1GDE - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF PYROCOCCUS PROTEIN A-1 E-FORM
• Keywords: AMINOTRANSFERASE, PYRIDOXAL ENZYME, TEMPERATURE DEPENDENCE O SUBSTRATE RECOGNITION, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1GDE	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ASPARTATE AMINOTRANSFERASE	A	388	3082	0
2	Protein	ASPARTATE AMINOTRANSFERASE	B	388	3082	0
3	Protein	ASPARTATE AMINOTRANSFERASE	A	3	0	35
4	Ligand	ASPARTATE AMINOTRANSFERASE	B	1	0	15
5	Water			330	0	330
total				1110	6164	380

Proteins

Unit 1	ALA 2 LEU 3 SER 4 ASP 5 ARG 6 LEU 7 GLU 8 LEU 9 VAL 10 SER 11 ALA 12 SER 13 GLU 14 ILE 15 ARG 16 LYS 17 LEU 18 PHE 19 ASP 20 ILE 21 ALA 22 ALA 23 GLY 24 MET 25 LYS 26 ASP 27 VAL 28 ILE 29 SER 30 LEU 31 GLY 32 ILE 33 GLY 34 GLU 35 PRO 36 ASP 37 PHE 38 ASP 39 THR 40 PRO 41 GLN 42 HIS 43 ILE 44 LYS 45 GLU 46 TYR 47 ALA 48 LYS 49 GLU 50 ALA 51 LEU 52 ASP 53 LYS 54 GLY 55 LEU 56 THR 57 HIS 58 TYR 59 GLY 60 PRO 61 ASN 62 ILE 63 GLY 64 LEU 65 LEU 66 GLU 67 LEU 68 ARG 69 GLU 70 ALA 71 ILE 72 ALA 73 GLU 74 LYS 75 LEU 76 LYS 77 LYS 78 GLN 79 ASN 80 GLY 81 ILE 82 GLU 83 ALA 84 ASP 85 PRO 86 LYS 87 THR 88 GLU 89 ILE 90 MET 91 VAL 92 LEU 93 LEU 94 GLY 95 ALA 96 ASN 97 GLN 98 ALA 99 PHE 100 LEU 101 MET 102 GLY 103 LEU 104 SER 105 ALA 106 PHE 107 LEU 108 LYS 109 ASP 110 GLY 111 GLU 112 GLU 113 VAL 114 LEU 115 ILE 116 PRO 117 THR 118 PRO 119 ALA 120 PHE 121 VAL 122 SER 123 TYR 124 ALA 125 PRO 126 ALA 127 VAL 128 ILE 129 LEU 130 ALA 131 GLY 132 GLY 133 LYS 134 PRO 135 VAL 136 GLU 137 VAL 138 PRO 139 THR 140 TYR 141 GLU 142 GLU 143 ASP 144 GLU 145 PHE 146 ARG 147 LEU 148 ASN 149 VAL 150 ASP 151 GLU 152 LEU 153 LYS 154 LYS 155 TYR 156 VAL 157 THR 158 ASP 159 LYS 160 THR 161 ARG 162 ALA 163 LEU 164 ILE 165 ILE 166 ASN 167 SER 168 PRO 169 CYS 170 ASN 171 PRO 172 THR 173 GLY 174 ALA 175 VAL 176 LEU 177 THR 178 LYS 179 LYS 180 ASP 181 LEU 182 GLU 183 GLU 184 ILE 185 ALA 186 ASP 187 PHE 188 VAL 189 VAL 190 GLU 191 HIS 192 ASP 193 LEU 194 ILE 195 VAL 196 ILE 197 SER 198 ASP 199 GLU 200 VAL 201 TYR 202 GLU 203 HIS 204 PHE 205 ILE 206 TYR 207 ASP 208 ASP 209 ALA 210 ARG 211 HIS 212 TYR 213 SER 214 ILE 215 ALA 216 SER 217 LEU 218 ASP 219 GLY 220 MET 221 PHE 222 GLU 223 ARG 224 THR 225 ILE 226 THR 227 VAL 228 ASN 229 GLY 230 PHE 231 SER 232 LYS 233 THR 234 PHE 235 ALA 236 MET 237 THR 238 GLY 239 TRP 240 ARG 241 LEU 242 GLY 243 PHE 244 VAL 245 ALA 246 ALA 247 PRO 248 SER 249 TRP 250 ILE 251 ILE 252 GLU 253 ARG 254 MET 255 VAL 256 LYS 257 PHE 258 GLN 259 MET 260 TYR 261 ASN 262 ALA 263 THR 264 CYS 265 PRO 266 VAL 267 THR 268 PHE 269 ILE 270 GLN 271 TYR 272 ALA 273 ALA 274 ALA 275 LYS 276 ALA 277 LEU 278 LYS 279 ASP 280 GLU 281 ARG 282 SER 283 TRP 284 LYS 285 ALA 286 VAL 287 GLU 288 GLU 289 MET 290 ARG 291 LYS 292 GLU 293 TYR 294 ASP 295 ARG 296 ARG 297 ARG 298 LYS 299 LEU 300 VAL 301 TRP 302 LYS 303 ARG 304 LEU 305 ASN 306 GLU 307 MET 308 GLY 309 LEU 310 PRO 311 THR 312 VAL 313 LYS 314 PRO 315 LYS 316 GLY 317 ALA 318 PHE 319 TYR 320 ILE 321 PHE 322 PRO 323 ARG 324 ILE 325 ARG 326 ASP 327 THR 328 GLY 329 LEU 330 THR 331 SER 332 LYS 333 LYS 334 PHE 335 SER 336 GLU 337 LEU 338 MET 339 LEU 340 LYS 341 GLU 342 ALA 343 ARG 344 VAL 345 ALA 346 VAL 347 VAL 348 PRO 349 GLY 350 SER 351 ALA 352 PHE 353 GLY 354 LYS 355 ALA 356 GLY 357 GLU 358 GLY 359 TYR 360 VAL 361 ARG 362 ILE 363 SER 364 TYR 365 ALA 366 THR 367 ALA 368 TYR 369 GLU 370 LYS 371 LEU 372 GLU 373 GLU 374 ALA 375 MET 376 ASP 377 ARG 378 MET 379 GLU 380 ARG 381 VAL 382 LEU 383 LYS 384 GLU 385 ARG 386 LYS 387 LEU 388 VAL 389
Unit 2	ALA 502 LEU 503 SER 504 ASP 505 ARG 506 LEU 507 GLU 508 LEU 509 VAL 510 SER 511 ALA 512 SER 513 GLU 514 ILE 515 ARG 516 LYS 517 LEU 518 PHE 519 ASP 520 ILE 521 ALA 522 ALA 523 GLY 524 MET 525 LYS 526 ASP 527 VAL 528 ILE 529 SER 530 LEU 531 GLY 532 ILE 533 GLY 534 GLU 535 PRO 536 ASP 537 PHE 538 ASP 539 THR 540 PRO 541 GLN 542 HIS 543 ILE 544 LYS 545 GLU 546 TYR 547 ALA 548 LYS 549 GLU 550 ALA 551 LEU 552 ASP 553 LYS 554 GLY 555 LEU 556 THR 557 HIS 558 TYR 559 GLY 560 PRO 561 ASN 562 ILE 563 GLY 564 LEU 565 LEU 566 GLU 567 LEU 568 ARG 569 GLU 570 ALA 571 ILE 572 ALA 573 GLU 574 LYS 575 LEU 576 LYS 577 LYS 578 GLN 579 ASN 580 GLY 581 ILE 582 GLU 583 ALA 584 ASP 585 PRO 586 LYS 587 THR 588 GLU 589 ILE 590 MET 591 VAL 592 LEU 593 LEU 594 GLY 595 ALA 596 ASN 597 GLN 598 ALA 599 PHE 600 LEU 601 MET 602 GLY 603 LEU 604 SER 605 ALA 606 PHE 607 LEU 608 LYS 609 ASP 610 GLY 611 GLU 612 GLU 613 VAL 614 LEU 615 ILE 616 PRO 617 THR 618 PRO 619 ALA 620 PHE 621 VAL 622 SER 623 TYR 624 ALA 625 PRO 626 ALA 627 VAL 628 ILE 629 LEU 630 ALA 631 GLY 632 GLY 633 LYS 634 PRO 635 VAL 636 GLU 637 VAL 638 PRO 639 THR 640 TYR 641 GLU 642 GLU 643 ASP 644 GLU 645 PHE 646 ARG 647 LEU 648 ASN 649 VAL 650 ASP 651 GLU 652 LEU 653 LYS 654 LYS 655 TYR 656 VAL 657 THR 658 ASP 659 LYS 660 THR 661 ARG 662 ALA 663 LEU 664 ILE 665 ILE 666 ASN 667 SER 668 PRO 669 CYS 670 ASN 671 PRO 672 THR 673 GLY 674 ALA 675 VAL 676 LEU 677 THR 678 LYS 679 LYS 680 ASP 681 LEU 682 GLU 683 GLU 684 ILE 685 ALA 686 ASP 687 PHE 688 VAL 689 VAL 690 GLU 691 HIS 692 ASP 693 LEU 694 ILE 695 VAL 696 ILE 697 SER 698 ASP 699 GLU 700 VAL 701 TYR 702 GLU 703 HIS 704 PHE 705 ILE 706 TYR 707 ASP 708 ASP 709 ALA 710 ARG 711 HIS 712 TYR 713 SER 714 ILE 715 ALA 716 SER 717 LEU 718 ASP 719 GLY 720 MET 721 PHE 722 GLU 723 ARG 724 THR 725 ILE 726 THR 727 VAL 728 ASN 729 GLY 730 PHE 731 SER 732 LYS 733 THR 734 PHE 735 ALA 736 MET 737 THR 738 GLY 739 TRP 740 ARG 741 LEU 742 GLY 743 PHE 744 VAL 745 ALA 746 ALA 747 PRO 748 SER 749 TRP 750 ILE 751 ILE 752 GLU 753 ARG 754 MET 755 VAL 756 LYS 757 PHE 758 GLN 759 MET 760 TYR 761 ASN 762 ALA 763 THR 764 CYS 765 PRO 766 VAL 767 THR 768 PHE 769 ILE 770 GLN 771 TYR 772 ALA 773 ALA 774 ALA 775 LYS 776 ALA 777 LEU 778 LYS 779 ASP 780 GLU 781 ARG 782 SER 783 TRP 784 LYS 785 ALA 786 VAL 787 GLU 788 GLU 789 MET 790 ARG 791 LYS 792 GLU 793 TYR 794 ASP 795 ARG 796 ARG 797 ARG 798 LYS 799 LEU 800 VAL 801 TRP 802 LYS 803 ARG 804 LEU 805 ASN 806 GLU 807 MET 808 GLY 809 LEU 810 PRO 811 THR 812 VAL 813 LYS 814 PRO 815 LYS 816 GLY 817 ALA 818 PHE 819 TYR 820 ILE 821 PHE 822 PRO 823 ARG 824 ILE 825 ARG 826 ASP 827 THR 828 GLY 829 LEU 830 THR 831 SER 832 LYS 833 LYS 834 PHE 835 SER 836 GLU 837 LEU 838 MET 839 LEU 840 LYS 841 GLU 842 ALA 843 ARG 844 VAL 845 ALA 846 VAL 847 VAL 848 PRO 849 GLY 850 SER 851 ALA 852 PHE 853 GLY 854 LYS 855 ALA 856 GLY 857 GLU 858 GLY 859 TYR 860 VAL 861 ARG 862 ILE 863 SER 864 TYR 865 ALA 866 THR 867 ALA 868 TYR 869 GLU 870 LYS 871 LEU 872 GLU 873 GLU 874 ALA 875 MET 876 ASP 877 ARG 878 MET 879 GLU 880 ARG 881 VAL 882 LEU 883 LYS 884 GLU 885 ARG 886 LYS 887 LEU 888 VAL 889
Unit 3	PLP 413 GLU 414 GLU 914

Ligands

Unit 4

PLP 913