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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE MUTANT Q252L COMP NAD+
Keywords SHORT-CHAIN DEHYDROGENASE/REDUCTASE, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1GEE     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUCOSE 1-DEHYDROGENASE  A 261 1971 0
2  Protein   GLUCOSE 1-DEHYDROGENASE  B 261 1971 0
3  Protein   GLUCOSE 1-DEHYDROGENASE  E 261 1971 0
4  Protein   GLUCOSE 1-DEHYDROGENASE  F 261 1971 0
5  Ligand   GLUCOSE 1-DEHYDROGENASE  A 1 0 44
6  Ligand   GLUCOSE 1-DEHYDROGENASE  B 1 0 44
7  Ligand   GLUCOSE 1-DEHYDROGENASE  E 1 0 44
8  Ligand   GLUCOSE 1-DEHYDROGENASE  F 1 0 44
9 Water     522 0 522
total       1570 7884 698
Proteins
Unit 1 MET1 TYR2 LYS3 ASP4 LEU5 GLU6 GLY7 LYS8 VAL9 VAL10 VAL11 ILE12 THR13 GLY14 SER15 SER16 THR17 GLY18 LEU19 GLY20 LYS21 SER22 MET23 ALA24 ILE25 ARG26 PHE27 ALA28 THR29 GLU30 LYS31 ALA32 LYS33 VAL34 VAL35 VAL36 ASN37 TYR38 ARG39 SER40 LYS41 GLU42 ASP43 GLU44 ALA45 ASN46 SER47 VAL48 LEU49 GLU50 GLU51 ILE52 LYS53 LYS54 VAL55 GLY56 GLY57 GLU58 ALA59 ILE60 ALA61 VAL62 LYS63 GLY64 ASP65 VAL66 THR67 VAL68 GLU69 SER70 ASP71 VAL72 ILE73 ASN74 LEU75 VAL76 GLN77 SER78 ALA79 ILE80 LYS81 GLU82 PHE83 GLY84 LYS85 LEU86 ASP87 VAL88 MET89 ILE90 ASN91 ASN92 ALA93 GLY94 LEU95 GLU96 ASN97 PRO98 VAL99 SER100 SER101 HIS102 GLU103 MET104 SER105 LEU106 SER107 ASP108 TRP109 ASN110 LYS111 VAL112 ILE113 ASP114 THR115 ASN116 LEU117 THR118 GLY119 ALA120 PHE121 LEU122 GLY123 SER124 ARG125 GLU126 ALA127 ILE128 LYS129 TYR130 PHE131 VAL132 GLU133 ASN134 ASP135 ILE136 LYS137 GLY138 THR139 VAL140 ILE141 ASN142 MET143 SER144 SER145 VAL146 HIS147 GLU148 LYS149 ILE150 PRO151 TRP152 PRO153 LEU154 PHE155 VAL156 HIS157 TYR158 ALA159 ALA160 SER161 LYS162 GLY163 GLY164 MET165 LYS166 LEU167 MET168 THR169 GLU170 THR171 LEU172 ALA173 LEU174 GLU175 TYR176 ALA177 PRO178 LYS179 GLY180 ILE181 ARG182 VAL183 ASN184 ASN185 ILE186 GLY187 PRO188 GLY189 ALA190 ILE191 ASN192 THR193 PRO194 ILE195 ASN196 ALA197 GLU198 LYS199 PHE200 ALA201 ASP202 PRO203 GLU204 GLN205 ARG206 ALA207 ASP208 VAL209 GLU210 SER211 MET212 ILE213 PRO214 MET215 GLY216 TYR217 ILE218 GLY219 GLU220 PRO221 GLU222 GLU223 ILE224 ALA225 ALA226 VAL227 ALA228 ALA229 TRP230 LEU231 ALA232 SER233 SER234 GLU235 ALA236 SER237 TYR238 VAL239 THR240 GLY241 ILE242 THR243 LEU244 PHE245 ALA246 ASP247 GLY248 GLY249 MET250 THR251 LEU252 TYR253 PRO254 SER255 PHE256 GLN257 ALA258 GLY259 ARG260 GLY261
Unit 2 MET1 TYR2 LYS3 ASP4 LEU5 GLU6 GLY7 LYS8 VAL9 VAL10 VAL11 ILE12 THR13 GLY14 SER15 SER16 THR17 GLY18 LEU19 GLY20 LYS21 SER22 MET23 ALA24 ILE25 ARG26 PHE27 ALA28 THR29 GLU30 LYS31 ALA32 LYS33 VAL34 VAL35 VAL36 ASN37 TYR38 ARG39 SER40 LYS41 GLU42 ASP43 GLU44 ALA45 ASN46 SER47 VAL48 LEU49 GLU50 GLU51 ILE52 LYS53 LYS54 VAL55 GLY56 GLY57 GLU58 ALA59 ILE60 ALA61 VAL62 LYS63 GLY64 ASP65 VAL66 THR67 VAL68 GLU69 SER70 ASP71 VAL72 ILE73 ASN74 LEU75 VAL76 GLN77 SER78 ALA79 ILE80 LYS81 GLU82 PHE83 GLY84 LYS85 LEU86 ASP87 VAL88 MET89 ILE90 ASN91 ASN92 ALA93 GLY94 LEU95 GLU96 ASN97 PRO98 VAL99 SER100 SER101 HIS102 GLU103 MET104 SER105 LEU106 SER107 ASP108 TRP109 ASN110 LYS111 VAL112 ILE113 ASP114 THR115 ASN116 LEU117 THR118 GLY119 ALA120 PHE121 LEU122 GLY123 SER124 ARG125 GLU126 ALA127 ILE128 LYS129 TYR130 PHE131 VAL132 GLU133 ASN134 ASP135 ILE136 LYS137 GLY138 THR139 VAL140 ILE141 ASN142 MET143 SER144 SER145 VAL146 HIS147 GLU148 LYS149 ILE150 PRO151 TRP152 PRO153 LEU154 PHE155 VAL156 HIS157 TYR158 ALA159 ALA160 SER161 LYS162 GLY163 GLY164 MET165 LYS166 LEU167 MET168 THR169 GLU170 THR171 LEU172 ALA173 LEU174 GLU175 TYR176 ALA177 PRO178 LYS179 GLY180 ILE181 ARG182 VAL183 ASN184 ASN185 ILE186 GLY187 PRO188 GLY189 ALA190 ILE191 ASN192 THR193 PRO194 ILE195 ASN196 ALA197 GLU198 LYS199 PHE200 ALA201 ASP202 PRO203 GLU204 GLN205 ARG206 ALA207 ASP208 VAL209 GLU210 SER211 MET212 ILE213 PRO214 MET215 GLY216 TYR217 ILE218 GLY219 GLU220 PRO221 GLU222 GLU223 ILE224 ALA225 ALA226 VAL227 ALA228 ALA229 TRP230 LEU231 ALA232 SER233 SER234 GLU235 ALA236 SER237 TYR238 VAL239 THR240 GLY241 ILE242 THR243 LEU244 PHE245 ALA246 ASP247 GLY248 GLY249 MET250 THR251 LEU252 TYR253 PRO254 SER255 PHE256 GLN257 ALA258 GLY259 ARG260 GLY261
Unit 3 MET1 TYR2 LYS3 ASP4 LEU5 GLU6 GLY7 LYS8 VAL9 VAL10 VAL11 ILE12 THR13 GLY14 SER15 SER16 THR17 GLY18 LEU19 GLY20 LYS21 SER22 MET23 ALA24 ILE25 ARG26 PHE27 ALA28 THR29 GLU30 LYS31 ALA32 LYS33 VAL34 VAL35 VAL36 ASN37 TYR38 ARG39 SER40 LYS41 GLU42 ASP43 GLU44 ALA45 ASN46 SER47 VAL48 LEU49 GLU50 GLU51 ILE52 LYS53 LYS54 VAL55 GLY56 GLY57 GLU58 ALA59 ILE60 ALA61 VAL62 LYS63 GLY64 ASP65 VAL66 THR67 VAL68 GLU69 SER70 ASP71 VAL72 ILE73 ASN74 LEU75 VAL76 GLN77 SER78 ALA79 ILE80 LYS81 GLU82 PHE83 GLY84 LYS85 LEU86 ASP87 VAL88 MET89 ILE90 ASN91 ASN92 ALA93 GLY94 LEU95 GLU96 ASN97 PRO98 VAL99 SER100 SER101 HIS102 GLU103 MET104 SER105 LEU106 SER107 ASP108 TRP109 ASN110 LYS111 VAL112 ILE113 ASP114 THR115 ASN116 LEU117 THR118 GLY119 ALA120 PHE121 LEU122 GLY123 SER124 ARG125 GLU126 ALA127 ILE128 LYS129 TYR130 PHE131 VAL132 GLU133 ASN134 ASP135 ILE136 LYS137 GLY138 THR139 VAL140 ILE141 ASN142 MET143 SER144 SER145 VAL146 HIS147 GLU148 LYS149 ILE150 PRO151 TRP152 PRO153 LEU154 PHE155 VAL156 HIS157 TYR158 ALA159 ALA160 SER161 LYS162 GLY163 GLY164 MET165 LYS166 LEU167 MET168 THR169 GLU170 THR171 LEU172 ALA173 LEU174 GLU175 TYR176 ALA177 PRO178 LYS179 GLY180 ILE181 ARG182 VAL183 ASN184 ASN185 ILE186 GLY187 PRO188 GLY189 ALA190 ILE191 ASN192 THR193 PRO194 ILE195 ASN196 ALA197 GLU198 LYS199 PHE200 ALA201 ASP202 PRO203 GLU204 GLN205 ARG206 ALA207 ASP208 VAL209 GLU210 SER211 MET212 ILE213 PRO214 MET215 GLY216 TYR217 ILE218 GLY219 GLU220 PRO221 GLU222 GLU223 ILE224 ALA225 ALA226 VAL227 ALA228 ALA229 TRP230 LEU231 ALA232 SER233 SER234 GLU235 ALA236 SER237 TYR238 VAL239 THR240 GLY241 ILE242 THR243 LEU244 PHE245 ALA246 ASP247 GLY248 GLY249 MET250 THR251 LEU252 TYR253 PRO254 SER255 PHE256 GLN257 ALA258 GLY259 ARG260 GLY261
Unit 4 MET1 TYR2 LYS3 ASP4 LEU5 GLU6 GLY7 LYS8 VAL9 VAL10 VAL11 ILE12 THR13 GLY14 SER15 SER16 THR17 GLY18 LEU19 GLY20 LYS21 SER22 MET23 ALA24 ILE25 ARG26 PHE27 ALA28 THR29 GLU30 LYS31 ALA32 LYS33 VAL34 VAL35 VAL36 ASN37 TYR38 ARG39 SER40 LYS41 GLU42 ASP43 GLU44 ALA45 ASN46 SER47 VAL48 LEU49 GLU50 GLU51 ILE52 LYS53 LYS54 VAL55 GLY56 GLY57 GLU58 ALA59 ILE60 ALA61 VAL62 LYS63 GLY64 ASP65 VAL66 THR67 VAL68 GLU69 SER70 ASP71 VAL72 ILE73 ASN74 LEU75 VAL76 GLN77 SER78 ALA79 ILE80 LYS81 GLU82 PHE83 GLY84 LYS85 LEU86 ASP87 VAL88 MET89 ILE90 ASN91 ASN92 ALA93 GLY94 LEU95 GLU96 ASN97 PRO98 VAL99 SER100 SER101 HIS102 GLU103 MET104 SER105 LEU106 SER107 ASP108 TRP109 ASN110 LYS111 VAL112 ILE113 ASP114 THR115 ASN116 LEU117 THR118 GLY119 ALA120 PHE121 LEU122 GLY123 SER124 ARG125 GLU126 ALA127 ILE128 LYS129 TYR130 PHE131 VAL132 GLU133 ASN134 ASP135 ILE136 LYS137 GLY138 THR139 VAL140 ILE141 ASN142 MET143 SER144 SER145 VAL146 HIS147 GLU148 LYS149 ILE150 PRO151 TRP152 PRO153 LEU154 PHE155 VAL156 HIS157 TYR158 ALA159 ALA160 SER161 LYS162 GLY163 GLY164 MET165 LYS166 LEU167 MET168 THR169 GLU170 THR171 LEU172 ALA173 LEU174 GLU175 TYR176 ALA177 PRO178 LYS179 GLY180 ILE181 ARG182 VAL183 ASN184 ASN185 ILE186 GLY187 PRO188 GLY189 ALA190 ILE191 ASN192 THR193 PRO194 ILE195 ASN196 ALA197 GLU198 LYS199 PHE200 ALA201 ASP202 PRO203 GLU204 GLN205 ARG206 ALA207 ASP208 VAL209 GLU210 SER211 MET212 ILE213 PRO214 MET215 GLY216 TYR217 ILE218 GLY219 GLU220 PRO221 GLU222 GLU223 ILE224 ALA225 ALA226 VAL227 ALA228 ALA229 TRP230 LEU231 ALA232 SER233 SER234 GLU235 ALA236 SER237 TYR238 VAL239 THR240 GLY241 ILE242 THR243 LEU244 PHE245 ALA246 ASP247 GLY248 GLY249 MET250 THR251 LEU252 TYR253 PRO254 SER255 PHE256 GLN257 ALA258 GLY259 ARG260 GLY261
Ligands
Unit 5 NAD1262
Unit 6 NAD2262
Unit 7 NAD3262
Unit 8 NAD4262
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany