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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF THE 58KD VEGETATIVE LECTIN FROM THE LEGUME DOLICHOS BIFLORUS
Keywords JELLY ROLL FOLD, LECTIN, SUGAR BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1G7Y     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   STEM/LEAF LECTIN DB58  A 251 1847 0
2  Protein   STEM/LEAF LECTIN DB58  B 246 1823 0
3  Protein   STEM/LEAF LECTIN DB58  C 251 1851 0
4  Protein   STEM/LEAF LECTIN DB58  D 253 1866 0
5  Protein   STEM/LEAF LECTIN DB58  E 249 1833 0
6  Protein   STEM/LEAF LECTIN DB58  F 246 1824 0
7  Ligand    G 3 0 38
8  Ligand    H 3 0 38
9  Ligand    I 3 0 38
10  Ligand   STEM/LEAF LECTIN DB58  A 2 0 2
11  Ligand   STEM/LEAF LECTIN DB58  B 2 0 2
12  Ligand   STEM/LEAF LECTIN DB58  C 2 0 2
13  Ligand   STEM/LEAF LECTIN DB58  D 2 0 2
14  Ligand   STEM/LEAF LECTIN DB58  E 2 0 2
15  Ligand   STEM/LEAF LECTIN DB58  F 2 0 2
16 Water     41 0 41
total       1558 11044 167
Proteins
Unit 1 ALA1 ASP2 ILE3 GLN4 SER5 PHE6 SER7 PHE8 LYS9 ASN10 PHE11 ASN12 SER13 SER14 SER15 PHE16 ILE17 LEU18 GLN19 GLY20 ASP21 ALA22 THR23 VAL24 SER25 SER26 SER27 LYS28 LEU29 ARG30 LEU31 THR32 LYS33 VAL34 LYS35 GLY36 ASN37 GLY38 LEU39 PRO40 THR41 LEU42 SER43 SER44 LEU45 GLY46 ARG47 ALA48 PHE49 TYR50 SER51 SER52 PRO53 ILE54 GLN55 ILE56 TYR57 ASP58 LYS59 SER60 THR61 GLY62 ALA63 VAL64 ALA65 SER66 TRP67 ALA68 THR69 SER70 PHE71 THR72 ALA73 ASN74 ILE75 PHE76 ALA77 PRO78 ASN79 LYS80 SER81 SER82 SER83 ALA84 ASP85 GLY86 ILE87 ALA88 PHE89 ALA90 LEU91 VAL92 PRO93 VAL94 GLY95 SER96 GLU97 PRO98 LYS99 SER100 ASN101 SER102 GLY103 PHE104 LEU105 GLY106 VAL107 PHE108 ASP109 SER110 ASP111 VAL112 TYR113 ASP114 ASN115 SER116 ALA117 GLN118 THR119 VAL120 ALA121 VAL122 GLU123 PHE124 ASP125 THR126 PHE127 SER128 ASN129 THR130 ASP131 TRP132 ASP133 PRO134 THR135 SER136 ARG137 HIS138 ILE139 GLY140 ILE141 ASP142 VAL143 ASN144 SER145 ILE146 LYS147 SER148 ILE149 ARG150 THR151 ALA152 SER153 TRP154 GLY155 LEU156 ALA157 ASN158 GLY159 GLN160 ASN161 ALA162 GLU163 ILE164 LEU165 ILE166 THR167 TYR168 ASN169 ALA170 ALA171 THR172 SER173 LEU174 LEU175 VAL176 ALA177 SER178 LEU179 VAL180 HIS181 PRO182 SER183 ARG184 ARG185 THR186 SER187 TYR188 ILE189 VAL190 SER191 GLU192 ARG193 VAL194 ASP195 ILE196 THR197 ASN198 GLU199 LEU200 PRO201 GLU202 TYR203 VAL204 SER205 ILE206 GLY207 PHE208 SER209 ALA210 THR211 THR212 GLY213 LEU214 SER215 GLU216 GLY217 TYR218 THR219 GLU220 THR221 HIS222 ASP223 VAL224 LEU225 SER226 TRP227 SER228 PHE229 ALA230 SER231 LYS232 LEU233 PRO234 ASP235 ASP236 SER237 GLU240 PRO241 LEU242 ASP243 ILE244 ALA245 SER246 TYR247 LEU248 VAL249 ARG250 ASN251 VAL252 LEU253
Unit 2 ALA1 ASP2 ILE3 GLN4 SER5 PHE6 SER7 PHE8 LYS9 ASN10 PHE11 ASN12 SER13 SER14 SER15 PHE16 ILE17 LEU18 GLN19 GLY20 ASP21 ALA22 THR23 VAL24 SER25 SER26 SER27 LYS28 LEU29 ARG30 LEU31 THR32 LYS33 VAL34 LYS35 GLY36 ASN37 GLY38 LEU39 PRO40 THR41 LEU42 SER43 SER44 LEU45 GLY46 ARG47 ALA48 PHE49 TYR50 SER51 SER52 PRO53 ILE54 GLN55 ILE56 TYR57 ASP58 LYS59 SER60 THR61 GLY62 ALA63 VAL64 ALA65 SER66 TRP67 ALA68 THR69 SER70 PHE71 THR72 ALA73 ASN74 ILE75 PHE76 ALA77 PRO78 ASN79 LYS80 SER81 SER82 SER83 ALA84 ASP85 GLY86 ILE87 ALA88 PHE89 ALA90 LEU91 VAL92 PRO93 VAL94 GLY95 SER96 GLU97 PRO98 LYS99 SER100 ASN101 SER102 GLY103 PHE104 LEU105 GLY106 VAL107 PHE108 ASP109 SER110 ASP111 VAL112 TYR113 ASP114 ASN115 SER116 ALA117 GLN118 THR119 VAL120 ALA121 VAL122 GLU123 PHE124 ASP125 THR126 PHE127 SER128 ASN129 THR130 ASP131 TRP132 ASP133 PRO134 THR135 SER136 ARG137 HIS138 ILE139 GLY140 ILE141 ASP142 VAL143 ASN144 SER145 ILE146 LYS147 SER148 ILE149 ARG150 THR151 ALA152 SER153 TRP154 GLY155 LEU156 ALA157 ASN158 GLY159 GLN160 ASN161 ALA162 GLU163 ILE164 LEU165 ILE166 THR167 TYR168 ASN169 ALA170 ALA171 THR172 SER173 LEU174 LEU175 VAL176 ALA177 SER178 LEU179 VAL180 HIS181 PRO182 SER183 ARG184 ARG185 THR186 SER187 TYR188 ILE189 VAL190 SER191 GLU192 ARG193 VAL194 ASP195 ILE196 THR197 ASN198 GLU199 LEU200 PRO201 GLU202 TYR203 VAL204 SER205 ILE206 GLY207 PHE208 SER209 ALA210 THR211 THR212 GLY213 LEU214 SER215 GLU216 GLY217 TYR218 THR219 GLU220 THR221 HIS222 ASP223 VAL224 LEU225 SER226 TRP227 SER228 PHE229 ALA230 SER231 LYS232 LEU233 PRO234 LEU242 ASP243 ILE244 ALA245 SER246 TYR247 LEU248 VAL249 ARG250 ASN251 VAL252 LEU253
Unit 3 ALA1 ASP2 ILE3 GLN4 SER5 PHE6 SER7 PHE8 LYS9 ASN10 PHE11 ASN12 SER13 SER14 SER15 PHE16 ILE17 LEU18 GLN19 GLY20 ASP21 ALA22 THR23 VAL24 SER25 SER26 SER27 LYS28 LEU29 ARG30 LEU31 THR32 LYS33 VAL34 LYS35 GLY36 ASN37 GLY38 LEU39 PRO40 THR41 LEU42 SER43 SER44 LEU45 GLY46 ARG47 ALA48 PHE49 TYR50 SER51 SER52 PRO53 ILE54 GLN55 ILE56 TYR57 ASP58 LYS59 SER60 THR61 GLY62 ALA63 VAL64 ALA65 SER66 TRP67 ALA68 THR69 SER70 PHE71 THR72 ALA73 ASN74 ILE75 PHE76 ALA77 PRO78 ASN79 LYS80 SER81 SER82 SER83 ALA84 ASP85 GLY86 ILE87 ALA88 PHE89 ALA90 LEU91 VAL92 PRO93 VAL94 GLY95 SER96 GLU97 PRO98 LYS99 SER100 ASN101 SER102 GLY103 PHE104 LEU105 GLY106 VAL107 PHE108 ASP109 SER110 ASP111 VAL112 TYR113 ASP114 ASN115 SER116 ALA117 GLN118 THR119 VAL120 ALA121 VAL122 GLU123 PHE124 ASP125 THR126 PHE127 SER128 ASN129 THR130 ASP131 TRP132 ASP133 PRO134 THR135 SER136 ARG137 HIS138 ILE139 GLY140 ILE141 ASP142 VAL143 ASN144 SER145 ILE146 LYS147 SER148 ILE149 ARG150 THR151 ALA152 SER153 TRP154 GLY155 LEU156 ALA157 ASN158 GLY159 GLN160 ASN161 ALA162 GLU163 ILE164 LEU165 ILE166 THR167 TYR168 ASN169 ALA170 ALA171 THR172 SER173 LEU174 LEU175 VAL176 ALA177 SER178 LEU179 VAL180 HIS181 PRO182 SER183 ARG184 ARG185 THR186 SER187 TYR188 ILE189 VAL190 SER191 GLU192 ARG193 VAL194 ASP195 ILE196 THR197 ASN198 GLU199 LEU200 PRO201 GLU202 TYR203 VAL204 SER205 ILE206 GLY207 PHE208 SER209 ALA210 THR211 THR212 GLY213 LEU214 SER215 GLU216 GLY217 TYR218 THR219 GLU220 THR221 HIS222 ASP223 VAL224 LEU225 SER226 TRP227 SER228 PHE229 ALA230 SER231 LYS232 LEU233 PRO234 ASP235 ASP236 SER237 GLU240 PRO241 LEU242 ASP243 ILE244 ALA245 SER246 TYR247 LEU248 VAL249 ARG250 ASN251 VAL252 LEU253
Unit 4 ALA1 ASP2 ILE3 GLN4 SER5 PHE6 SER7 PHE8 LYS9 ASN10 PHE11 ASN12 SER13 SER14 SER15 PHE16 ILE17 LEU18 GLN19 GLY20 ASP21 ALA22 THR23 VAL24 SER25 SER26 SER27 LYS28 LEU29 ARG30 LEU31 THR32 LYS33 VAL34 LYS35 GLY36 ASN37 GLY38 LEU39 PRO40 THR41 LEU42 SER43 SER44 LEU45 GLY46 ARG47 ALA48 PHE49 TYR50 SER51 SER52 PRO53 ILE54 GLN55 ILE56 TYR57 ASP58 LYS59 SER60 THR61 GLY62 ALA63 VAL64 ALA65 SER66 TRP67 ALA68 THR69 SER70 PHE71 THR72 ALA73 ASN74 ILE75 PHE76 ALA77 PRO78 ASN79 LYS80 SER81 SER82 SER83 ALA84 ASP85 GLY86 ILE87 ALA88 PHE89 ALA90 LEU91 VAL92 PRO93 VAL94 GLY95 SER96 GLU97 PRO98 LYS99 SER100 ASN101 SER102 GLY103 PHE104 LEU105 GLY106 VAL107 PHE108 ASP109 SER110 ASP111 VAL112 TYR113 ASP114 ASN115 SER116 ALA117 GLN118 THR119 VAL120 ALA121 VAL122 GLU123 PHE124 ASP125 THR126 PHE127 SER128 ASN129 THR130 ASP131 TRP132 ASP133 PRO134 THR135 SER136 ARG137 HIS138 ILE139 GLY140 ILE141 ASP142 VAL143 ASN144 SER145 ILE146 LYS147 SER148 ILE149 ARG150 THR151 ALA152 SER153 TRP154 GLY155 LEU156 ALA157 ASN158 GLY159 GLN160 ASN161 ALA162 GLU163 ILE164 LEU165 ILE166 THR167 TYR168 ASN169 ALA170 ALA171 THR172 SER173 LEU174 LEU175 VAL176 ALA177 SER178 LEU179 VAL180 HIS181 PRO182 SER183 ARG184 ARG185 THR186 SER187 TYR188 ILE189 VAL190 SER191 GLU192 ARG193 VAL194 ASP195 ILE196 THR197 ASN198 GLU199 LEU200 PRO201 GLU202 TYR203 VAL204 SER205 ILE206 GLY207 PHE208 SER209 ALA210 THR211 THR212 GLY213 LEU214 SER215 GLU216 GLY217 TYR218 THR219 GLU220 THR221 HIS222 ASP223 VAL224 LEU225 SER226 TRP227 SER228 PHE229 ALA230 SER231 LYS232 LEU233 PRO234 ASP235 ASP236 SER237 THR238 THR239 GLU240 PRO241 LEU242 ASP243 ILE244 ALA245 SER246 TYR247 LEU248 VAL249 ARG250 ASN251 VAL252 LEU253
Unit 5 ALA1 ASP2 ILE3 GLN4 SER5 PHE6 SER7 PHE8 LYS9 ASN10 PHE11 ASN12 SER13 SER14 SER15 PHE16 ILE17 LEU18 GLN19 GLY20 ASP21 ALA22 THR23 VAL24 SER25 SER26 SER27 LYS28 LEU29 ARG30 LEU31 THR32 LYS33 VAL34 LYS35 GLY36 ASN37 GLY38 LEU39 PRO40 THR41 LEU42 SER43 SER44 LEU45 GLY46 ARG47 ALA48 PHE49 TYR50 SER51 SER52 PRO53 ILE54 GLN55 ILE56 TYR57 ASP58 LYS59 SER60 THR61 GLY62 ALA63 VAL64 ALA65 SER66 TRP67 ALA68 THR69 SER70 PHE71 THR72 ALA73 ASN74 ILE75 PHE76 ALA77 PRO78 ASN79 LYS80 SER81 SER82 SER83 ALA84 ASP85 GLY86 ILE87 ALA88 PHE89 ALA90 LEU91 VAL92 PRO93 VAL94 GLY95 SER96 GLU97 PRO98 LYS99 SER100 ASN101 SER102 GLY103 PHE104 LEU105 GLY106 VAL107 PHE108 ASP109 SER110 ASP111 VAL112 TYR113 ASP114 ASN115 SER116 ALA117 GLN118 THR119 VAL120 ALA121 VAL122 GLU123 PHE124 ASP125 THR126 PHE127 SER128 ASN129 THR130 ASP131 TRP132 ASP133 PRO134 THR135 SER136 ARG137 HIS138 ILE139 GLY140 ILE141 ASP142 VAL143 ASN144 SER145 ILE146 LYS147 SER148 ILE149 ARG150 THR151 ALA152 SER153 TRP154 GLY155 LEU156 ALA157 ASN158 GLY159 GLN160 ASN161 ALA162 GLU163 ILE164 LEU165 ILE166 THR167 TYR168 ASN169 ALA170 ALA171 THR172 SER173 LEU174 LEU175 VAL176 ALA177 SER178 LEU179 VAL180 HIS181 PRO182 SER183 ARG184 ARG185 THR186 SER187 TYR188 ILE189 VAL190 SER191 GLU192 ARG193 VAL194 ASP195 ILE196 THR197 ASN198 GLU199 LEU200 PRO201 GLU202 TYR203 VAL204 SER205 ILE206 GLY207 PHE208 SER209 ALA210 THR211 THR212 GLY213 LEU214 SER215 GLU216 GLY217 TYR218 THR219 GLU220 THR221 HIS222 ASP223 VAL224 LEU225 SER226 TRP227 SER228 PHE229 ALA230 SER231 LYS232 LEU233 PRO234 ASP235 ASP236 SER237 LEU242 ASP243 ILE244 ALA245 SER246 TYR247 LEU248 VAL249 ARG250 ASN251 VAL252 LEU253
Unit 6 ALA1 ASP2 ILE3 GLN4 SER5 PHE6 SER7 PHE8 LYS9 ASN10 PHE11 ASN12 SER13 SER14 SER15 PHE16 ILE17 LEU18 GLN19 GLY20 ASP21 ALA22 THR23 VAL24 SER25 SER26 SER27 LYS28 LEU29 ARG30 LEU31 THR32 LYS33 VAL34 LYS35 GLY36 ASN37 GLY38 LEU39 PRO40 THR41 LEU42 SER43 SER44 LEU45 GLY46 ARG47 ALA48 PHE49 TYR50 SER51 SER52 PRO53 ILE54 GLN55 ILE56 TYR57 ASP58 LYS59 SER60 THR61 GLY62 ALA63 VAL64 ALA65 SER66 TRP67 ALA68 THR69 SER70 PHE71 THR72 ALA73 ASN74 ILE75 PHE76 ALA77 PRO78 ASN79 LYS80 SER81 SER82 SER83 ALA84 ASP85 GLY86 ILE87 ALA88 PHE89 ALA90 LEU91 VAL92 PRO93 VAL94 GLY95 SER96 GLU97 PRO98 LYS99 SER100 ASN101 SER102 GLY103 PHE104 LEU105 GLY106 VAL107 PHE108 ASP109 SER110 ASP111 VAL112 TYR113 ASP114 ASN115 SER116 ALA117 GLN118 THR119 VAL120 ALA121 VAL122 GLU123 PHE124 ASP125 THR126 PHE127 SER128 ASN129 THR130 ASP131 TRP132 ASP133 PRO134 THR135 SER136 ARG137 HIS138 ILE139 GLY140 ILE141 ASP142 VAL143 ASN144 SER145 ILE146 LYS147 SER148 ILE149 ARG150 THR151 ALA152 SER153 TRP154 GLY155 LEU156 ALA157 ASN158 GLY159 GLN160 ASN161 ALA162 GLU163 ILE164 LEU165 ILE166 THR167 TYR168 ASN169 ALA170 ALA171 THR172 SER173 LEU174 LEU175 VAL176 ALA177 SER178 LEU179 VAL180 HIS181 PRO182 SER183 ARG184 ARG185 THR186 SER187 TYR188 ILE189 VAL190 SER191 GLU192 ARG193 VAL194 ASP195 ILE196 THR197 ASN198 GLU199 LEU200 PRO201 GLU202 TYR203 VAL204 SER205 ILE206 GLY207 PHE208 SER209 ALA210 THR211 THR212 GLY213 LEU214 SER215 GLU216 GLY217 TYR218 THR219 GLU220 THR221 HIS222 ASP223 VAL224 LEU225 SER226 TRP227 SER228 PHE229 ALA230 SER231 LYS232 LEU233 PRO234 LEU242 ASP243 ILE244 ALA245 SER246 TYR247 LEU248 VAL249 ARG250 ASN251 VAL252 LEU253
Ligands
Unit 7 NAG1 FUC2 NAG3
Unit 8 NAG1 FUL2 NAG3
Unit 9 NAG1 FUC2 NAG3
Unit 10 CA254 MN257
Unit 11 CA254 MN257
Unit 12 CA254 MN257
Unit 13 CA254 MN257
Unit 14 CA254 MN257
Unit 15 CA254 MN257
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany