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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN WIT PEPTIDE LIGAND GLY-HIS-ARG-PRO-AMIDE
Keywords BLOOD COAGULATION, PLASMA, PLATELET, FIBRINOGEN, FIBRIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1FZF     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FIBRINOGEN  A 67 547 0
2  Protein   FIBRINOGEN  B 303 2428 0
3  Protein   FIBRINOGEN  C 292 2343 0
4  Protein   FIBRINOGEN  D 54 441 0
5  Protein   FIBRINOGEN  E 296 2377 0
6  Protein   FIBRINOGEN  F 285 2287 0
7  Protein   FIBRINOGEN  S 4 31 0
8  Protein   FIBRINOGEN  T 4 31 0
9  Protein   FIBRINOGEN  M 4 31 0
10  Protein   FIBRINOGEN  N 4 31 0
11  Ligand   FIBRINOGEN  B 2 0 15
12  Ligand   FIBRINOGEN  C 2 0 2
13  Ligand   FIBRINOGEN  E 3 0 16
14  Ligand   FIBRINOGEN  F 1 0 1
total       1321 10547 34
Proteins
Unit 1 VAL126 ILE127 GLU128 LYS129 VAL130 GLN131 HIS132 ILE133 GLN134 LEU135 LEU136 GLN137 LYS138 ASN139 VAL140 ARG141 ALA142 GLN143 LEU144 VAL145 ASP146 MET147 LYS148 ARG149 LEU150 GLU151 VAL152 ASP153 ILE154 ASP155 ILE156 LYS157 ILE158 ARG159 SER160 CYS161 ARG162 GLY163 SER164 CYS165 SER166 ARG167 ALA168 LEU169 ALA170 ARG171 GLU172 VAL173 ASP174 LEU175 LYS176 ASP177 TYR178 GLU179 ASP180 GLN181 GLN182 LYS183 GLN184 LEU185 GLU186 GLN187 VAL188 ILE189 ALA190 LYS191 ASP192
Unit 2 VAL157 ASN158 SER159 ASN160 ILE161 PRO162 THR163 ASN164 LEU165 ARG166 VAL167 LEU168 ARG169 SER170 ILE171 LEU172 GLU173 ASN174 LEU175 ARG176 SER177 LYS178 ILE179 GLN180 LYS181 LEU182 GLU183 SER184 ASP185 VAL186 SER187 ALA188 GLN189 MET190 GLU191 TYR192 CYS193 ARG194 THR195 PRO196 CYS197 THR198 VAL199 SER200 CYS201 ASN202 ILE203 PRO204 VAL205 VAL206 SER207 GLY208 LYS209 GLU210 CYS211 GLU212 GLU213 ILE214 ILE215 ARG216 LYS217 GLY218 GLY219 GLU220 THR221 SER222 GLU223 MET224 TYR225 LEU226 ILE227 GLN228 PRO229 ASP230 SER231 SER232 VAL233 LYS234 PRO235 TYR236 ARG237 VAL238 TYR239 CYS240 ASP241 MET242 ASN243 THR244 GLU245 ASN246 GLY247 GLY248 TRP249 THR250 VAL251 ILE252 GLN253 ASN254 ARG255 GLN256 ASP257 GLY258 SER259 VAL260 ASP261 PHE262 GLY263 ARG264 LYS265 TRP266 ASP267 PRO268 TYR269 LYS270 GLN271 GLY272 PHE273 GLY274 ASN275 VAL276 ALA277 THR278 ASN279 THR280 ASP281 GLY282 LYS283 ASN284 TYR285 CYS286 GLY287 LEU288 PRO289 GLY290 GLU291 TYR292 TRP293 LEU294 GLY295 ASN296 ASP297 LYS298 ILE299 SER300 GLN301 LEU302 THR303 ARG304 MET305 GLY306 PRO307 THR308 GLU309 LEU310 LEU311 ILE312 GLU313 MET314 GLU315 ASP316 TRP317 LYS318 GLY319 ASP320 LYS321 VAL322 LYS323 ALA324 HIS325 TYR326 GLY327 GLY328 PHE329 THR330 VAL331 GLN332 ASN333 GLU334 ALA335 ASN336 LYS337 TYR338 GLN339 ILE340 SER341 VAL342 ASN343 LYS344 TYR345 ARG346 GLY347 THR348 ALA349 GLY350 ASN351 ALA352 LEU353 MET354 ASP355 GLY356 ALA357 SER358 GLN359 LEU360 MET361 GLY362 GLU363 ASN364 ARG365 THR366 MET367 THR368 ILE369 HIS370 ASN371 GLY372 MET373 PHE374 PHE375 SER376 THR377 TYR378 ASP379 ARG380 ASP381 ASN382 ASP383 GLY384 TRP385 LEU386 THR387 SER388 ASP389 PRO390 ARG391 LYS392 GLN393 CYS394 SER395 LYS396 GLU397 ASP398 GLY399 GLY400 GLY401 TRP402 TRP403 TYR404 ASN405 ARG406 CYS407 HIS408 ALA409 ALA410 ASN411 PRO412 ASN413 GLY414 ARG415 TYR416 TYR417 TRP418 GLY419 GLY420 GLN421 TYR422 THR423 TRP424 ASP425 MET426 ALA427 LYS428 HIS429 GLY430 THR431 ASP432 ASP433 GLY434 VAL435 VAL436 TRP437 MET438 ASN439 TRP440 LYS441 GLY442 SER443 TRP444 TYR445 SER446 MET447 ARG448 LYS449 MET450 SER451 MET452 LYS453 ILE454 ARG455 PRO456 PHE457 PHE458 PRO459
Unit 3 THR102 HIS103 ASP104 SER105 SER106 ILE107 ARG108 TYR109 LEU110 GLN111 GLU112 ILE113 TYR114 ASN115 SER116 ASN117 ASN118 GLN119 LYS120 ILE121 VAL122 ASN123 LEU124 LYS125 GLU126 LYS127 VAL128 ALA129 GLN130 LEU131 GLU132 ALA133 GLN134 CYS135 GLN136 GLU137 PRO138 CYS139 LYS140 ASP141 THR142 VAL143 GLN144 ILE145 HIS146 ASP147 ILE148 THR149 GLY150 LYS151 ASP152 CYS153 GLN154 ASP155 ILE156 ALA157 ASN158 LYS159 GLY160 ALA161 LYS162 GLN163 SER164 GLY165 LEU166 TYR167 PHE168 ILE169 LYS170 PRO171 LEU172 LYS173 ALA174 ASN175 GLN176 GLN177 PHE178 LEU179 VAL180 TYR181 CYS182 GLU183 ILE184 ASP185 GLY186 SER187 GLY188 ASN189 GLY190 TRP191 THR192 VAL193 PHE194 GLN195 LYS196 ARG197 LEU198 ASP199 GLY200 SER201 VAL202 ASP203 PHE204 LYS205 LYS206 ASN207 TRP208 ILE209 GLN210 TYR211 LYS212 GLU213 GLY214 PHE215 GLY216 HIS217 LEU218 SER219 PRO220 THR221 GLY222 THR223 THR224 GLU225 PHE226 TRP227 LEU228 GLY229 ASN230 GLU231 LYS232 ILE233 HIS234 LEU235 ILE236 SER237 THR238 GLN239 SER240 ALA241 ILE242 PRO243 TYR244 ALA245 LEU246 ARG247 VAL248 GLU249 LEU250 GLU251 ASP252 TRP253 ASN254 GLY255 ARG256 THR257 SER258 THR259 ALA260 ASP261 TYR262 ALA263 MET264 PHE265 LYS266 VAL267 GLY268 PRO269 GLU270 ALA271 ASP272 LYS273 TYR274 ARG275 LEU276 THR277 TYR278 ALA279 TYR280 PHE281 ALA282 GLY283 GLY284 ASP285 ALA286 GLY287 ASP288 ALA289 PHE290 ASP291 GLY292 PHE293 ASP294 PHE295 GLY296 ASP297 ASP298 PRO299 SER300 ASP301 LYS302 PHE303 PHE304 THR305 SER306 HIS307 ASN308 GLY309 MET310 GLN311 PHE312 SER313 THR314 TRP315 ASP316 ASN317 ASP318 ASN319 ASP320 LYS321 PHE322 GLU323 GLY324 ASN325 CYS326 ALA327 GLU328 GLN329 ASP330 GLY331 SER332 GLY333 TRP334 TRP335 MET336 ASN337 LYS338 CYS339 HIS340 ALA341 GLY342 HIS343 LEU344 ASN345 GLY346 VAL347 TYR348 TYR349 GLN350 GLY351 GLY352 THR353 TYR354 SER355 LYS356 ALA357 SER358 THR359 PRO360 ASN361 GLY362 TYR363 ASP364 ASN365 GLY366 ILE367 ILE368 TRP369 ALA370 THR371 TRP372 LYS373 THR374 ARG375 TRP376 TYR377 SER378 MET379 LYS380 LYS381 THR382 THR383 MET384 LYS385 ILE386 ILE387 PRO388 PHE389 ASN390 ARG391 LEU392 THR393
Unit 4 LEU135 LEU136 GLN137 LYS138 ASN139 VAL140 ARG141 ALA142 GLN143 LEU144 VAL145 ASP146 MET147 LYS148 ARG149 LEU150 GLU151 VAL152 ASP153 ILE154 ASP155 ILE156 LYS157 ILE158 ARG159 SER160 CYS161 ARG162 GLY163 SER164 CYS165 SER166 ARG167 ALA168 LEU169 ALA170 ARG171 GLU172 VAL173 ASP174 LEU175 LYS176 ASP177 TYR178 GLU179 ASP180 GLN181 GLN182 LYS183 GLN184 LEU185 GLU186 GLN187 VAL188
Unit 5 ASN164 LEU165 ARG166 VAL167 LEU168 ARG169 SER170 ILE171 LEU172 GLU173 ASN174 LEU175 ARG176 SER177 LYS178 ILE179 GLN180 LYS181 LEU182 GLU183 SER184 ASP185 VAL186 SER187 ALA188 GLN189 MET190 GLU191 TYR192 CYS193 ARG194 THR195 PRO196 CYS197 THR198 VAL199 SER200 CYS201 ASN202 ILE203 PRO204 VAL205 VAL206 SER207 GLY208 LYS209 GLU210 CYS211 GLU212 GLU213 ILE214 ILE215 ARG216 LYS217 GLY218 GLY219 GLU220 THR221 SER222 GLU223 MET224 TYR225 LEU226 ILE227 GLN228 PRO229 ASP230 SER231 SER232 VAL233 LYS234 PRO235 TYR236 ARG237 VAL238 TYR239 CYS240 ASP241 MET242 ASN243 THR244 GLU245 ASN246 GLY247 GLY248 TRP249 THR250 VAL251 ILE252 GLN253 ASN254 ARG255 GLN256 ASP257 GLY258 SER259 VAL260 ASP261 PHE262 GLY263 ARG264 LYS265 TRP266 ASP267 PRO268 TYR269 LYS270 GLN271 GLY272 PHE273 GLY274 ASN275 VAL276 ALA277 THR278 ASN279 THR280 ASP281 GLY282 LYS283 ASN284 TYR285 CYS286 GLY287 LEU288 PRO289 GLY290 GLU291 TYR292 TRP293 LEU294 GLY295 ASN296 ASP297 LYS298 ILE299 SER300 GLN301 LEU302 THR303 ARG304 MET305 GLY306 PRO307 THR308 GLU309 LEU310 LEU311 ILE312 GLU313 MET314 GLU315 ASP316 TRP317 LYS318 GLY319 ASP320 LYS321 VAL322 LYS323 ALA324 HIS325 TYR326 GLY327 GLY328 PHE329 THR330 VAL331 GLN332 ASN333 GLU334 ALA335 ASN336 LYS337 TYR338 GLN339 ILE340 SER341 VAL342 ASN343 LYS344 TYR345 ARG346 GLY347 THR348 ALA349 GLY350 ASN351 ALA352 LEU353 MET354 ASP355 GLY356 ALA357 SER358 GLN359 LEU360 MET361 GLY362 GLU363 ASN364 ARG365 THR366 MET367 THR368 ILE369 HIS370 ASN371 GLY372 MET373 PHE374 PHE375 SER376 THR377 TYR378 ASP379 ARG380 ASP381 ASN382 ASP383 GLY384 TRP385 LEU386 THR387 SER388 ASP389 PRO390 ARG391 LYS392 GLN393 CYS394 SER395 LYS396 GLU397 ASP398 GLY399 GLY400 GLY401 TRP402 TRP403 TYR404 ASN405 ARG406 CYS407 HIS408 ALA409 ALA410 ASN411 PRO412 ASN413 GLY414 ARG415 TYR416 TYR417 TRP418 GLY419 GLY420 GLN421 TYR422 THR423 TRP424 ASP425 MET426 ALA427 LYS428 HIS429 GLY430 THR431 ASP432 ASP433 GLY434 VAL435 VAL436 TRP437 MET438 ASN439 TRP440 LYS441 GLY442 SER443 TRP444 TYR445 SER446 MET447 ARG448 LYS449 MET450 SER451 MET452 LYS453 ILE454 ARG455 PRO456 PHE457 PHE458 PRO459
Unit 6 TYR109 LEU110 GLN111 GLU112 ILE113 TYR114 ASN115 SER116 ASN117 ASN118 GLN119 LYS120 ILE121 VAL122 ASN123 LEU124 LYS125 GLU126 LYS127 VAL128 ALA129 GLN130 LEU131 GLU132 ALA133 GLN134 CYS135 GLN136 GLU137 PRO138 CYS139 LYS140 ASP141 THR142 VAL143 GLN144 ILE145 HIS146 ASP147 ILE148 THR149 GLY150 LYS151 ASP152 CYS153 GLN154 ASP155 ILE156 ALA157 ASN158 LYS159 GLY160 ALA161 LYS162 GLN163 SER164 GLY165 LEU166 TYR167 PHE168 ILE169 LYS170 PRO171 LEU172 LYS173 ALA174 ASN175 GLN176 GLN177 PHE178 LEU179 VAL180 TYR181 CYS182 GLU183 ILE184 ASP185 GLY186 SER187 GLY188 ASN189 GLY190 TRP191 THR192 VAL193 PHE194 GLN195 LYS196 ARG197 LEU198 ASP199 GLY200 SER201 VAL202 ASP203 PHE204 LYS205 LYS206 ASN207 TRP208 ILE209 GLN210 TYR211 LYS212 GLU213 GLY214 PHE215 GLY216 HIS217 LEU218 SER219 PRO220 THR221 GLY222 THR223 THR224 GLU225 PHE226 TRP227 LEU228 GLY229 ASN230 GLU231 LYS232 ILE233 HIS234 LEU235 ILE236 SER237 THR238 GLN239 SER240 ALA241 ILE242 PRO243 TYR244 ALA245 LEU246 ARG247 VAL248 GLU249 LEU250 GLU251 ASP252 TRP253 ASN254 GLY255 ARG256 THR257 SER258 THR259 ALA260 ASP261 TYR262 ALA263 MET264 PHE265 LYS266 VAL267 GLY268 PRO269 GLU270 ALA271 ASP272 LYS273 TYR274 ARG275 LEU276 THR277 TYR278 ALA279 TYR280 PHE281 ALA282 GLY283 GLY284 ASP285 ALA286 GLY287 ASP288 ALA289 PHE290 ASP291 GLY292 PHE293 ASP294 PHE295 GLY296 ASP297 ASP298 PRO299 SER300 ASP301 LYS302 PHE303 PHE304 THR305 SER306 HIS307 ASN308 GLY309 MET310 GLN311 PHE312 SER313 THR314 TRP315 ASP316 ASN317 ASP318 ASN319 ASP320 LYS321 PHE322 GLU323 GLY324 ASN325 CYS326 ALA327 GLU328 GLN329 ASP330 GLY331 SER332 GLY333 TRP334 TRP335 MET336 ASN337 LYS338 CYS339 HIS340 ALA341 GLY342 HIS343 LEU344 ASN345 GLY346 VAL347 TYR348 TYR349 GLN350 GLY351 GLY352 THR353 TYR354 SER355 LYS356 ALA357 SER358 THR359 PRO360 ASN361 GLY362 TYR363 ASP364 ASN365 GLY366 ILE367 ILE368 TRP369 ALA370 THR371 TRP372 LYS373 THR374 ARG375 TRP376 TYR377 SER378 MET379 LYS380 LYS381 THR382 THR383 MET384 LYS385 ILE386 ILE387 PRO388 PHE389 ASN390 ARG391 LEU392 THR393
Unit 7 GLY1 HIS2 ARG3 PRO4
Unit 8 GLY1 HIS2 ARG3 PRO4
Unit 9 GLY1 HIS2 ARG3 PRO4
Unit 10 GLY1 HIS2 ARG3 PRO4
Ligands
Unit 11 CA2 NAG470
Unit 12 CA1 CA4
Unit 13 CA2 CA3 NAG470
Unit 14 CA1
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany