER360 VAL361 VAL362 PRO363 VAL364 SER365 SER366 THR367 ARG368 ARG369 SER370 LEU371 ALA372 ALA373 LEU374 GLU375 LEU376 PRO377 VAL378 LYS379 THR380 SER381 TRP382 TYR383 PRO384 TRP385 TYR386 MET387 ALA388 PRO389 THR390 GLU391 ARG392 GLU393 VAL394 GLY395 GLY396 TRP397 SER398 VAL399 GLN400 TYR401 GLU402 GLY403 LEU404 THR405 TYR406 VAL407 THR408 VAL409 ARG410 GLY411 ALA412 GLY413 HIS414 LEU415 VAL416 PRO417 VAL418 HIS419 ARG420 PRO421 ALA422 GLN423 ALA424 PHE425 LEU426 LEU427 PHE428 LYS429 GLN430 PHE431 LEU432 LYS433 GLY434 GLU435 PRO436 MET437 PRO438 ALA439 GLU440
Unit 3 GLN4 GLN5 GLU6 ASP7 ASP8 ARG9 ILE10 LEU11 GLY12 LEU13 PRO14 GLY15 GLN16 PRO17 ASN18 GLY19 VAL20 ALA21 PHE22 GLY23 MET24 TYR25 GLY26 GLY27 TYR28 VAL29 THR30 ILE31 ASP32 ASP33 ASN34 ASN35 GLY36 ARG37 ALA38 LEU39 TYR40 TYR41 TRP42 PHE43 GLN44 GLU45 ALA46 ASP47 THR48 ALA49 ASP50 PRO51 ALA52 ALA53 ALA54 PRO55 LEU56 VAL57 LEU58 TRP59 LEU60 ASN61 GLY62 GLY63 PRO64 GLY65 CYS66 SER67 SER68 ILE69 GLY70 LEU71 GLY72 ALA73 MET74 GLN75 GLU76 LEU77 GLY78 ALA79 PHE80 ARG81 VAL82 HIS83 THR84 ASN85 GLY86 GLU87 SER88 LEU89 LEU90 LEU91 ASN92 GLU93 TYR94 ALA95 TRP96 ASN97 LYS98 ALA99 ALA100 ASN101 ILE102 LEU103 PHE104 ALA105 GLU106 SER107 PRO108 ALA109 GLY110 VAL111 GLY112 PHE113 SER114 TYR115 SER116 ASN117 THR118 SER119 SER120 ASP121 LEU122 SER123 MET124 GLY125 ASP126 ASP127 LYS128 MET129 ALA130 GLN131 ASP132 THR133 TYR134 THR135 PHE136 LEU137 VAL138 LYS139 TRP140 PHE141 GLU142 ARG143 PHE144 PRO145 HIS146 TYR147 ASN148 TYR149 ARG150 GLU151 PHE152 TYR153 ILE154 ALA155 GLY156 GLU157 SER158 GLY159 HIS160 PHE161 ILE162 PRO163 GLN164 LEU165 SER166 GLN167 VAL168 VAL169 TYR170 ARG171 ASN172 ARG173 ASN174 ASN175 SER176 PRO177 PHE178 ILE179 ASN180 PHE181 GLN182 GLY183 LEU184 LEU185 VAL186 SER187 SER188 GLY189 LEU190 THR191 ASN192 ASP193 HIS194 GLU195 ASP196 MET197 ILE198 GLY199 MET200 PHE201 GLU202 SER203 TRP204 TRP205 HIS206 HIS207 GLY208 LEU209 ILE210 SER211 ASP212 GLU213 THR214 ARG215 ASP216 SER217 GLY218 LEU219 LYS220 VAL221 CYS222 PRO223 GLY224 THR225 SER226 PHE227 MET228 HIS229 PRO230 THR231 PRO232 GLU233 CYS234 THR235 GLU236 VAL237 TRP238 ASN239 LYS240 ALA241 LEU242 ALA243 GLU244 GLN245 GLY246 ASN247 ILE248 ASN249 PRO250 TYR251 THR252 ILE253 TYR254 THR255 PRO256 THR257 CYS258 ASP259 ARG260 GLU261 PRO262 SER263 PRO264 TYR265 GLN266 ARG267 ARG268 PHE269 TRP270
Unit 4 LEU283 PRO284 PRO285 TYR286 ASP287 PRO288 CYS289 ALA290 VAL291 PHE292 ASN293 SER294 ILE295 ASN296 TYR297 LEU298 ASN299 LEU300 PRO301 GLU302 VAL303 GLN304 THR305 ALA306 LEU307 HIS308 ALA309 ASN310 VAL311 SER312 GLY313 ILE314 VAL315 GLU316 TYR317 PRO318 TRP319 THR320 VAL321 CYS322 SER323 ASN324 THR325 ILE326 PHE327 ASP328 GLN329 TRP330 GLY331 GLN332 ALA333 ALA334 ASP335 ASP336 LEU337 LEU338 PRO339 VAL340 TYR341 ARG342 GLU343 LEU344 ILE345 GLN346 ALA347 GLY348 LEU349 ARG350 VAL351 TRP352 VAL353 TYR354 SER355 GLY356 ASP357 THR358 ASP359 SER360 VAL361 VAL362 PRO363 VAL364 SER365 SER366 THR367 ARG368 ARG369 SER370 LEU371 ALA372 ALA373 LEU374 GLU375 LEU376 PRO377 VAL378 LYS379 THR380 SER381 TRP382 TYR383 PRO384 TRP385 TYR386 MET387 ALA388 PRO389 THR390 GLU391 ARG392 GLU393 VAL394 GLY395 GLY396 TRP397 SER398 VAL399 GLN400 TYR401 GLU402 GLY403 LEU404 THR405 TYR406 VAL407 THR408 VAL409 ARG410 GLY411 ALA412 GLY413 HIS414 LEU415 VAL416 PRO417 VAL418 HIS419 ARG420 PRO421 ALA422 GLN423 ALA424 PHE425 LEU426 LEU427 PHE428 LYS429 GLN430 PHE431 LEU432 LYS433 GLY434 GLU435 PRO436 MET437 PRO438 ALA439 GLU440
Ligands
Unit 5 NAG1 FUL2 NAG3
Unit 6 NAG1 FUL2 NAG3
Unit 7 BEZ601 DKA701
Unit 8 NAG1310
Unit 9 BEZ602 DKA702
Unit 10 NAG1310
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany