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Sequence, Chains, Asymmetric and Biological Units

Title D-HYDANTOINASE (DIHYDROPYRIMIDINASE) FROM THERMUS SP. IN SPA P212121
Keywords HYDROLASE, HYDANTOINASE, DIHYDROPYRIMIDINASE, CYCLIC AMIDASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1GKQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HYDANTOINASE  A 458 3564 12
2  Protein   HYDANTOINASE  B 458 3564 12
3  Protein   HYDANTOINASE  C 458 3564 12
4  Protein   HYDANTOINASE  D 458 3564 12
5  Ligand   HYDANTOINASE  A 2 0 2
6  Ligand   HYDANTOINASE  B 2 0 2
7  Ligand   HYDANTOINASE  C 2 0 2
8  Ligand   HYDANTOINASE  D 2 0 2
9 Water     489 0 489
total       2329 14256 545

Proteins
Unit 1 PRO2 LEU3 LEU4 ILE5 LYS6 ASN7 GLY8 GLU9 ILE10 ILE11 THR12 ALA13 ASP14 SER15 ARG16 TYR17 LYS18 ALA19 ASP20 ILE21 TYR22 ALA23 GLU24 GLY25 GLU26 THR27 ILE28 THR29 ARG30 ILE31 GLY32 GLN33 ASN34 LEU35 GLU36 ALA37 PRO38 PRO39 GLY40 THR41 GLU42 VAL43 ILE44 ASP45 ALA46 THR47 GLY48 LYS49 TYR50 VAL51 PHE52 PRO53 GLY54 PHE55 ILE56 ASP57 PRO58 HIS59 VAL60 HIS61 ILE62 TYR63 LEU64 PRO65 PHE66 MET67 ALA68 THR69 PHE70 ALA71 LYS72 ASP73 THR74 HIS75 GLU76 THR77 GLY78 SER79 LYS80 ALA81 ALA82 LEU83 MET84 GLY85 GLY86 THR87 THR88 THR89 TYR90 ILE91 GLU92 MET93 CYS94 CYS95 PRO96 SER97 ARG98 ASN99 ASP100 ASP101 ALA102 LEU103 GLU104 GLY105 TYR106 GLN107 LEU108 TRP109 LYS110 SER111 LYS112 ALA113 GLU114 GLY115 ASN116 SER117 TYR118 CYS119 ASP120 TYR121 THR122 PHE123 HIS124 MET125 ALA126 VAL127 SER128 LYS129 PHE130 ASP131 GLU132 LYS133 THR134 GLU135 GLY136 GLN137 LEU138 ARG139 GLU140 ILE141 VAL142 ALA143 ASP144 GLY145 ILE146 SER147 SER148 PHE149 KCX150 ILE151 PHE152 LEU153 SER154 TYR155 LYS156 ASN157 PHE158 PHE159 GLY160 VAL161 ASP162 ASP163 GLY164 GLU165 MET166 TYR167 GLN168 THR169 LEU170 ARG171 LEU172 ALA173 LYS174 GLU175 LEU176 GLY177 VAL178 ILE179 VAL180 THR181 ALA182 HIS183 CYS184 GLU185 ASN186 ALA187 GLU188 LEU189 VAL190 GLY191 ARG192 LEU193 GLN194 GLN195 LYS196 LEU197 LEU198 SER199 GLU200 GLY201 LYS202 THR203 GLY204 PRO205 GLU206 TRP207 HIS208 GLU209 PRO210 SER211 ARG212 PRO213 GLU214 ALA215 VAL216 GLU217 ALA218 GLU219 GLY220 THR221 ALA222 ARG223 PHE224 ALA225 THR226 PHE227 LEU228 GLU229 THR230 THR231 GLY232 ALA233 THR234 GLY235 TYR236 VAL237 VAL238 HIS239 LEU240 SER241 CYS242 LYS243 PRO244 ALA245 LEU246 ASP247 ALA248 ALA249 MET250 ALA251 ALA252 LYS253 ALA254 ARG255 GLY256 VAL257 PRO258 ILE259 TYR260 ILE261 GLU262 SER263 VAL264 ILE265 PRO266 HIS267 PHE268 LEU269 LEU270 ASP271 LYS272 THR273 TYR274 ALA275 GLU276 ARG277 GLY278 GLY279 VAL280 GLU281 ALA282 MET283 LYS284 TYR285 ILE286 MET287 SER288 PRO289 PRO290 LEU291 ARG292 ASP293 LYS294 ARG295 ASN296 GLN297 LYS298 VAL299 LEU300 TRP301 ASP302 ALA303 LEU304 ALA305 GLN306 GLY307 PHE308 ILE309 ASP310 THR311 VAL312 GLY313 THR314 ASP315 HIS316 CYS317 PRO318 PHE319 ASP320 THR321 GLU322 GLN323 LYS324 LEU325 LEU326 GLY327 LYS328 GLU329 ALA330 PHE331 THR332 ALA333 ILE334 PRO335 ASN336 GLY337 ILE338 PRO339 ALA340 ILE341 GLU342 ASP343 ARG344 VAL345 ASN346 LEU347 LEU348 TYR349 THR350 TYR351 GLY352 VAL353 SER354 ARG355 GLY356 ARG357 LEU358 ASP359 ILE360 HIS361 ARG362 PHE363 VAL364 ASP365 ALA366 ALA367 SER368 THR369 LYS370 ALA371 ALA372 LYS373 LEU374 PHE375 GLY376 LEU377 PHE378 PRO379 ARG380 LYS381 GLY382 THR383 ILE384 ALA385 VAL386 GLY387 SER388 ASP389 ALA390 ASP391 LEU392 VAL393 VAL394 TYR395 ASP396 PRO397 GLN398 TYR399 ARG400 GLY401 THR402 ILE403 SER404 VAL405 LYS406 THR407 GLN408 HIS409 VAL410 ASN411 ASN412 ASP413 TYR414 ASN415 GLY416 PHE417 GLU418 GLY419 PHE420 GLU421 ILE422 ASP423 GLY424 ARG425 PRO426 SER427 VAL428 VAL429 THR430 VAL431 ARG432 GLY433 LYS434 VAL435 ALA436 VAL437 ARG438 ASP439 GLY440 GLN441 PHE442 VAL443 GLY444 GLU445 LYS446 GLY447 TRP448 GLY449 LYS450 LEU451 LEU452 ARG453 ARG454 GLU455 PRO456 MET457 TYR458 PHE459
Unit 2 PRO2 LEU3 LEU4 ILE5 LYS6 ASN7 GLY8 GLU9 ILE10 ILE11 THR12 ALA13 ASP14 SER15 ARG16 TYR17 LYS18 ALA19 ASP20 ILE21 TYR22 ALA23 GLU24 GLY25 GLU26 THR27 ILE28 THR29 ARG30 ILE31 GLY32 GLN33 ASN34 LEU35 GLU36 ALA37 PRO38 PRO39 GLY40 THR41 GLU42 VAL43 ILE44 ASP45 ALA46 THR47 GLY48 LYS49 TYR50 VAL51 PHE52 PRO53 GLY54 PHE55 ILE56 ASP57 PRO58 HIS59 VAL60 HIS61 ILE62 TYR63 LEU64 PRO65 PHE66 MET67 ALA68 THR69 PHE70 ALA71 LYS72 ASP73 THR74 HIS75 GLU76 THR77 GLY78 SER79 LYS80 ALA81 ALA82 LEU83 MET84 GLY85 GLY86 THR87 THR88 THR89 TYR90 ILE91 GLU92 MET93 CYS94 CYS95 PRO96 SER97 ARG98 ASN99 ASP100 ASP101 ALA102 LEU103 GLU104 GLY105 TYR106 GLN107 LEU108 TRP109 LYS110 SER111 LYS112 ALA113 GLU114 GLY115 ASN116 SER117 TYR118 CYS119 ASP120 TYR121 THR122 PHE123 HIS124 MET125 ALA126 VAL127 SER128 LYS129 PHE130 ASP131 GLU132 LYS133 THR134 GLU135 GLY136 GLN137 LEU138 ARG139 GLU140 ILE141 VAL142 ALA143 ASP144 GLY145 ILE146 SER147 SER148 PHE149 KCX150 ILE151 PHE152 LEU153 SER154 TYR155 LYS156 ASN157 PHE158 PHE159 GLY160 VAL161 ASP162 ASP163 GLY164 GLU165 MET166 TYR167 GLN168 THR169 LEU170 ARG171 LEU172 ALA173 LYS174 GLU175 LEU176 GLY177 VAL178 ILE179 VAL180 THR181 ALA182 HIS183 CYS184 GLU185 ASN186 ALA187 GLU188 LEU189 VAL190 GLY191 ARG192 LEU193 GLN194 GLN195 LYS196 LEU197 LEU198 SER199 GLU200 GLY201 LYS202 THR203 GLY204 PRO205 GLU206 TRP207 HIS208 GLU209 PRO210 SER211 ARG212 PRO213 GLU214 ALA215 VAL216 GLU217 ALA218 GLU219 GLY220 THR221 ALA222 ARG223 PHE224 ALA225 THR226 PHE227 LEU228 GLU229 THR230 THR231 GLY232 ALA233 THR234 GLY235 TYR236 VAL237 VAL238 HIS239 LEU240 SER241 CYS242 LYS243 PRO244 ALA245 LEU246 ASP247 ALA248 ALA249 MET250 ALA251 ALA252 LYS253 ALA254 ARG255 GLY256 VAL257 PRO258 ILE259 TYR260 ILE261 GLU262 SER263 VAL264 ILE265 PRO266 HIS267 PHE268 LEU269 LEU270 ASP271 LYS272 THR273 TYR274 ALA275 GLU276 ARG277 GLY278 GLY279 VAL280 GLU281 ALA282 MET283 LYS284 TYR285 ILE286 MET287 SER288 PRO289 PRO290 LEU291 ARG292 ASP293 LYS294 ARG295 ASN296 GLN297 LYS298 VAL299 LEU300 TRP301 ASP302 ALA303 LEU304 ALA305 GLN306 GLY307 PHE308 ILE309 ASP310 THR311 VAL312 GLY313 THR314 ASP315 HIS316 CYS317 PRO318 PHE319 ASP320 THR321 GLU322 GLN323 LYS324 LEU325 LEU326 GLY327 LYS328 GLU329 ALA330 PHE331 THR332 ALA333 ILE334 PRO335 ASN336 GLY337 ILE338 PRO339 ALA340 ILE341 GLU342 ASP343 ARG344 VAL345 ASN346 LEU347 LEU348 TYR349 THR350 TYR351 GLY352 VAL353 SER354 ARG355 GLY356 ARG357 LEU358 ASP359 ILE360 HIS361 ARG362 PHE363 VAL364 ASP365 ALA366 ALA367 SER368 THR369 LYS370 ALA371 ALA372 LYS373 LEU374 PHE375 GLY376 LEU377 PHE378 PRO379 ARG380 LYS381 GLY382 THR383 ILE384 ALA385 VAL386 GLY387 SER388 ASP389 ALA390 ASP391 LEU392 VAL393 VAL394 TYR395 ASP396 PRO397 GLN398 TYR399 ARG400 GLY401 THR402 ILE403 SER404 VAL405 LYS406 THR407 GLN408 HIS409 VAL410 ASN411 ASN412 ASP413 TYR414 ASN415 GLY416 PHE417 GLU418 GLY419 PHE420 GLU421 ILE422 ASP423 GLY424 ARG425 PRO426 SER427 VAL428 VAL429 THR430 VAL431 ARG432 GLY433 LYS434 VAL435 ALA436 VAL437 ARG438 ASP439 GLY440 GLN441 PHE442 VAL443 GLY444 GLU445 LYS446 GLY447 TRP448 GLY449 LYS450 LEU451 LEU452 ARG453 ARG454 GLU455 PRO456 MET457 TYR458 PHE459
Unit 3 PRO2 LEU3 LEU4 ILE5 LYS6 ASN7 GLY8 GLU9 ILE10 ILE11 THR12 ALA13 ASP14 SER15 ARG16 TYR17 LYS18 ALA19 ASP20 ILE21 TYR22 ALA23 GLU24 GLY25 GLU26 THR27 ILE28 THR29 ARG30 ILE31 GLY32 GLN33 ASN34 LEU35 GLU36 ALA37 PRO38 PRO39 GLY40 THR41 GLU42 VAL43 ILE44 ASP45 ALA46 THR47 GLY48 LYS49 TYR50 VAL51 PHE52 PRO53 GLY54 PHE55 ILE56 ASP57 PRO58 HIS59 VAL60 HIS61 ILE62 TYR63 LEU64 PRO65 PHE66 MET67 ALA68 THR69 PHE70 ALA71 LYS72 ASP73 THR74 HIS75 GLU76 THR77 GLY78 SER79 LYS80 ALA81 ALA82 LEU83 MET84 GLY85 GLY86 THR87 THR88 THR89 TYR90 ILE91 GLU92 MET93 CYS94 CYS95 PRO96 SER97 ARG98 ASN99 ASP100 ASP101 ALA102 LEU103 GLU104 GLY105 TYR106 GLN107 LEU108 TRP109 LYS110 SER111 LYS112 ALA113 GLU114 GLY115 ASN116 SER117 TYR118 CYS119 ASP120 TYR121 THR122 PHE123 HIS124 MET125 ALA126 VAL127 SER128 LYS129 PHE130 ASP131 GLU132 LYS133 THR134 GLU135 GLY136 GLN137 LEU138 ARG139 GLU140 ILE141 VAL142 ALA143 ASP144 GLY145 ILE146 SER147 SER148 PHE149 KCX150 ILE151 PHE152 LEU153 SER154 TYR155 LYS156 ASN157 PHE158 PHE159 GLY160 VAL161 ASP162 ASP163 GLY164 GLU165 MET166 TYR167 GLN168 THR169 LEU170 ARG171 LEU172 ALA173 LYS174 GLU175 LEU176 GLY177 VAL178 ILE179 VAL180 THR181 ALA182 HIS183 CYS184 GLU185 ASN186 ALA187 GLU188 LEU189 VAL190 GLY191 ARG192 LEU193 GLN194 GLN195 LYS196 LEU197 LEU198 SER199 GLU200 GLY201 LYS202 THR203 GLY204 PRO205 GLU206 TRP207 HIS208 GLU209 PRO210 SER211 ARG212 PRO213 GLU214 ALA215 VAL216 GLU217 ALA218 GLU219 GLY220 THR221 ALA222 ARG223 PHE224 ALA225 THR226 PHE227 LEU228 GLU229 THR230 THR231 GLY232 ALA233 THR234 GLY235 TYR236 VAL237 VAL238 HIS239 LEU240 SER241 CYS242 LYS243 PRO244 ALA245 LEU246 ASP247 ALA248 ALA249 MET250 ALA251 ALA252 LYS253 ALA254 ARG255 GLY256 VAL257 PRO258 ILE259 TYR260 ILE261 GLU262 SER263 VAL264 ILE265 PRO266 HIS267 PHE268 LEU269 LEU270 ASP271 LYS272 THR273 TYR274 ALA275 GLU276 ARG277 GLY278 GLY279 VAL280 GLU281 ALA282 MET283 LYS284 TYR285 ILE286 MET287 SER288 PRO289 PRO290 LEU291 ARG292 ASP293 LYS294 ARG295 ASN296 GLN297 LYS298 VAL299 LEU300 TRP301 ASP302 ALA303 LEU304 ALA305 GLN306 GLY307 PHE308 ILE309 ASP310 THR311 VAL312 GLY313 THR314 ASP315 HIS316 CYS317 PRO318 PHE319 ASP320 THR321 GLU322 GLN323 LYS324 LEU325 LEU326 GLY327 LYS328 GLU329 ALA330 PHE331 THR332 ALA333 ILE334 PRO335 ASN336 GLY337 ILE338 PRO339 ALA340 ILE341 GLU342 ASP343 ARG344 VAL345 ASN346 LEU347 LEU348 TYR349 THR350 TYR351 GLY352 VAL353 SER354 ARG355 GLY356 ARG357 LEU358 ASP359 ILE360 HIS361 ARG362 PHE363 VAL364 ASP365 ALA366 ALA367 SER368 THR369 LYS370 ALA371 ALA372 LYS373 LEU374 PHE375 GLY376 LEU377 PHE378 PRO379 ARG380 LYS381 GLY382 THR383 ILE384 ALA385 VAL386 GLY387 SER388 ASP389 ALA390 ASP391 LEU392 VAL393 VAL394 TYR395 ASP396 PRO397 GLN398 TYR399 ARG400 GLY401 THR402 ILE403 SER404 VAL405 LYS406 THR407 GLN408 HIS409 VAL410 ASN411 ASN412 ASP413 TYR414 ASN415 GLY416 PHE417 GLU418 GLY419 PHE420 GLU421 ILE422 ASP423 GLY424 ARG425 PRO426 SER427 VAL428 VAL429 THR430 VAL431 ARG432 GLY433 LYS434 VAL435 ALA436 VAL437 ARG438 ASP439 GLY440 GLN441 PHE442 VAL443 GLY444 GLU445 LYS446 GLY447 TRP448 GLY449 LYS450 LEU451 LEU452 ARG453 ARG454 GLU455 PRO456 MET457 TYR458 PHE459
Unit 4 PRO2 LEU3 LEU4 ILE5 LYS6 ASN7 GLY8 GLU9 ILE10 ILE11 THR12 ALA13 ASP14 SER15 ARG16 TYR17 LYS18 ALA19 ASP20 ILE21 TYR22 ALA23 GLU24 GLY25 GLU26 THR27 ILE28 THR29 ARG30 ILE31 GLY32 GLN33 ASN34 LEU35 GLU36 ALA37 PRO38 PRO39 GLY40 THR41 GLU42 VAL43 ILE44 ASP45 ALA46 THR47 GLY48 LYS49 TYR50 VAL51 PHE52 PRO53 GLY54 PHE55 ILE56 ASP57 PRO58 HIS59 VAL60 HIS61 ILE62 TYR63 LEU64 PRO65 PHE66 MET67 ALA68 THR69 PHE70 ALA71 LYS72 ASP73 THR74 HIS75 GLU76 THR77 GLY78 SER79 LYS80 ALA81 ALA82 LEU83 MET84 GLY85 GLY86 THR87 THR88 THR89 TYR90 ILE91 GLU92 MET93 CYS94 CYS95 PRO96 SER97 ARG98 ASN99 ASP100 ASP101 ALA102 LEU103 GLU104 GLY105 TYR106 GLN107 LEU108 TRP109 LYS110 SER111 LYS112 ALA113 GLU114 GLY115 ASN116 SER117 TYR118 CYS119 ASP120 TYR121 THR122 PHE123 HIS124 MET125 ALA126 VAL127 SER128 LYS129 PHE130 ASP131 GLU132 LYS133 THR134 GLU135 GLY136 GLN137 LEU138 ARG139 GLU140 ILE141 VAL142 ALA143 ASP144 GLY145 ILE146 SER147 SER148 PHE149 KCX150 ILE151 PHE152 LEU153 SER154 TYR155 LYS156 ASN157 PHE158 PHE159 GLY160 VAL161 ASP162 ASP163 GLY164 GLU165 MET166 TYR167 GLN168 THR169 LEU170 ARG171 LEU172 ALA173 LYS174 GLU175 LEU176 GLY177 VAL178 ILE179 VAL180 THR181 ALA182 HIS183 CYS184 GLU185 ASN186 ALA187 GLU188 LEU189 VAL190 GLY191 ARG192 LEU193 GLN194 GLN195 LYS196 LEU197 LEU198 SER199 GLU200 GLY201 LYS202 THR203 GLY204 PRO205 GLU206 TRP207 HIS208 GLU209 PRO210 SER211 ARG212 PRO213 GLU214 ALA215 VAL216 GLU217 ALA218 GLU219 GLY220 THR221 ALA222 ARG223 PHE224 ALA225 THR226 PHE227 LEU228 GLU229 THR230 THR231 GLY232 ALA233 THR234 GLY235 TYR236 VAL237 VAL238 HIS239 LEU240 SER241 CYS242 LYS243 PRO244 ALA245 LEU246 ASP247 ALA248 ALA249 MET250 ALA251 ALA252 LYS253 ALA254 ARG255 GLY256 VAL257 PRO258 ILE259 TYR260 ILE261 GLU262 SER263 VAL264 ILE265 PRO266 HIS267 PHE268 LEU269 LEU270 ASP271 LYS272 THR273 TYR274 ALA275 GLU276 ARG277 GLY278 GLY279 VAL280 GLU281 ALA282 MET283 LYS284 TYR285 ILE286 MET287 SER288 PRO289 PRO290 LEU291 ARG292 ASP293 LYS294 ARG295 ASN296 GLN297 LYS298 VAL299 LEU300 TRP301 ASP302 ALA303 LEU304 ALA305 GLN306 GLY307 PHE308 ILE309 ASP310 THR311 VAL312 GLY313 THR314 ASP315 HIS316 CYS317 PRO318 PHE319 ASP320 THR321 GLU322 GLN323 LYS324 LEU325 LEU326 GLY327 LYS328 GLU329 ALA330 PHE331 THR332 ALA333 ILE334 PRO335 ASN336 GLY337 ILE338 PRO339 ALA340 ILE341 GLU342 ASP343 ARG344 VAL345 ASN346 LEU347 LEU348 TYR349 THR350 TYR351 GLY352 VAL353 SER354 ARG355 GLY356 ARG357 LEU358 ASP359 ILE360 HIS361 ARG362 PHE363 VAL364 ASP365 ALA366 ALA367 SER368 THR369 LYS370 ALA371 ALA372 LYS373 LEU374 PHE375 GLY376 LEU377 PHE378 PRO379 ARG380 LYS381 GLY382 THR383 ILE384 ALA385 VAL386 GLY387 SER388 ASP389 ALA390 ASP391 LEU392 VAL393 VAL394 TYR395 ASP396 PRO397 GLN398 TYR399 ARG400 GLY401 THR402 ILE403 SER404 VAL405 LYS406 THR407 GLN408 HIS409 VAL410 ASN411 ASN412 ASP413 TYR414 ASN415 GLY416 PHE417 GLU418 GLY419 PHE420 GLU421 ILE422 ASP423 GLY424 ARG425 PRO426 SER427 VAL428 VAL429 THR430 VAL431 ARG432 GLY433 LYS434 VAL435 ALA436 VAL437 ARG438 ASP439 GLY440 GLN441 PHE442 VAL443 GLY444 GLU445 LYS446 GLY447 TRP448 GLY449 LYS450 LEU451 LEU452 ARG453 ARG454 GLU455 PRO456 MET457 TYR458 PHE459

Ligands
Unit 5 ZN1460 ZN1461
Unit 6 ZN1460 ZN1461
Unit 7 ZN1460 ZN1461
Unit 8 ZN1460 ZN1461

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany