1GPO - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE RATIONALLY DESIGNED ANTIBODY M41 AS FRAGMENT
• Keywords: PROTEIN ENGINEERING, ANTIBODY DESIGN, IMMUNOGLOBULIN STRUCTU ANTIGEN-BINDING SITE, CANONICAL CONFORMATION, COMPLEMENTARI DETERMINING REGION, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1GPO	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ANTIBODY M41	L	216	1676	0
2	Protein	ANTIBODY M41	H	214	1636	0
3	Protein	ANTIBODY M41	M	218	1693	0
4	Protein	ANTIBODY M41	I	212	1617	0
5	Ligand	ANTIBODY M41	H	1	0	5
6	Ligand	ANTIBODY M41	I	1	0	5
7	Water			649	0	649
total				1511	6622	659

Proteins

Unit 1	ASP 1 ILE 2 GLU 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 THR 10 LEU 11 SER 12 VAL 13 THR 14 PRO 15 GLY 16 ASN 17 SER 18 VAL 19 SER 20 ILE 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 LEU 29 VAL 30 ASN 31 GLU 32 ASP 33 GLY 34 ASN 35 THR 36 TYR 37 LEU 38 PHE 39 TRP 40 TYR 41 GLN 42 GLN 43 LYS 44 SER 45 HIS 46 GLU 47 SER 48 PRO 49 ARG 50 LEU 51 LEU 52 ILE 53 LYS 54 TYR 55 ALA 56 SER 57 GLN 58 SER 59 ILE 60 SER 61 GLY 62 ILE 63 PRO 64 SER 65 ARG 66 PHE 67 SER 68 GLY 69 SER 70 GLY 71 SER 72 GLY 73 THR 74 ASP 75 PHE 76 THR 77 LEU 78 SER 79 ILE 80 ASN 81 SER 82 VAL 83 GLU 84 THR 85 GLU 86 ASP 87 LEU 88 ALA 89 VAL 90 TYR 91 PHE 92 CYS 93 GLN 94 GLN 95 ILE 96 THR 97 ASP 98 TRP 99 PRO 100 PHE 101 THR 102 PHE 103 GLY 104 GLY 105 GLY 106 THR 107 LYS 108 LEU 109 GLU 110 ILE 111 LYS 112 ARG 113 ALA 114 ASP 115 ALA 116 ALA 117 PRO 118 THR 119 VAL 120 SER 121 ILE 122 PHE 123 PRO 124 PRO 125 SER 126 SER 127 GLU 128 GLN 129 LEU 130 THR 131 SER 132 GLY 133 GLY 134 ALA 135 SER 136 VAL 137 VAL 138 CYS 139 PHE 140 LEU 141 ASN 142 ASN 143 PHE 144 TYR 145 PRO 146 LYS 147 ASP 148 ILE 149 ASN 150 VAL 151 LYS 152 TRP 153 LYS 154 ILE 155 ASP 156 GLY 157 SER 158 GLU 159 ARG 160 GLN 161 ASN 162 GLY 163 VAL 164 LEU 165 ASN 166 SER 167 TRP 168 THR 169 ASP 170 GLN 171 ASP 172 SER 173 LYS 174 ASP 175 SER 176 THR 177 TYR 178 SER 179 MET 180 SER 181 SER 182 THR 183 LEU 184 THR 185 LEU 186 THR 187 LYS 188 ASP 189 GLU 190 TYR 191 GLU 192 ARG 193 HIS 194 ASN 195 SER 196 TYR 197 THR 198 CYS 199 GLU 200 ALA 201 THR 202 HIS 203 LYS 204 THR 205 SER 206 THR 207 SER 208 PRO 209 ILE 210 VAL 211 LYS 212 SER 213 PHE 214 ASN 215 ARG 216
Unit 2	GLU 1 VAL 2 LYS 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 PRO 9 SER 10 LEU 11 VAL 12 LYS 13 PRO 14 SER 15 GLN 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 SER 23 VAL 24 THR 25 GLY 26 ASP 27 SER 28 ILE 29 THR 30 SER 31 ASP 32 PHE 33 TRP 34 SER 35 TRP 36 ILE 37 ARG 38 GLN 39 PHE 40 PRO 41 GLY 42 ASN 43 ARG 44 LEU 45 GLU 46 TYR 47 MET 48 GLY 49 PHE 50 VAL 51 GLN 52 TYR 53 SER 54 GLY 55 GLU 56 THR 57 ALA 58 TYR 59 ASN 60 PRO 61 SER 62 LEU 63 LYS 64 SER 65 ARG 66 ILE 67 SER 68 ILE 69 THR 70 ARG 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 GLN 77 TYR 78 TYR 79 LEU 80 ASP 81 LEU 82 ASN 83 SER 84 VAL 85 THR 86 THR 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ALA 96 ASN 97 TRP 98 HIS 99 GLY 100 ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 LYS 115 THR 116 THR 117 PRO 118 PRO 119 SER 120 VAL 121 TYR 122 PRO 123 LEU 124 ALA 125 PRO 126 GLY 127 SER 128 ALA 129 ALA 130 GLN 131 THR 132 ASN 133 SER 134 MET 135 VAL 136 THR 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 GLY 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 THR 153 TRP 154 ASN 155 SER 156 GLY 157 SER 158 LEU 159 SER 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 ASP 173 LEU 174 TYR 175 THR 176 LEU 177 SER 178 SER 179 SER 180 VAL 181 THR 182 VAL 183 PRO 184 SER 185 SER 186 THR 187 TRP 188 PRO 189 SER 190 GLU 191 THR 192 VAL 193 THR 194 CYS 195 ASN 196 VAL 197 ALA 198 HIS 199 PRO 200 ALA 201 SER 202 SER 203 THR 204 LYS 205 VAL 206 ASP 207 LYS 208 LYS 209 ILE 210 VAL 211 PRO 212 ARG 213 ASP 214
Unit 3	ASP 1 ILE 2 GLU 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 THR 10 LEU 11 SER 12 VAL 13 THR 14 PRO 15 GLY 16 ASN 17 SER 18 VAL 19 SER 20 ILE 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 LEU 29 VAL 30 ASN 31 GLU 32 ASP 33 GLY 34 ASN 35 THR 36 TYR 37 LEU 38 PHE 39 TRP 40 TYR 41 GLN 42 GLN 43 LYS 44 SER 45 HIS 46 GLU 47 SER 48 PRO 49 ARG 50 LEU 51 LEU 52 ILE 53 LYS 54 TYR 55 ALA 56 SER 57 GLN 58 SER 59 ILE 60 SER 61 GLY 62 ILE 63 PRO 64 SER 65 ARG 66 PHE 67 SER 68 GLY 69 SER 70 GLY 71 SER 72 GLY 73 THR 74 ASP 75 PHE 76 THR 77 LEU 78 SER 79 ILE 80 ASN 81 SER 82 VAL 83 GLU 84 THR 85 GLU 86 ASP 87 LEU 88 ALA 89 VAL 90 TYR 91 PHE 92 CYS 93 GLN 94 GLN 95 ILE 96 THR 97 ASP 98 TRP 99 PRO 100 PHE 101 THR 102 PHE 103 GLY 104 GLY 105 GLY 106 THR 107 LYS 108 LEU 109 GLU 110 ILE 111 LYS 112 ARG 113 ALA 114 ASP 115 ALA 116 ALA 117 PRO 118 THR 119 VAL 120 SER 121 ILE 122 PHE 123 PRO 124 PRO 125 SER 126 SER 127 GLU 128 GLN 129 LEU 130 THR 131 SER 132 GLY 133 GLY 134 ALA 135 SER 136 VAL 137 VAL 138 CYS 139 PHE 140 LEU 141 ASN 142 ASN 143 PHE 144 TYR 145 PRO 146 LYS 147 ASP 148 ILE 149 ASN 150 VAL 151 LYS 152 TRP 153 LYS 154 ILE 155 ASP 156 GLY 157 SER 158 GLU 159 ARG 160 GLN 161 ASN 162 GLY 163 VAL 164 LEU 165 ASN 166 SER 167 TRP 168 THR 169 ASP 170 GLN 171 ASP 172 SER 173 LYS 174 ASP 175 SER 176 THR 177 TYR 178 SER 179 MET 180 SER 181 SER 182 THR 183 LEU 184 THR 185 LEU 186 THR 187 LYS 188 ASP 189 GLU 190 TYR 191 GLU 192 ARG 193 HIS 194 ASN 195 SER 196 TYR 197 THR 198 CYS 199 GLU 200 ALA 201 THR 202 HIS 203 LYS 204 THR 205 SER 206 THR 207 SER 208 PRO 209 ILE 210 VAL 211 LYS 212 SER 213 PHE 214 ASN 215 ARG 216 ASN 217 GLU 218
Unit 4	GLU 1 VAL 2 LYS 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 PRO 9 SER 10 LEU 11 VAL 12 LYS 13 PRO 14 SER 15 GLN 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 SER 23 VAL 24 THR 25 GLY 26 ASP 27 SER 28 ILE 29 THR 30 SER 31 ASP 32 PHE 33 TRP 34 SER 35 TRP 36 ILE 37 ARG 38 GLN 39 PHE 40 PRO 41 GLY 42 ASN 43 ARG 44 LEU 45 GLU 46 TYR 47 MET 48 GLY 49 PHE 50 VAL 51 GLN 52 TYR 53 SER 54 GLY 55 GLU 56 THR 57 ALA 58 TYR 59 ASN 60 PRO 61 SER 62 LEU 63 LYS 64 SER 65 ARG 66 ILE 67 SER 68 ILE 69 THR 70 ARG 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 GLN 77 TYR 78 TYR 79 LEU 80 ASP 81 LEU 82 ASN 83 SER 84 VAL 85 THR 86 THR 87 GLU 88 ASP 89 THR 90 ALA 91 VAL 92 TYR 93 TYR 94 CYS 95 ALA 96 ASN 97 TRP 98 HIS 99 GLY 100 ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 LYS 115 THR 116 THR 117 PRO 118 PRO 119 SER 120 VAL 121 TYR 122 PRO 123 LEU 124 ALA 125 PRO 126 GLY 127 SER 128 ALA 129 ALA 130 GLN 131 THR 132 ASN 133 SER 134 MET 135 VAL 136 THR 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 GLY 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 THR 153 TRP 154 ASN 155 SER 156 GLY 157 SER 158 LEU 159 SER 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 ASP 173 LEU 174 TYR 175 THR 176 LEU 177 SER 178 SER 179 SER 180 VAL 181 THR 182 VAL 183 PRO 184 SER 185 SER 186 THR 187 TRP 188 PRO 189 SER 190 GLU 191 THR 192 VAL 193 THR 194 CYS 195 ASN 196 VAL 197 ALA 198 HIS 199 PRO 200 ALA 201 SER 202 SER 203 THR 204 LYS 205 VAL 206 ASP 207 LYS 208 LYS 209 ILE 210 VAL 211 PRO 212

Ligands

Unit 5	SO4 650
Unit 6	SO4 651