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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATI GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TDP-L-RHA COMPLEX.
Keywords L-RHAMNOSE, NUCLEOTIDYLTRANSFERASE, PYROPHOSPHORYLASE, THYMIDYLYLTRANSFERASE, ALLOSTERY, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1G3L     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE  A 292 2285 0
2  Protein   GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE  B 292 2285 0
3  Protein   GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE  C 292 2285 0
4  Protein   GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE  D 293 2293 0
5  Ligand   GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE  A 3 0 75
6  Ligand   GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE  B 4 0 80
7  Ligand   GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE  C 3 0 75
8  Ligand   GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE  D 3 0 75
total       1182 9148 305
Proteins
Unit 1 LYS2 ARG3 LYS4 GLY5 ILE6 ILE7 LEU8 ALA9 GLY10 GLY11 SER12 GLY13 THR14 ARG15 LEU16 HIS17 PRO18 ALA19 THR20 LEU21 ALA22 ILE23 SER24 LYS25 GLN26 LEU27 LEU28 PRO29 VAL30 TYR31 ASP32 LYS33 PRO34 MET35 ILE36 TYR37 TYR38 PRO39 LEU40 SER41 THR42 LEU43 MET44 LEU45 ALA46 GLY47 ILE48 ARG49 GLU50 ILE51 LEU52 ILE53 ILE54 SER55 THR56 PRO57 GLN58 ASP59 THR60 PRO61 ARG62 PHE63 GLN64 GLN65 LEU66 LEU67 GLY68 ASP69 GLY70 SER71 ASN72 TRP73 GLY74 LEU75 ASP76 LEU77 GLN78 TYR79 ALA80 VAL81 GLN82 PRO83 SER84 PRO85 ASP86 GLY87 LEU88 ALA89 GLN90 ALA91 PHE92 LEU93 ILE94 GLY95 GLU96 SER97 PHE98 ILE99 GLY100 ASN101 ASP102 LEU103 SER104 ALA105 LEU106 VAL107 LEU108 GLY109 ASP110 ASN111 LEU112 TYR113 TYR114 GLY115 HIS116 ASP117 PHE118 HIS119 GLU120 LEU121 LEU122 GLY123 SER124 ALA125 SER126 GLN127 ARG128 GLN129 THR130 GLY131 ALA132 SER133 VAL134 PHE135 ALA136 TYR137 HIS138 VAL139 LEU140 ASP141 PRO142 GLU143 ARG144 TYR145 GLY146 VAL147 VAL148 GLU149 PHE150 ASP151 GLN152 GLY153 GLY154 LYS155 ALA156 ILE157 SER158 LEU159 GLU160 GLU161 LYS162 PRO163 LEU164 GLU165 PRO166 LYS167 SER168 ASN169 TYR170 ALA171 VAL172 THR173 GLY174 LEU175 TYR176 PHE177 TYR178 ASP179 GLN180 GLN181 VAL182 VAL183 ASP184 ILE185 ALA186 ARG187 ASP188 LEU189 LYS190 PRO191 SER192 PRO193 ARG194 GLY195 GLU196 LEU197 GLU198 ILE199 THR200 ASP201 VAL202 ASN203 ARG204 ALA205 TYR206 LEU207 GLU208 ARG209 GLY210 GLN211 LEU212 SER213 VAL214 GLU215 ILE216 MET217 GLY218 ARG219 GLY220 TYR221 ALA222 TRP223 LEU224 ASP225 THR226 GLY227 THR228 HIS229 ASP230 SER231 LEU232 LEU233 GLU234 ALA235 GLY236 GLN237 PHE238 ILE239 ALA240 THR241 LEU242 GLU243 ASN244 ARG245 GLN246 GLY247 LEU248 LYS249 VAL250 ALA251 CYS252 PRO253 GLU254 GLU255 ILE256 ALA257 TYR258 ARG259 GLN260 LYS261 TRP262 ILE263 ASP264 ALA265 ALA266 GLN267 LEU268 GLU269 LYS270 LEU271 ALA272 ALA273 PRO274 LEU275 ALA276 LYS277 ASN278 GLY279 TYR280 GLY281 GLN282 TYR283 LEU284 LYS285 ARG286 LEU287 LEU288 THR289 GLU290 THR291 VAL292 TYR293
Unit 2 LYS2 ARG3 LYS4 GLY5 ILE6 ILE7 LEU8 ALA9 GLY10 GLY11 SER12 GLY13 THR14 ARG15 LEU16 HIS17 PRO18 ALA19 THR20 LEU21 ALA22 ILE23 SER24 LYS25 GLN26 LEU27 LEU28 PRO29 VAL30 TYR31 ASP32 LYS33 PRO34 MET35 ILE36 TYR37 TYR38 PRO39 LEU40 SER41 THR42 LEU43 MET44 LEU45 ALA46 GLY47 ILE48 ARG49 GLU50 ILE51 LEU52 ILE53 ILE54 SER55 THR56 PRO57 GLN58 ASP59 THR60 PRO61 ARG62 PHE63 GLN64 GLN65 LEU66 LEU67 GLY68 ASP69 GLY70 SER71 ASN72 TRP73 GLY74 LEU75 ASP76 LEU77 GLN78 TYR79 ALA80 VAL81 GLN82 PRO83 SER84 PRO85 ASP86 GLY87 LEU88 ALA89 GLN90 ALA91 PHE92 LEU93 ILE94 GLY95 GLU96 SER97 PHE98 ILE99 GLY100 ASN101 ASP102 LEU103 SER104 ALA105 LEU106 VAL107 LEU108 GLY109 ASP110 ASN111 LEU112 TYR113 TYR114 GLY115 HIS116 ASP117 PHE118 HIS119 GLU120 LEU121 LEU122 GLY123 SER124 ALA125 SER126 GLN127 ARG128 GLN129 THR130 GLY131 ALA132 SER133 VAL134 PHE135 ALA136 TYR137 HIS138 VAL139 LEU140 ASP141 PRO142 GLU143 ARG144 TYR145 GLY146 VAL147 VAL148 GLU149 PHE150 ASP151 GLN152 GLY153 GLY154 LYS155 ALA156 ILE157 SER158 LEU159 GLU160 GLU161 LYS162 PRO163 LEU164 GLU165 PRO166 LYS167 SER168 ASN169 TYR170 ALA171 VAL172 THR173 GLY174 LEU175 TYR176 PHE177 TYR178 ASP179 GLN180 GLN181 VAL182 VAL183 ASP184 ILE185 ALA186 ARG187 ASP188 LEU189 LYS190 PRO191 SER192 PRO193 ARG194 GLY195 GLU196 LEU197 GLU198 ILE199 THR200 ASP201 VAL202 ASN203 ARG204 ALA205 TYR206 LEU207 GLU208 ARG209 GLY210 GLN211 LEU212 SER213 VAL214 GLU215 ILE216 MET217 GLY218 ARG219 GLY220 TYR221 ALA222 TRP223 LEU224 ASP225 THR226 GLY227 THR228 HIS229 ASP230 SER231 LEU232 LEU233 GLU234 ALA235 GLY236 GLN237 PHE238 ILE239 ALA240 THR241 LEU242 GLU243 ASN244 ARG245 GLN246 GLY247 LEU248 LYS249 VAL250 ALA251 CYS252 PRO253 GLU254 GLU255 ILE256 ALA257 TYR258 ARG259 GLN260 LYS261 TRP262 ILE263 ASP264 ALA265 ALA266 GLN267 LEU268 GLU269 LYS270 LEU271 ALA272 ALA273 PRO274 LEU275 ALA276 LYS277 ASN278 GLY279 TYR280 GLY281 GLN282 TYR283 LEU284 LYS285 ARG286 LEU287 LEU288 THR289 GLU290 THR291 VAL292 TYR293
Unit 3 LYS2 ARG3 LYS4 GLY5 ILE6 ILE7 LEU8 ALA9 GLY10 GLY11 SER12 GLY13 THR14 ARG15 LEU16 HIS17 PRO18 ALA19 THR20 LEU21 ALA22 ILE23 SER24 LYS25 GLN26 LEU27 LEU28 PRO29 VAL30 TYR31 ASP32 LYS33 PRO34 MET35 ILE36 TYR37 TYR38 PRO39 LEU40 SER41 THR42 LEU43 MET44 LEU45 ALA46 GLY47 ILE48 ARG49 GLU50 ILE51 LEU52 ILE53 ILE54 SER55 THR56 PRO57 GLN58 ASP59 THR60 PRO61 ARG62 PHE63 GLN64 GLN65 LEU66 LEU67 GLY68 ASP69 GLY70 SER71 ASN72 TRP73 GLY74 LEU75 ASP76 LEU77 GLN78 TYR79 ALA80 VAL81 GLN82 PRO83 SER84 PRO85 ASP86 GLY87 LEU88 ALA89 GLN90 ALA91 PHE92 LEU93 ILE94 GLY95 GLU96 SER97 PHE98 ILE99 GLY100 ASN101 ASP102 LEU103 SER104 ALA105 LEU106 VAL107 LEU108 GLY109 ASP110 ASN111 LEU112 TYR113 TYR114 GLY115 HIS116 ASP117 PHE118 HIS119 GLU120 LEU121 LEU122 GLY123 SER124 ALA125 SER126 GLN127 ARG128 GLN129 THR130 GLY131 ALA132 SER133 VAL134 PHE135 ALA136 TYR137 HIS138 VAL139 LEU140 ASP141 PRO142 GLU143 ARG144 TYR145 GLY146 VAL147 VAL148 GLU149 PHE150 ASP151 GLN152 GLY153 GLY154 LYS155 ALA156 ILE157 SER158 LEU159 GLU160 GLU161 LYS162 PRO163 LEU164 GLU165 PRO166 LYS167 SER168 ASN169 TYR170 ALA171 VAL172 THR173 GLY174 LEU175 TYR176 PHE177 TYR178 ASP179 GLN180 GLN181 VAL182 VAL183 ASP184 ILE185 ALA186 ARG187 ASP188 LEU189 LYS190 PRO191 SER192 PRO193 ARG194 GLY195 GLU196 LEU197 GLU198 ILE199 THR200 ASP201 VAL202 ASN203 ARG204 ALA205 TYR206 LEU207 GLU208 ARG209 GLY210 GLN211 LEU212 SER213 VAL214 GLU215 ILE216 MET217 GLY218 ARG219 GLY220 TYR221 ALA222 TRP223 LEU224 ASP225 THR226 GLY227 THR228 HIS229 ASP230 SER231 LEU232 LEU233 GLU234 ALA235 GLY236 GLN237 PHE238 ILE239 ALA240 THR241 LEU242 GLU243 ASN244 ARG245 GLN246 GLY247 LEU248 LYS249 VAL250 ALA251 CYS252 PRO253 GLU254 GLU255 ILE256 ALA257 TYR258 ARG259 GLN260 LYS261 TRP262 ILE263 ASP264 ALA265 ALA266 GLN267 LEU268 GLU269 LYS270 LEU271 ALA272 ALA273 PRO274 LEU275 ALA276 LYS277 ASN278 GLY279 TYR280 GLY281 GLN282 TYR283 LEU284 LYS285 ARG286 LEU287 LEU288 THR289 GLU290 THR291 VAL292 TYR293
Unit 4 MET1 LYS2 ARG3 LYS4 GLY5 ILE6 ILE7 LEU8 ALA9 GLY10 GLY11 SER12 GLY13 THR14 ARG15 LEU16 HIS17 PRO18 ALA19 THR20 LEU21 ALA22 ILE23 SER24 LYS25 GLN26 LEU27 LEU28 PRO29 VAL30 TYR31 ASP32 LYS33 PRO34 MET35 ILE36 TYR37 TYR38 PRO39 LEU40 SER41 THR42 LEU43 MET44 LEU45 ALA46 GLY47 ILE48 ARG49 GLU50 ILE51 LEU52 ILE53 ILE54 SER55 THR56 PRO57 GLN58 ASP59 THR60 PRO61 ARG62 PHE63 GLN64 GLN65 LEU66 LEU67 GLY68 ASP69 GLY70 SER71 ASN72 TRP73 GLY74 LEU75 ASP76 LEU77 GLN78 TYR79 ALA80 VAL81 GLN82 PRO83 SER84 PRO85 ASP86 GLY87 LEU88 ALA89 GLN90 ALA91 PHE92 LEU93 ILE94 GLY95 GLU96 SER97 PHE98 ILE99 GLY100 ASN101 ASP102 LEU103 SER104 ALA105 LEU106 VAL107 LEU108 GLY109 ASP110 ASN111 LEU112 TYR113 TYR114 GLY115 HIS116 ASP117 PHE118 HIS119 GLU120 LEU121 LEU122 GLY123 SER124 ALA125 SER126 GLN127 ARG128 GLN129 THR130 GLY131 ALA132 SER133 VAL134 PHE135 ALA136 TYR137 HIS138 VAL139 LEU140 ASP141 PRO142 GLU143 ARG144 TYR145 GLY146 VAL147 VAL148 GLU149 PHE150 ASP151 GLN152 GLY153 GLY154 LYS155 ALA156 ILE157 SER158 LEU159 GLU160 GLU161 LYS162 PRO163 LEU164 GLU165 PRO166 LYS167 SER168 ASN169 TYR170 ALA171 VAL172 THR173 GLY174 LEU175 TYR176 PHE177 TYR178 ASP179 GLN180 GLN181 VAL182 VAL183 ASP184 ILE185 ALA186 ARG187 ASP188 LEU189 LYS190 PRO191 SER192 PRO193 ARG194 GLY195 GLU196 LEU197 GLU198 ILE199 THR200 ASP201 VAL202 ASN203 ARG204 ALA205 TYR206 LEU207 GLU208 ARG209 GLY210 GLN211 LEU212 SER213 VAL214 GLU215 ILE216 MET217 GLY218 ARG219 GLY220 TYR221 ALA222 TRP223 LEU224 ASP225 THR226 GLY227 THR228 HIS229 ASP230 SER231 LEU232 LEU233 GLU234 ALA235 GLY236 GLN237 PHE238 ILE239 ALA240 THR241 LEU242 GLU243 ASN244 ARG245 GLN246 GLY247 LEU248 LYS249 VAL250 ALA251 CYS252 PRO253 GLU254 GLU255 ILE256 ALA257 TYR258 ARG259 GLN260 LYS261 TRP262 ILE263 ASP264 ALA265 ALA266 GLN267 LEU268 GLU269 LYS270 LEU271 ALA272 ALA273 PRO274 LEU275 ALA276 LYS277 ASN278 GLY279 TYR280 GLY281 GLN282 TYR283 LEU284 LYS285 ARG286 LEU287 LEU288 THR289 GLU290 THR291 VAL292 TYR293
Ligands
Unit 5 TRH500 TRH501 SO4701
Unit 6 TRH502 TRH503 SO4700 SO4702
Unit 7 TRH504 TRH505 SO4703
Unit 8 TRH506 TRH507 SO4704
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany