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Sequence, Chains, Asymmetric and Biological Units

Title ELECTROSTATIC POTENTIAL DISTRIBUTION OF THE GENE V PROTEIN FROM FF PHAGE FACILITATES COOPERATIVE DNA BINDING: A MODEL OF THE GVP-SSDNA COMPLEX
Keywords COMPLEX (DNA-BINDING PROTEIN/DNA)
Experiment theoretical model
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1GPV     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA    C 4 84 0
2  DNA    D 4 84 0
3  Protein   GENE V PROTEIN  A 87 837 0
4  Protein   GENE V PROTEIN  B 87 837 0
total       182 1842 0

Proteins
Unit 3 MET1 ILE2 LYS3 VAL4 GLU5 ILE6 LYS7 PRO8 SER9 GLN10 ALA11 GLN12 PHE13 THR14 THR15 ARG16 SER17 GLY18 VAL19 SER20 ARG21 GLN22 GLY23 LYS24 PRO25 TYR26 SER27 LEU28 ASN29 GLU30 GLN31 LEU32 CYS33 TYR34 VAL35 ASP36 LEU37 GLY38 ASN39 GLU40 TYR41 PRO42 VAL43 LEU44 VAL45 LYS46 ILE47 THR48 LEU49 ASP50 GLU51 GLY52 GLN53 PRO54 ALA55 TYR56 ALA57 PRO58 GLY59 LEU60 TYR61 THR62 VAL63 HIS64 LEU65 SER66 SER67 PHE68 LYS69 VAL70 GLY71 GLN72 PHE73 GLY74 SER75 LEU76 MET77 ILE78 ASP79 ARG80 LEU81 ARG82 LEU83 VAL84 PRO85 ALA86 LYS87
Unit 4 MET1 ILE2 LYS3 VAL4 GLU5 ILE6 LYS7 PRO8 SER9 GLN10 ALA11 GLN12 PHE13 THR14 THR15 ARG16 SER17 GLY18 VAL19 SER20 ARG21 GLN22 GLY23 LYS24 PRO25 TYR26 SER27 LEU28 ASN29 GLU30 GLN31 LEU32 CYS33 TYR34 VAL35 ASP36 LEU37 GLY38 ASN39 GLU40 TYR41 PRO42 VAL43 LEU44 VAL45 LYS46 ILE47 THR48 LEU49 ASP50 GLU51 GLY52 GLN53 PRO54 ALA55 TYR56 ALA57 PRO58 GLY59 LEU60 TYR61 THR62 VAL63 HIS64 LEU65 SER66 SER67 PHE68 LYS69 VAL70 GLY71 GLN72 PHE73 GLY74 SER75 LEU76 MET77 ILE78 ASP79 ARG80 LEU81 ARG82 LEU83 VAL84 PRO85 ALA86 LYS87

Nucleic acids
Unit 1 A1 A2 A3 A4
Unit 2 A1 A2 A3 A4

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany