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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE ACCESSORY SUBUNIT OF MURINE MITOCHO POLYMERASE GAMMA
Keywords INTERMOLECULAR FOUR HELIX BUNDLE, DNA BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1G5H     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  A 405 3172 48
2  Protein   MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  B 397 3105 48
3  Protein   MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  C 405 3165 48
4  Protein   MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  D 415 3257 48
5  Ligand   MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  A 1 0 1
6  Ligand   MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  B 2 0 7
7  Ligand   MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  C 1 0 1
8  Ligand   MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  D 2 0 7
9 Water     872 0 872
total       2500 12699 1080

Proteins
Unit 1 GLU41 ALA42 LEU43 VAL44 ASP45 LEU46 CYS47 ARG48 ARG49 ARG50 HIS51 PHE52 LEU53 SER54 GLY55 THR56 PRO57 GLN58 GLN59 LEU60 SER61 THR62 ALA63 ALA64 LEU65 LEU66 SER67 GLY68 CYS69 HIS70 ALA71 ARG72 PHE73 GLY74 PRO75 LEU76 GLY77 VAL78 GLU79 LEU80 ARG81 LYS82 ASN83 LEU84 ALA85 SER86 GLN87 TRP88 TRP89 SER90 SER91 MSE92 VAL93 VAL94 PHE95 ARG96 GLU97 GLN98 VAL99 PHE100 ALA101 VAL102 ASP103 SER104 LEU105 HIS106 GLN107 GLU108 PRO109 GLY110 SER111 SER112 GLN113 PRO114 ARG115 ASP116 SER117 ALA118 PHE119 ARG120 LEU121 VAL122 SER123 PRO124 GLU125 SER126 ILE127 ARG128 GLU129 ILE130 LEU131 GLN132 ASP133 SER137 LYS138 GLU139 GLN140 LEU141 VAL142 ALA143 PHE144 LEU145 GLU146 ASN147 LEU148 LEU149 LYS150 THR151 SER152 GLY153 LYS154 LEU155 ARG156 ALA157 THR158 LEU159 LEU160 HIS161 GLY162 ALA163 LEU164 GLU165 HIS166 TYR167 VAL168 ASN169 CYS170 LEU171 ASP172 LEU173 VAL174 ASN175 ARG176 LYS177 LEU178 PRO179 PHE180 GLY181 LEU182 ALA183 GLN184 ILE185 GLY186 VAL187 CYS188 PHE189 HIS190 PRO191 VAL192 SER193 THR203 ARG204 VAL205 GLY206 GLU207 LYS208 THR209 GLU210 ALA211 SER212 LEU213 VAL214 TRP215 PHE216 THR217 PRO218 THR219 ARG220 THR221 SER222 SER223 GLN224 TRP225 LEU226 ASP227 PHE228 TRP229 LEU230 ARG231 HIS232 ARG233 LEU234 LEU235 TRP236 TRP237 ARG238 LYS239 PHE240 ALA241 MSE242 SER243 PRO244 SER245 ASN246 PHE247 SER248 SER249 ALA250 ASP251 CYS252 GLN253 ASP254 GLU255 LEU256 GLY257 ARG258 LYS259 GLY260 SER261 LYS262 LEU263 TYR264 TYR265 SER266 PHE267 PRO268 TRP269 GLY270 LYS271 GLU272 PRO273 ILE274 GLU275 THR276 LEU277 TRP278 ASN279 LEU280 GLY281 ASP282 GLN283 GLU284 LEU285 LEU286 HIS287 THR288 TYR289 PRO290 GLY291 ASN292 VAL293 SER294 THR295 ILE296 GLN297 GLY298 ARG299 ASP300 GLY301 ARG302 LYS303 ASN304 VAL305 VAL306 PRO307 CYS308 VAL309 LEU310 SER311 VAL312 SER313 GLY314 ASP315 VAL316 ASP317 LEU318 GLY319 THR320 LEU321 ALA322 TYR323 LEU324 TYR325 ASP326 SER327 PHE328 GLN329 LEU330 ARG343 LYS344 VAL345 LEU346 LYS347 LEU348 HIS349 PRO350 CYS351 LEU352 ALA353 PRO354 ILE355 LYS356 VAL357 ALA358 LEU359 ASP360 VAL361 GLY362 LYS363 GLY364 PRO365 THR366 VAL367 GLU368 LEU369 ARG370 GLN371 VAL372 CYS373 GLN374 GLY375 LEU376 LEU377 ASN378 GLU379 LEU380 LEU381 GLU382 ASN383 GLY384 ILE385 SER386 VAL387 TRP388 PRO389 GLY390 TYR391 SER392 GLU393 THR394 VAL395 HIS396 SER397 SER398 LEU399 GLU400 GLN401 LEU402 HIS403 SER404 LYS405 TYR406 ASP407 GLU408 MSE409 SER410 VAL411 LEU412 PHE413 SER414 VAL415 LEU416 VAL417 THR418 GLU419 THR420 THR421 LEU422 GLU423 ASN424 GLY425 LEU426 ILE427 GLN428 LEU429 ARG430 SER431 ARG432 ASP433 THR434 THR435 MSE436 LYS437 GLU438 MSE439 MSE440 HIS441 ILE442 SER443 LYS444 LEU445 ARG446 ASP447 PHE448 LEU449 VAL450 LYS451 TYR452 LEU453 ALA454 SER455 ALA456 SER457 ASN458 VAL459 ALA460 ALA461 ALA462 LEU463 ASP464 HIS465 HIS466 HIS467 HIS468 HIS469
Unit 2 ARG40 GLU41 ALA42 LEU43 VAL44 ASP45 LEU46 CYS47 ARG48 ARG49 ARG50 HIS51 PHE52 LEU53 SER54 GLY55 THR56 PRO57 GLN58 GLN59 LEU60 SER61 THR62 ALA63 ALA64 LEU65 LEU66 SER67 GLY68 CYS69 HIS70 ALA71 ARG72 PHE73 GLY74 PRO75 LEU76 GLY77 VAL78 GLU79 LEU80 ARG81 LYS82 ASN83 LEU84 ALA85 SER86 GLN87 TRP88 TRP89 SER90 SER91 MSE92 VAL93 VAL94 PHE95 ARG96 GLU97 GLN98 VAL99 PHE100 ALA101 VAL102 ASP103 SER104 LEU105 HIS106 GLN107 GLU108 PRO109 GLY110 ARG115 ASP116 SER117 ALA118 PHE119 ARG120 LEU121 VAL122 SER123 PRO124 GLU125 SER126 ILE127 ARG128 GLU129 ILE130 LEU131 GLN132 ASP133 ARG134 GLU135 PRO136 SER137 LYS138 GLU139 GLN140 LEU141 VAL142 ALA143 PHE144 LEU145 GLU146 ASN147 LEU148 LEU149 LYS150 THR151 SER152 GLY153 LYS154 LEU155 ARG156 ALA157 THR158 LEU159 LEU160 HIS161 GLY162 ALA163 LEU164 GLU165 HIS166 TYR167 VAL168 ASN169 CYS170 LEU171 ASP172 LEU173 VAL174 ASN175 ARG176 LYS177 LEU178 PRO179 PHE180 GLY181 LEU182 ALA183 GLN184 ILE185 GLY186 VAL187 CYS188 PHE189 HIS190 PRO191 VAL192 SER193 ARG204 VAL205 GLY206 GLU207 LYS208 THR209 GLU210 ALA211 SER212 LEU213 VAL214 TRP215 PHE216 THR217 PRO218 THR219 ARG220 THR221 SER222 SER223 GLN224 TRP225 LEU226 ASP227 PHE228 TRP229 LEU230 ARG231 HIS232 ARG233 LEU234 LEU235 TRP236 TRP237 ARG238 LYS239 PHE240 ALA241 MSE242 SER243 PRO244 SER245 ASN246 PHE247 SER248 SER249 ALA250 ASP251 CYS252 GLN253 ASP254 GLU255 LEU256 GLY257 ARG258 LYS259 GLY260 SER261 LYS262 LEU263 TYR264 TYR265 SER266 PHE267 PRO268 TRP269 GLY270 LYS271 GLU272 PRO273 ILE274 GLU275 THR276 LEU277 TRP278 ASN279 LEU280 GLY281 ASP282 GLN283 GLU284 LEU285 LEU286 HIS287 THR288 TYR289 PRO290 GLY291 ASN292 VAL293 SER294 THR295 ILE296 GLN297 GLY298 ARG299 ASP300 GLY301 ARG302 LYS303 ASN304 VAL305 VAL306 PRO307 CYS308 VAL309 LEU310 SER311 VAL312 SER313 GLY314 ASP315 VAL316 ASP317 LEU318 GLY319 THR320 LEU321 ALA322 TYR323 LEU324 TYR325 ASP326 SER327 PHE328 GLN329 LEU330 ALA331 GLU332 ARG343 LYS344 VAL345 LEU346 LYS347 LEU348 HIS349 PRO350 CYS351 LEU352 ALA353 PRO354 ILE355 LYS356 VAL357 ALA358 LEU359 ASP360 VAL361 GLY362 LYS363 GLY364 PRO365 THR366 VAL367 GLU368 LEU369 ARG370 GLN371 VAL372 CYS373 GLN374 GLY375 LEU376 LEU377 ASN378 GLU379 LEU380 LEU381 GLU382 ASN383 GLY384 ILE385 SER386 VAL387 TRP388 PRO389 GLY390 TYR391 SER392 GLU393 THR394 VAL395 HIS396 SER397 SER398 LEU399 GLU400 GLN401 LEU402 HIS403 SER404 LYS405 TYR406 ASP407 GLU408 MSE409 SER410 VAL411 LEU412 PHE413 SER414 VAL415 LEU416 VAL417 THR418 GLU419 THR420 THR421 LEU422 GLU423 ASN424 GLY425 LEU426 ILE427 GLN428 LEU429 ARG430 SER431 ARG432 ASP433 THR434 THR435 MSE436 LYS437 GLU438 MSE439 MSE440 HIS441 ILE442 SER443 LYS444 LEU445 ARG446 ASP447 PHE448 LEU449 VAL450 LYS451 TYR452 LEU453 ALA454 SER455 ALA456 SER457 ASN458 VAL459 ALA460
Unit 3 GLU41 ALA42 LEU43 VAL44 ASP45 LEU46 CYS47 ARG48 ARG49 ARG50 HIS51 PHE52 LEU53 SER54 GLY55 THR56 PRO57 GLN58 GLN59 LEU60 SER61 THR62 ALA63 ALA64 LEU65 LEU66 SER67 GLY68 CYS69 HIS70 ALA71 ARG72 PHE73 GLY74 PRO75 LEU76 GLY77 VAL78 GLU79 LEU80 ARG81 LYS82 ASN83 LEU84 ALA85 SER86 GLN87 TRP88 TRP89 SER90 SER91 MSE92 VAL93 VAL94 PHE95 ARG96 GLU97 GLN98 VAL99 PHE100 ALA101 VAL102 ASP103 SER104 LEU105 HIS106 GLN107 GLU108 PRO109 GLY110 SER111 SER112 GLN113 PRO114 ARG115 ASP116 SER117 ALA118 PHE119 ARG120 LEU121 VAL122 SER123 PRO124 GLU125 SER126 ILE127 ARG128 GLU129 ILE130 LEU131 GLN132 ASP133 SER137 LYS138 GLU139 GLN140 LEU141 VAL142 ALA143 PHE144 LEU145 GLU146 ASN147 LEU148 LEU149 LYS150 THR151 SER152 GLY153 LYS154 LEU155 ARG156 ALA157 THR158 LEU159 LEU160 HIS161 GLY162 ALA163 LEU164 GLU165 HIS166 TYR167 VAL168 ASN169 CYS170 LEU171 ASP172 LEU173 VAL174 ASN175 ARG176 LYS177 LEU178 PRO179 PHE180 GLY181 LEU182 ALA183 GLN184 ILE185 GLY186 VAL187 CYS188 PHE189 HIS190 PRO191 VAL192 SER193 THR203 ARG204 VAL205 GLY206 GLU207 LYS208 THR209 GLU210 ALA211 SER212 LEU213 VAL214 TRP215 PHE216 THR217 PRO218 THR219 ARG220 THR221 SER222 SER223 GLN224 TRP225 LEU226 ASP227 PHE228 TRP229 LEU230 ARG231 HIS232 ARG233 LEU234 LEU235 TRP236 TRP237 ARG238 LYS239 PHE240 ALA241 MSE242 SER243 PRO244 SER245 ASN246 PHE247 SER248 SER249 ALA250 ASP251 CYS252 GLN253 ASP254 GLU255 LEU256 GLY257 ARG258 LYS259 GLY260 SER261 LYS262 LEU263 TYR264 TYR265 SER266 PHE267 PRO268 TRP269 GLY270 LYS271 GLU272 PRO273 ILE274 GLU275 THR276 LEU277 TRP278 ASN279 LEU280 GLY281 ASP282 GLN283 GLU284 LEU285 LEU286 HIS287 THR288 TYR289 PRO290 GLY291 ASN292 VAL293 SER294 THR295 ILE296 GLN297 GLY298 ARG299 ASP300 GLY301 ARG302 LYS303 ASN304 VAL305 VAL306 PRO307 CYS308 VAL309 LEU310 SER311 VAL312 SER313 GLY314 ASP315 VAL316 ASP317 LEU318 GLY319 THR320 LEU321 ALA322 TYR323 LEU324 TYR325 ASP326 SER327 PHE328 GLN329 LEU330 ARG343 LYS344 VAL345 LEU346 LYS347 LEU348 HIS349 PRO350 CYS351 LEU352 ALA353 PRO354 ILE355 LYS356 VAL357 ALA358 LEU359 ASP360 VAL361 GLY362 LYS363 GLY364 PRO365 THR366 VAL367 GLU368 LEU369 ARG370 GLN371 VAL372 CYS373 GLN374 GLY375 LEU376 LEU377 ASN378 GLU379 LEU380 LEU381 GLU382 ASN383 GLY384 ILE385 SER386 VAL387 TRP388 PRO389 GLY390 TYR391 SER392 GLU393 THR394 VAL395 HIS396 SER397 SER398 LEU399 GLU400 GLN401 LEU402 HIS403 SER404 LYS405 TYR406 ASP407 GLU408 MSE409 SER410 VAL411 LEU412 PHE413 SER414 VAL415 LEU416 VAL417 THR418 GLU419 THR420 THR421 LEU422 GLU423 ASN424 GLY425 LEU426 ILE427 GLN428 LEU429 ARG430 SER431 ARG432 ASP433 THR434 THR435 MSE436 LYS437 GLU438 MSE439 MSE440 HIS441 ILE442 SER443 LYS444 LEU445 ARG446 ASP447 PHE448 LEU449 VAL450 LYS451 TYR452 LEU453 ALA454 SER455 ALA456 SER457 ASN458 VAL459 ALA460 ALA461 ALA462 LEU463 ASP464 HIS465 HIS466 HIS467 HIS468 HIS469
Unit 4 ARG40 GLU41 ALA42 LEU43 VAL44 ASP45 LEU46 CYS47 ARG48 ARG49 ARG50 HIS51 PHE52 LEU53 SER54 GLY55 THR56 PRO57 GLN58 GLN59 LEU60 SER61 THR62 ALA63 ALA64 LEU65 LEU66 SER67 GLY68 CYS69 HIS70 ALA71 ARG72 PHE73 GLY74 PRO75 LEU76 GLY77 VAL78 GLU79 LEU80 ARG81 LYS82 ASN83 LEU84 ALA85 SER86 GLN87 TRP88 TRP89 SER90 SER91 MSE92 VAL93 VAL94 PHE95 ARG96 GLU97 GLN98 VAL99 PHE100 ALA101 VAL102 ASP103 SER104 LEU105 HIS106 GLN107 GLU108 PRO109 GLY110 ARG115 ASP116 SER117 ALA118 PHE119 ARG120 LEU121 VAL122 SER123 PRO124 GLU125 SER126 ILE127 ARG128 GLU129 ILE130 LEU131 GLN132 ASP133 ARG134 GLU135 PRO136 SER137 LYS138 GLU139 GLN140 LEU141 VAL142 ALA143 PHE144 LEU145 GLU146 ASN147 LEU148 LEU149 LYS150 THR151 SER152 GLY153 LYS154 LEU155 ARG156 ALA157 THR158 LEU159 LEU160 HIS161 GLY162 ALA163 LEU164 GLU165 HIS166 TYR167 VAL168 ASN169 CYS170 LEU171 ASP172 LEU173 VAL174 ASN175 ARG176 LYS177 LEU178 PRO179 PHE180 GLY181 LEU182 ALA183 GLN184 ILE185 GLY186 VAL187 CYS188 PHE189 HIS190 PRO191 VAL192 SER193 ARG204 VAL205 GLY206 GLU207 LYS208 THR209 GLU210 ALA211 SER212 LEU213 VAL214 TRP215 PHE216 THR217 PRO218 THR219 ARG220 THR221 SER222 SER223 GLN224 TRP225 LEU226 ASP227 PHE228 TRP229 LEU230 ARG231 HIS232 ARG233 LEU234 LEU235 TRP236 TRP237 ARG238 LYS239 PHE240 ALA241 MSE242 SER243 PRO244 SER245 ASN246 PHE247 SER248 SER249 ALA250 ASP251 CYS252 GLN253 ASP254 GLU255 LEU256 GLY257 ARG258 LYS259 GLY260 SER261 LYS262 LEU263 TYR264 TYR265 SER266 PHE267 PRO268 TRP269 GLY270 LYS271 GLU272 PRO273 ILE274 GLU275 THR276 LEU277 TRP278 ASN279 LEU280 GLY281 ASP282 GLN283 GLU284 LEU285 LEU286 HIS287 THR288 TYR289 PRO290 GLY291 ASN292 VAL293 SER294 THR295 ILE296 GLN297 GLY298 ARG299 ASP300 GLY301 ARG302 LYS303 ASN304 VAL305 VAL306 PRO307 CYS308 VAL309 LEU310 SER311 VAL312 SER313 GLY314 ASP315 VAL316 ASP317 LEU318 GLY319 THR320 LEU321 ALA322 TYR323 LEU324 TYR325 ASP326 SER327 PHE328 GLN329 LEU330 ALA331 GLU332 ASN333 SER334 PHE335 ALA336 ARG337 LYS338 LYS339 SER340 LEU341 GLN342 ARG343 LYS344 VAL345 LEU346 LYS347 LEU348 HIS349 PRO350 CYS351 LEU352 ALA353 PRO354 ILE355 LYS356 VAL357 ALA358 LEU359 ASP360 VAL361 GLY362 LYS363 GLY364 PRO365 THR366 VAL367 GLU368 LEU369 ARG370 GLN371 VAL372 CYS373 GLN374 GLY375 LEU376 LEU377 ASN378 GLU379 LEU380 LEU381 GLU382 ASN383 GLY384 ILE385 SER386 VAL387 TRP388 PRO389 GLY390 TYR391 SER392 GLU393 THR394 VAL395 HIS396 SER397 SER398 LEU399 GLU400 GLN401 LEU402 HIS403 SER404 LYS405 TYR406 ASP407 GLU408 MSE409 SER410 VAL411 LEU412 PHE413 SER414 VAL415 LEU416 VAL417 THR418 GLU419 THR420 THR421 LEU422 GLU423 ASN424 GLY425 LEU426 ILE427 GLN428 LEU429 ARG430 SER431 ARG432 ASP433 THR434 THR435 MSE436 LYS437 GLU438 MSE439 MSE440 HIS441 ILE442 SER443 LYS444 LEU445 ARG446 ASP447 PHE448 LEU449 VAL450 LYS451 TYR452 LEU453 ALA454 SER455 ALA456 SER457 ASN458 VAL459 ALA460 ALA461 ALA462 LEU463 ASP464 HIS465 HIS466 HIS467 HIS468

Ligands
Unit 5 NA901
Unit 6 GOL6 NA903
Unit 7 NA902
Unit 8 GOL5 NA904

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany