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Sequence, Chains, Asymmetric and Biological Units

Title A FUNCTIONAL HOT SPOT FOR ANTIGEN RECOGNITION IN A SUPERAGON TCR/MHC COMPLEX
Keywords T CELL ANTIGEN RECEPTOR, MAJOR HISTOCOMPATIBILITY COMPLEX, SUPERAGONIST, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1G6R     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ALPHA T CELL RECEPTOR  A 202 1570 0
2  Protein   BETA T CELL RECEPTOR  B 237 1853 0
3  Protein    H 274 2232 0
4  Protein   BETA-2 MICROGLOBULIN  L 99 821 0
5  Protein   SIYR PEPTIDE  P 8 74 0
6  Protein   ALPHA T CELL RECEPTOR  C 202 1570 0
7  Protein   BETA T CELL RECEPTOR  D 237 1853 0
8  Protein    I 274 2232 0
9  Protein   BETA-2 MICROGLOBULIN  M 99 821 0
10  Protein   SIYR PEPTIDE  Q 8 74 0
total       1640 13100 0

Proteins
Unit 1 GLN1 SER2 VAL3 THR4 GLN5 PRO6 ASP7 ALA8 ARG9 VAL10 THR11 VAL12 SER13 GLU14 GLY15 ALA16 SER17 LEU18 GLN19 LEU20 ARG21 CYS22 LYS23 TYR24 SER25 TYR26 SER27 ALA28 THR29 PRO30 TYR31 LEU32 PHE33 TRP34 TYR35 VAL36 GLN37 TYR38 PRO39 ARG40 GLN41 GLY42 LEU43 GLN44 LEU45 LEU46 LEU47 LYS48 TYR49 TYR50 SER51 GLY52 ASP53 PRO54 VAL55 VAL56 GLN57 GLY58 VAL59 ASN60 GLY61 PHE62 GLU63 ALA64 GLU65 PHE66 SER67 LYS68 SER69 ASN70 SER71 SER72 PHE73 HIS74 LEU75 ARG76 LYS77 ALA78 SER79 VAL80 HIS81 TRP82 SER83 ASP84 SER85 ALA86 VAL87 TYR88 PHE89 CYS90 ALA91 VAL92 SER93 GLY99 PHE100 ALA101 SER102 ALA103 LEU104 THR105 PHE106 GLY107 SER108 GLY109 THR110 LYS111 VAL112 ILE113 VAL114 LEU115 PRO116 TYR117 ILE118 GLN119 ASN120 PRO121 GLU122 PRO123 ALA124 VAL125 TYR126 ALA127 LEU128 LYS129 ASP132 PRO133 ARG134 SER135 GLN136 ASP137 SER138 THR139 LEU140 CYS141 LEU142 PHE143 THR144 ASP145 PHE146 ASP147 SER148 GLN149 ILE150 ASN151 VAL152 PRO153 LYS154 THR155 MET156 GLU157 SER158 GLY159 THR160 PHE161 ILE162 THR163 ASP164 ALA165 THR166 VAL167 LEU168 ASP169 MET170 LYS171 ALA172 MET173 ASP174 SER175 LYS176 SER177 ASN178 GLY179 ALA180 ILE181 ALA182 TRP183 SER184 ASN185 GLN186 THR187 SER188 PHE189 THR190 CYS191 GLN192 ASP193 ILE194 PHE195 LYS196 GLU197 THR198 ASN203 ALA204 THR205 TYR206 PRO207 SER208 SER209 ASP210 VAL211 PRO212 CYS213
Unit 2 GLU1 ALA2 ALA3 VAL4 THR5 GLN6 SER7 PRO8 ARG9 ASN10 LYS11 VAL12 ALA13 VAL14 THR15 GLY16 GLY17 LYS18 VAL19 THR20 LEU21 SER22 CYS23 ASN24 GLN25 THR26 ASN27 ASN28 HIS29 ASN30 ASN31 MET32 TYR33 TRP34 TYR35 ARG36 GLN37 ASP38 THR39 GLY40 HIS41 GLY42 LEU43 ARG44 LEU45 ILE46 HIS47 TYR48 SER49 TYR50 GLY51 ALA52 GLY53 SER54 THR55 GLU56 LYS57 GLY58 ASP59 ILE60 PRO61 ASP62 GLY63 TYR65 LYS66 ALA67 SER68 ARG69 PRO70 SER71 GLN72 GLU73 ASN74 PHE75 SER76 LEU77 ILE78 LEU79 GLU80 LEU81 ALA82 THR83 PRO84 SER85 GLN86 THR87 SER88 VAL89 TYR90 PHE91 CYS92 ALA93 SER94 GLY95 GLY96 GLY97 GLY98 THR105 LEU106 TYR107 PHE108 GLY109 ALA110 GLY111 THR112 ARG113 LEU114 SER115 VAL116 GLU117 ASP118 LEU119 ARG120 ASN121 VAL122 THR123 PRO124 PRO125 LYS126 VAL127 SER128 LEU129 PHE130 GLU131 PRO132 SER133 LYS134 ALA135 GLU136 ILE137 ALA138 ASN139 LYS140 GLN141 LYS142 ALA143 THR144 LEU145 VAL146 CYS147 LEU148 ALA149 ARG150 GLY151 PHE152 PHE153 PRO154 ASP155 HIS156 VAL157 GLU158 LEU159 SER160 TRP161 TRP162 VAL163 ASN164 GLY165 LYS166 GLU167 VAL168 HIS169 SER170 GLY171 VAL172 SER173 THR174 ASP175 PRO176 GLN177 ALA178 TYR179 LYS180 GLU181 SER182 ASN186 TYR187 SER189 TYR190 CYS191 LEU192 SER193 SER194 ARG195 LEU196 ARG197 VAL198 SER199 ALA200 THR201 PHE202 TRP203 HIS204 ASN205 PRO206 ARG207 ASN208 HIS209 PHE210 ARG211 CYS212 GLN213 VAL214 GLN215 PHE216 HIS217 GLY218 LEU219 SER220 GLU221 GLU222 ASP223 LYS224 TRP225 PRO226 GLU227 GLY228 SER229 PRO230 LYS231 PRO232 VAL233 THR234 GLN235 ASN236 ILE237 SER238 ALA239 GLU240 ALA241 TRP242 GLY243 ARG244 ALA245 ASP246 CYS247 LEU316
Unit 3 GLY1 PRO2 HIS3 SER4 LEU5 ARG6 TYR7 PHE8 VAL9 THR10 ALA11 VAL12 SER13 ARG14 PRO15 GLY16 LEU17 GLY18 GLU19 PRO20 ARG21 TYR22 MET23 GLU24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLU32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 GLU41 ASN42 PRO43 ARG44 TYR45 GLU46 PRO47 ARG48 ALA49 ARG50 TRP51 MET52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 GLU61 ARG62 GLU63 THR64 GLN65 LYS66 ALA67 LYS68 GLY69 ASN70 GLU71 GLN72 SER73 PHE74 ARG75 VAL76 ASP77 LEU78 ARG79 THR80 LEU81 LEU82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 LYS89 GLY90 GLY91 SER92 HIS93 THR94 ILE95 GLN96 VAL97 ILE98 SER99 GLY100 CYS101 GLU102 VAL103 GLY104 SER105 ASP106 GLY107 ARG108 LEU109 LEU110 ARG111 GLY112 TYR113 GLN114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 CYS121 ASP122 TYR123 ILE124 ALA125 LEU126 ASN127 GLU128 ASP129 LEU130 LYS131 THR132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 LEU141 ILE142 THR143 LYS144 HIS145 LYS146 TRP147 GLU148 GLN149 ALA150 GLY151 GLU152 ALA153 GLU154 ARG155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 LYS173 ASN174 GLY175 ASN176 ALA177 THR178 LEU179 LEU180 ARG181 THR182 ASP183 SER184 PRO185 LYS186 ALA187 HIS188 VAL189 THR190 HIS191 HIS192 SER193 ARG194 PRO195 GLU196 ASP197 LYS198 VAL199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 ASP212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 LEU219 ASN220 GLY221 GLU222 GLU223 LEU224 ILE225 GLN226 ASP227 MET228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 SER246 VAL247 VAL248 VAL249 PRO250 LEU251 GLY252 LYS253 GLU254 GLN255 TYR256 TYR257 THR258 CYS259 HIS260 VAL261 TYR262 HIS263 GLN264 GLY265 LEU266 PRO267 GLU268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274
Unit 4 ILE1 GLN2 LYS3 THR4 PRO5 GLN6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 PRO15 GLU16 ASN17 GLY18 LYS19 PRO20 ASN21 ILE22 LEU23 ASN24 CYS25 TYR26 VAL27 THR28 GLN29 PHE30 HIS31 PRO32 PRO33 HIS34 ILE35 GLU36 ILE37 GLN38 MET39 LEU40 LYS41 ASN42 GLY43 LYS44 LYS45 ILE46 PRO47 LYS48 VAL49 GLU50 MET51 SER52 ASP53 MET54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 ILE64 LEU65 ALA66 HIS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 THR75 ASP76 THR77 TYR78 ALA79 CYS80 ARG81 VAL82 LYS83 HIS84 ASP85 SER86 MET87 ALA88 GLU89 PRO90 LYS91 THR92 VAL93 TYR94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 5 SER1 ILE2 TYR3 ARG4 TYR5 TYR6 GLY7 LEU8
Unit 6 GLN1 SER2 VAL3 THR4 GLN5 PRO6 ASP7 ALA8 ARG9 VAL10 THR11 VAL12 SER13 GLU14 GLY15 ALA16 SER17 LEU18 GLN19 LEU20 ARG21 CYS22 LYS23 TYR24 SER25 TYR26 SER27 ALA28 THR29 PRO30 TYR31 LEU32 PHE33 TRP34 TYR35 VAL36 GLN37 TYR38 PRO39 ARG40 GLN41 GLY42 LEU43 GLN44 LEU45 LEU46 LEU47 LYS48 TYR49 TYR50 SER51 GLY52 ASP53 PRO54 VAL55 VAL56 GLN57 GLY58 VAL59 ASN60 GLY61 PHE62 GLU63 ALA64 GLU65 PHE66 SER67 LYS68 SER69 ASN70 SER71 SER72 PHE73 HIS74 LEU75 ARG76 LYS77 ALA78 SER79 VAL80 HIS81 TRP82 SER83 ASP84 SER85 ALA86 VAL87 TYR88 PHE89 CYS90 ALA91 VAL92 SER93 GLY99 PHE100 ALA101 SER102 ALA103 LEU104 THR105 PHE106 GLY107 SER108 GLY109 THR110 LYS111 VAL112 ILE113 VAL114 LEU115 PRO116 TYR117 ILE118 GLN119 ASN120 PRO121 GLU122 PRO123 ALA124 VAL125 TYR126 ALA127 LEU128 LYS129 ASP132 PRO133 ARG134 SER135 GLN136 ASP137 SER138 THR139 LEU140 CYS141 LEU142 PHE143 THR144 ASP145 PHE146 ASP147 SER148 GLN149 ILE150 ASN151 VAL152 PRO153 LYS154 THR155 MET156 GLU157 SER158 GLY159 THR160 PHE161 ILE162 THR163 ASP164 ALA165 THR166 VAL167 LEU168 ASP169 MET170 LYS171 ALA172 MET173 ASP174 SER175 LYS176 SER177 ASN178 GLY179 ALA180 ILE181 ALA182 TRP183 SER184 ASN185 GLN186 THR187 SER188 PHE189 THR190 CYS191 GLN192 ASP193 ILE194 PHE195 LYS196 GLU197 THR198 ASN203 ALA204 THR205 TYR206 PRO207 SER208 SER209 ASP210 VAL211 PRO212 CYS213
Unit 7 GLU1 ALA2 ALA3 VAL4 THR5 GLN6 SER7 PRO8 ARG9 ASN10 LYS11 VAL12 ALA13 VAL14 THR15 GLY16 GLY17 LYS18 VAL19 THR20 LEU21 SER22 CYS23 ASN24 GLN25 THR26 ASN27 ASN28 HIS29 ASN30 ASN31 MET32 TYR33 TRP34 TYR35 ARG36 GLN37 ASP38 THR39 GLY40 HIS41 GLY42 LEU43 ARG44 LEU45 ILE46 HIS47 TYR48 SER49 TYR50 GLY51 ALA52 GLY53 SER54 THR55 GLU56 LYS57 GLY58 ASP59 ILE60 PRO61 ASP62 GLY63 TYR65 LYS66 ALA67 SER68 ARG69 PRO70 SER71 GLN72 GLU73 ASN74 PHE75 SER76 LEU77 ILE78 LEU79 GLU80 LEU81 ALA82 THR83 PRO84 SER85 GLN86 THR87 SER88 VAL89 TYR90 PHE91 CYS92 ALA93 SER94 GLY95 GLY96 GLY97 GLY98 THR105 LEU106 TYR107 PHE108 GLY109 ALA110 GLY111 THR112 ARG113 LEU114 SER115 VAL116 GLU117 ASP118 LEU119 ARG120 ASN121 VAL122 THR123 PRO124 PRO125 LYS126 VAL127 SER128 LEU129 PHE130 GLU131 PRO132 SER133 LYS134 ALA135 GLU136 ILE137 ALA138 ASN139 LYS140 GLN141 LYS142 ALA143 THR144 LEU145 VAL146 CYS147 LEU148 ALA149 ARG150 GLY151 PHE152 PHE153 PRO154 ASP155 HIS156 VAL157 GLU158 LEU159 SER160 TRP161 TRP162 VAL163 ASN164 GLY165 LYS166 GLU167 VAL168 HIS169 SER170 GLY171 VAL172 SER173 THR174 ASP175 PRO176 GLN177 ALA178 TYR179 LYS180 GLU181 SER182 ASN186 TYR187 SER189 TYR190 CYS191 LEU192 SER193 SER194 ARG195 LEU196 ARG197 VAL198 SER199 ALA200 THR201 PHE202 TRP203 HIS204 ASN205 PRO206 ARG207 ASN208 HIS209 PHE210 ARG211 CYS212 GLN213 VAL214 GLN215 PHE216 HIS217 GLY218 LEU219 SER220 GLU221 GLU222 ASP223 LYS224 TRP225 PRO226 GLU227 GLY228 SER229 PRO230 LYS231 PRO232 VAL233 THR234 GLN235 ASN236 ILE237 SER238 ALA239 GLU240 ALA241 TRP242 GLY243 ARG244 ALA245 ASP246 CYS247 LEU316
Unit 8 GLY1 PRO2 HIS3 SER4 LEU5 ARG6 TYR7 PHE8 VAL9 THR10 ALA11 VAL12 SER13 ARG14 PRO15 GLY16 LEU17 GLY18 GLU19 PRO20 ARG21 TYR22 MET23 GLU24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLU32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 GLU41 ASN42 PRO43 ARG44 TYR45 GLU46 PRO47 ARG48 ALA49 ARG50 TRP51 MET52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 GLU61 ARG62 GLU63 THR64 GLN65 LYS66 ALA67 LYS68 GLY69 ASN70 GLU71 GLN72 SER73 PHE74 ARG75 VAL76 ASP77 LEU78 ARG79 THR80 LEU81 LEU82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 LYS89 GLY90 GLY91 SER92 HIS93 THR94 ILE95 GLN96 VAL97 ILE98 SER99 GLY100 CYS101 GLU102 VAL103 GLY104 SER105 ASP106 GLY107 ARG108 LEU109 LEU110 ARG111 GLY112 TYR113 GLN114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 CYS121 ASP122 TYR123 ILE124 ALA125 LEU126 ASN127 GLU128 ASP129 LEU130 LYS131 THR132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 LEU141 ILE142 THR143 LYS144 HIS145 LYS146 TRP147 GLU148 GLN149 ALA150 GLY151 GLU152 ALA153 GLU154 ARG155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 LYS173 ASN174 GLY175 ASN176 ALA177 THR178 LEU179 LEU180 ARG181 THR182 ASP183 SER184 PRO185 LYS186 ALA187 HIS188 VAL189 THR190 HIS191 HIS192 SER193 ARG194 PRO195 GLU196 ASP197 LYS198 VAL199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 ASP212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 LEU219 ASN220 GLY221 GLU222 GLU223 LEU224 ILE225 GLN226 ASP227 MET228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 SER246 VAL247 VAL248 VAL249 PRO250 LEU251 GLY252 LYS253 GLU254 GLN255 TYR256 TYR257 THR258 CYS259 HIS260 VAL261 TYR262 HIS263 GLN264 GLY265 LEU266 PRO267 GLU268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274
Unit 9 ILE1 GLN2 LYS3 THR4 PRO5 GLN6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 PRO15 GLU16 ASN17 GLY18 LYS19 PRO20 ASN21 ILE22 LEU23 ASN24 CYS25 TYR26 VAL27 THR28 GLN29 PHE30 HIS31 PRO32 PRO33 HIS34 ILE35 GLU36 ILE37 GLN38 MET39 LEU40 LYS41 ASN42 GLY43 LYS44 LYS45 ILE46 PRO47 LYS48 VAL49 GLU50 MET51 SER52 ASP53 MET54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 ILE64 LEU65 ALA66 HIS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 THR75 ASP76 THR77 TYR78 ALA79 CYS80 ARG81 VAL82 LYS83 HIS84 ASP85 SER86 MET87 ALA88 GLU89 PRO90 LYS91 THR92 VAL93 TYR94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 10 SER1 ILE2 TYR3 ARG4 TYR5 TYR6 GLY7 LEU8

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany