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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURES OF NK1-HEPARIN COMPLEXES REVEAL THE BASIS ACTIVITY AND ENABLE ENGINEERING OF POTENT AGONISTS OF THE M RECEPTOR
Keywords HORMONE, GROWTH FACTOR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1GMO     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEPATOCYTE GROWTH FACTOR  A 173 1324 0
2  Protein   HEPATOCYTE GROWTH FACTOR  B 173 1339 0
3  Protein   HEPATOCYTE GROWTH FACTOR  C 173 1341 0
4  Protein   HEPATOCYTE GROWTH FACTOR  D 173 1305 0
5  Protein   HEPATOCYTE GROWTH FACTOR  E 174 1297 0
6  Protein   HEPATOCYTE GROWTH FACTOR  F 174 1331 0
7  Protein   HEPATOCYTE GROWTH FACTOR  G 165 1241 0
8  Protein   HEPATOCYTE GROWTH FACTOR  H 172 1299 0
9  Ligand    I 6 0 105
10  Ligand    J 7 0 121
11  Ligand    K 8 0 140
12  Ligand    L 9 0 159
13  Ligand    M 6 0 105
14  Ligand    N 6 0 105
15  Ligand   HEPATOCYTE GROWTH FACTOR  A 2 0 20
16  Ligand   HEPATOCYTE GROWTH FACTOR  B 2 0 20
17  Ligand   HEPATOCYTE GROWTH FACTOR  C 2 0 20
18  Ligand   HEPATOCYTE GROWTH FACTOR  D 2 0 20
19  Ligand   HEPATOCYTE GROWTH FACTOR  E 2 0 20
20  Ligand   HEPATOCYTE GROWTH FACTOR  F 3 0 25
21  Ligand   HEPATOCYTE GROWTH FACTOR  G 1 0 15
22  Ligand   HEPATOCYTE GROWTH FACTOR  H 2 0 20
23 Water     183 0 183
total       1618 10477 1078
Proteins
Unit 1 ASN37 THR38 ILE39 HIS40 GLU41 PHE42 LYS43 LYS44 SER45 ALA46 LYS47 THR48 THR49 LEU50 ILE51 LYS52 ILE53 ASP54 PRO55 ALA56 LEU57 LYS58 ILE59 LYS60 THR61 LYS62 LYS63 VAL64 ASN65 THR66 ALA67 ASP68 GLN69 CYS70 ALA71 ASP72 ARG73 CYS74 THR75 ARG76 ASN77 LYS78 GLY79 LEU80 PRO81 PHE82 THR83 CYS84 LYS85 ALA86 PHE87 VAL88 PHE89 ASP90 LYS91 ALA92 ARG93 LYS94 GLN95 CYS96 LEU97 TRP98 PHE99 PRO100 PHE101 ASN102 SER103 MET104 SER105 SER106 GLY107 VAL108 LYS109 LYS110 GLU111 PHE112 GLY113 HIS114 GLU115 PHE116 ASP117 LEU118 TYR119 GLU120 ASN121 LYS122 ASP123 TYR124 ILE125 ARG126 ASN127 CYS128 ILE129 ILE130 GLY131 LYS132 GLY133 ARG134 SER135 TYR136 LYS137 GLY138 THR139 VAL140 SER141 ILE142 THR143 LYS144 SER145 GLY146 ILE147 LYS148 CYS149 GLN150 PRO151 TRP152 SER153 SER154 MET155 ILE156 PRO157 HIS158 GLU159 HIS160 SER161 PHE162 LEU163 PRO164 SER165 SER166 TYR167 ARG168 GLY169 LYS170 ASP171 LEU172 GLN173 GLU174 ASN175 TYR176 CYS177 ARG178 ASN179 PRO180 ARG181 GLY182 GLU183 GLU184 GLY185 GLY186 PRO187 TRP188 CYS189 PHE190 THR191 SER192 ASN193 PRO194 GLU195 VAL196 ARG197 TYR198 GLU199 VAL200 CYS201 ASP202 ILE203 PRO204 GLN205 CYS206 SER207 GLU208 VAL209
Unit 2 ASN37 THR38 ILE39 HIS40 GLU41 PHE42 LYS43 LYS44 SER45 ALA46 LYS47 THR48 THR49 LEU50 ILE51 LYS52 ILE53 ASP54 PRO55 ALA56 LEU57 LYS58 ILE59 LYS60 THR61 LYS62 LYS63 VAL64 ASN65 THR66 ALA67 ASP68 GLN69 CYS70 ALA71 ASP72 ARG73 CYS74 THR75 ARG76 ASN77 LYS78 GLY79 LEU80 PRO81 PHE82 THR83 CYS84 LYS85 ALA86 PHE87 VAL88 PHE89 ASP90 LYS91 ALA92 ARG93 LYS94 GLN95 CYS96 LEU97 TRP98 PHE99 PRO100 PHE101 ASN102 SER103 MET104 SER105 SER106 GLY107 VAL108 LYS109 LYS110 GLU111 PHE112 GLY113 HIS114 GLU115 PHE116 ASP117 LEU118 TYR119 GLU120 ASN121 LYS122 ASP123 TYR124 ILE125 ARG126 ASN127 CYS128 ILE129 ILE130 GLY131 LYS132 GLY133 ARG134 SER135 TYR136 LYS137 GLY138 THR139 VAL140 SER141 ILE142 THR143 LYS144 SER145 GLY146 ILE147 LYS148 CYS149 GLN150 PRO151 TRP152 SER153 SER154 MET155 ILE156 PRO157 HIS158 GLU159 HIS160 SER161 PHE162 LEU163 PRO164 SER165 SER166 TYR167 ARG168 GLY169 LYS170 ASP171 LEU172 GLN173 GLU174 ASN175 TYR176 CYS177 ARG178 ASN179 PRO180 ARG181 GLY182 GLU183 GLU184 GLY185 GLY186 PRO187 TRP188 CYS189 PHE190 THR191 SER192 ASN193 PRO194 GLU195 VAL196 ARG197 TYR198 GLU199 VAL200 CYS201 ASP202 ILE203 PRO204 GLN205 CYS206 SER207 GLU208 VAL209
Unit 3 ASN37 THR38 ILE39 HIS40 GLU41 PHE42 LYS43 LYS44 SER45 ALA46 LYS47 THR48 THR49 LEU50 ILE51 LYS52 ILE53 ASP54 PRO55 ALA56 LEU57 LYS58 ILE59 LYS60 THR61 LYS62 LYS63 VAL64 ASN65 THR66 ALA67 ASP68 GLN69 CYS70 ALA71 ASP72 ARG73 CYS74 THR75 ARG76 ASN77 LYS78 GLY79 LEU80 PRO81 PHE82 THR83 CYS84 LYS85 ALA86 PHE87 VAL88 PHE89 ASP90 LYS91 ALA92 ARG93 LYS94 GLN95 CYS96 LEU97 TRP98 PHE99 PRO100 PHE101 ASN102 SER103 MET104 SER105 SER106 GLY107 VAL108 LYS109 LYS110 GLU111 PHE112 GLY113 HIS114 GLU115 PHE116 ASP117 LEU118 TYR119 GLU120 ASN121 LYS122 ASP123 TYR124 ILE125 ARG126 ASN127 CYS128 ILE129 ILE130 GLY131 LYS132 GLY133 ARG134 SER135 TYR136 LYS137 GLY138 THR139 VAL140 SER141 ILE142 THR143 LYS144 SER145 GLY146 ILE147 LYS148 CYS149 GLN150 PRO151 TRP152 SER153 SER154 MET155 ILE156 PRO157 HIS158 GLU159 HIS160 SER161 PHE162 LEU163 PRO164 SER165 SER166 TYR167 ARG168 GLY169 LYS170 ASP171 LEU172 GLN173 GLU174 ASN175 TYR176 CYS177 ARG178 ASN179 PRO180 ARG181 GLY182 GLU183 GLU184 GLY185 GLY186 PRO187 TRP188 CYS189 PHE190 THR191 SER192 ASN193 PRO194 GLU195 VAL196 ARG197 TYR198 GLU199 VAL200 CYS201 ASP202 ILE203 PRO204 GLN205 CYS206 SER207 GLU208 VAL209
Unit 4 ASN37 THR38 ILE39 HIS40 GLU41 PHE42 LYS43 LYS44 SER45 ALA46 LYS47 THR48 THR49 LEU50 ILE51 LYS52 ILE53 ASP54 PRO55 ALA56 LEU57 LYS58 ILE59 LYS60 THR61 LYS62 LYS63 VAL64 ASN65 THR66 ALA67 ASP68 GLN69 CYS70 ALA71 ASP72 ARG73 CYS74 THR75 ARG76 ASN77 LYS78 GLY79 LEU80 PRO81 PHE82 THR83 CYS84 LYS85 ALA86 PHE87 VAL88 PHE89 ASP90 LYS91 ALA92 ARG93 LYS94 GLN95 CYS96 LEU97 TRP98 PHE99 PRO100 PHE101 ASN102 SER103 MET104 SER105 SER106 GLY107 VAL108 LYS109 LYS110 GLU111 PHE112 GLY113 HIS114 GLU115 PHE116 ASP117 LEU118 TYR119 GLU120 ASN121 LYS122 ASP123 TYR124 ILE125 ARG126 ASN127 CYS128 ILE129 ILE130 GLY131 LYS132 GLY133 ARG134 SER135 TYR136 LYS137 GLY138 THR139 VAL140 SER141 ILE142 THR143 LYS144 SER145 GLY146 ILE147 LYS148 CYS149 GLN150 PRO151 TRP152 SER153 SER154 MET155 ILE156 PRO157 HIS158 GLU159 HIS160 SER161 PHE162 LEU163 PRO164 SER165 SER166 TYR167 ARG168 GLY169 LYS170 ASP171 LEU172 GLN173 GLU174 ASN175 TYR176 CYS177 ARG178 ASN179 PRO180 ARG181 GLY182 GLU183 GLU184 GLY185 GLY186 PRO187 TRP188 CYS189 PHE190 THR191 SER192 ASN193 PRO194 GLU195 VAL196 ARG197 TYR198 GLU199 VAL200 CYS201 ASP202 ILE203 PRO204 GLN205 CYS206 SER207 GLU208 VAL209
Unit 5 ASN37 THR38 ILE39 HIS40 GLU41 PHE42 LYS43 LYS44 SER45 ALA46 LYS47 THR48 THR49 LEU50 ILE51 LYS52 ILE53 ASP54 PRO55 ALA56 LEU57 LYS58 ILE59 LYS60 THR61 LYS62 LYS63 VAL64 ASN65 THR66 ALA67 ASP68 GLN69 CYS70 ALA71 ASP72 ARG73 CYS74 THR75 ARG76 ASN77 LYS78 GLY79 LEU80 PRO81 PHE82 THR83 CYS84 LYS85 ALA86 PHE87 VAL88 PHE89 ASP90 LYS91 ALA92 ARG93 LYS94 GLN95 CYS96 LEU97 TRP98 PHE99 PRO100 PHE101 ASN102 SER103 MET104 SER105 SER106 GLY107 VAL108 LYS109 LYS110 GLU111 PHE112 GLY113 HIS114 GLU115 PHE116 ASP117 LEU118 TYR119 GLU120 ASN121 LYS122 ASP123 TYR124 ILE125 ARG126 ASN127 CYS128 ILE129 ILE130 GLY131 LYS132 GLY133 ARG134 SER135 TYR136 LYS137 GLY138 THR139 VAL140 SER141 ILE142 THR143 LYS144 SER145 GLY146 ILE147 LYS148 CYS149 GLN150 PRO151 TRP152 SER153 SER154 MET155 ILE156 PRO157 HIS158 GLU159 HIS160 SER161 PHE162 LEU163 PRO164 SER165 SER166 TYR167 ARG168 GLY169 LYS170 ASP171 LEU172 GLN173 GLU174 ASN175 TYR176 CYS177 ARG178 ASN179 PRO180 ARG181 GLY182 GLU183 GLU184 GLY185 GLY186 PRO187 TRP188 CYS189 PHE190 THR191 SER192 ASN193 PRO194 GLU195 VAL196 ARG197 TYR198 GLU199 VAL200 CYS201 ASP202 ILE203 PRO204 GLN205 CYS206 SER207 GLU208 VAL209 GLU210
Unit 6 ASN37 THR38 ILE39 HIS40 GLU41 PHE42 LYS43 LYS44 SER45 ALA46 LYS47 THR48 THR49 LEU50 ILE51 LYS52 ILE53 ASP54 PRO55 ALA56 LEU57 LYS58 ILE59 LYS60 THR61 LYS62 LYS63 VAL64 ASN65 THR66 ALA67 ASP68 GLN69 CYS70 ALA71 ASP72 ARG73 CYS74 THR75 ARG76 ASN77 LYS78 GLY79 LEU80 PRO81 PHE82 THR83 CYS84 LYS85 ALA86 PHE87 VAL88 PHE89 ASP90 LYS91 ALA92 ARG93 LYS94 GLN95 CYS96 LEU97 TRP98 PHE99 PRO100 PHE101 ASN102 SER103 MET104 SER105 SER106 GLY107 VAL108 LYS109 LYS110 GLU111 PHE112 GLY113 HIS114 GLU115 PHE116 ASP117 LEU118 TYR119 GLU120 ASN121 LYS122 ASP123 TYR124 ILE125 ARG126 ASN127 CYS128 ILE129 ILE130 GLY131 LYS132 GLY133 ARG134 SER135 TYR136 LYS137 GLY138 THR139 VAL140 SER141 ILE142 THR143 LYS144 SER145 GLY146 ILE147 LYS148 CYS149 GLN150 PRO151 TRP152 SER153 SER154 MET155 ILE156 PRO157 HIS158 GLU159 HIS160 SER161 PHE162 LEU163 PRO164 SER165 SER166 TYR167 ARG168 GLY169 LYS170 ASP171 LEU172 GLN173 GLU174 ASN175 TYR176 CYS177 ARG178 ASN179 PRO180 ARG181 GLY182 GLU183 GLU184 GLY185 GLY186 PRO187 TRP188 CYS189 PHE190 THR191 SER192 ASN193 PRO194 GLU195 VAL196 ARG197 TYR198 GLU199 VAL200 CYS201 ASP202 ILE203 PRO204 GLN205 CYS206 SER207 GLU208 VAL209 GLU210
Unit 7 THR38 ILE39 HIS40 GLU41 PHE42 LYS43 LYS44 SER45 ALA46 LYS47 THR48 THR49 LEU50 LYS58 ILE59 LYS60 THR61 LYS62 LYS63 VAL64 ASN65 THR66 ALA67 ASP68 GLN69 CYS70 ALA71 ASP72 ARG73 CYS74 THR75 ARG76 ASN77 LYS78 GLY79 LEU80 PRO81 PHE82 THR83 CYS84 LYS85 ALA86 PHE87 VAL88 PHE89 ASP90 LYS91 ALA92 ARG93 LYS94 GLN95 CYS96 LEU97 TRP98 PHE99 PRO100 PHE101 ASN102 SER103 MET104 SER105 SER106 GLY107 VAL108 LYS109 LYS110 GLU111 PHE112 GLY113 HIS114 GLU115 PHE116 ASP117 LEU118 TYR119 GLU120 ASN121 LYS122 ASP123 TYR124 ILE125 ARG126 ASN127 CYS128 ILE129 ILE130 GLY131 LYS132 GLY133 ARG134 SER135 TYR136 LYS137 GLY138 THR139 VAL140 SER141 ILE142 THR143 LYS144 SER145 GLY146 ILE147 LYS148 CYS149 GLN150 PRO151 TRP152 SER153 SER154 MET155 ILE156 PRO157 HIS158 GLU159 HIS160 SER161 PHE162 LEU163 PRO164 SER165 SER166 TYR167 ARG168 GLY169 LYS170 ASP171 LEU172 GLN173 GLU174 ASN175 TYR176 CYS177 ARG178 ASN179 PRO180 ARG181 GLY182 GLU183 GLU184 GLY185 GLY186 PRO187 TRP188 CYS189 PHE190 THR191 SER192 ASN193 PRO194 GLU195 VAL196 ARG197 TYR198 GLU199 VAL200 CYS201 ASP202 ILE203 PRO204 GLN205 CYS206 SER207 GLU208 VAL209
Unit 8 THR38 ILE39 HIS40 GLU41 PHE42 LYS43 LYS44 SER45 ALA46 LYS47 THR48 THR49 LEU50 ILE51 LYS52 ILE53 ASP54 PRO55 ALA56 LEU57 LYS58 ILE59 LYS60 THR61 LYS62 LYS63 VAL64 ASN65 THR66 ALA67 ASP68 GLN69 CYS70 ALA71 ASP72 ARG73 CYS74 THR75 ARG76 ASN77 LYS78 GLY79 LEU80 PRO81 PHE82 THR83 CYS84 LYS85 ALA86 PHE87 VAL88 PHE89 ASP90 LYS91 ALA92 ARG93 LYS94 GLN95 CYS96 LEU97 TRP98 PHE99 PRO100 PHE101 ASN102 SER103 MET104 SER105 SER106 GLY107 VAL108 LYS109 LYS110 GLU111 PHE112 GLY113 HIS114 GLU115 PHE116 ASP117 LEU118 TYR119 GLU120 ASN121 LYS122 ASP123 TYR124 ILE125 ARG126 ASN127 CYS128 ILE129 ILE130 GLY131 LYS132 GLY133 ARG134 SER135 TYR136 LYS137 GLY138 THR139 VAL140 SER141 ILE142 THR143 LYS144 SER145 GLY146 ILE147 LYS148 CYS149 GLN150 PRO151 TRP152 SER153 SER154 MET155 ILE156 PRO157 HIS158 GLU159 HIS160 SER161 PHE162 LEU163 PRO164 SER165 SER166 TYR167 ARG168 GLY169 LYS170 ASP171 LEU172 GLN173 GLU174 ASN175 TYR176 CYS177 ARG178 ASN179 PRO180 ARG181 GLY182 GLU183 GLU184 GLY185 GLY186 PRO187 TRP188 CYS189 PHE190 THR191 SER192 ASN193 PRO194 GLU195 VAL196 ARG197 TYR198 GLU199 VAL200 CYS201 ASP202 ILE203 PRO204 GLN205 CYS206 SER207 GLU208 VAL209
Ligands
Unit 9 IDS1 SGN2 IDS3 SGN4 IDS5 SGN6
Unit 10 IDS1 SGN2 IDS3 SGN4 IDS5 SGN6 IDS7
Unit 11 IDS1 SGN2 IDS3 SGN4 IDS5 SGN6 IDS7 SGN8
Unit 12 SGN1 IDS2 SGN3 IDS4 SGN5 IDS6 SGN7 IDS8 SGN9
Unit 13 SGN1 IDS2 SGN3 IDS4 SGN5 IDS6
Unit 14 SGN1 IDS2 SGN3 IDS4 SGN5 IDS6
Unit 15 SO4307 EPE308
Unit 16 SO4308 EPE317
Unit 17 SO4301 EPE311
Unit 18 SO4301 EPE302
Unit 19 SO4301 EPE302
Unit 20 SO4307 SO4308 EPE309
Unit 21 EPE307
Unit 22 SO4301 EPE302
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany