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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HETEROTRIMERIC COMPLEX OF THE RGS D RGS9, THE GAMMA SUBUNIT OF PHOSPHODIESTERASE AND THE GT/I1 ALPHA SUBUNIT [(RGS9)-(PDEGAMMA)-(GT/I1ALPHA)-(GDP)-(ALF4-)
Keywords RGS9, TRANSDUCIN, EFFECTOR, PDEGAMMA, G PROTEIN, PHOTOTRANSD ROD, RGS, PHOSPHODIESTERASE, GAP, SIGNALING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1FQJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT A GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1,GUA NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-1REGULATOR OF G-PROTEIN SIGNALING 9  A 317 2555 0
2  Protein   GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT A GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1,GUA NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-1REGULATOR OF G-PROTEIN SIGNALING 9  B 133 1111 0
3  Protein   RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE SUBUNIT GAMMA  C 38 297 0
4  Protein   GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT A GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1,GUA NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-1REGULATOR OF G-PROTEIN SIGNALING 9  D 315 2539 0
5  Protein   GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT A GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1,GUA NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-1REGULATOR OF G-PROTEIN SIGNALING 9  E 141 1181 0
6  Ligand   GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT A GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1,GUA NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-1REGULATOR OF G-PROTEIN SIGNALING 9  A 3 0 34
7  Ligand   GUANINE NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT A GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1,GUA NUCLEOTIDE-BINDING PROTEIN G(T) SUBUNIT ALPHA-1REGULATOR OF G-PROTEIN SIGNALING 9  D 3 0 34
8 Water     356 0 356
total       1306 7683 424
Proteins
Unit 1 ARG28 THR29 VAL30 LYS31 LEU32 LEU33 LEU34 LEU35 GLY36 ALA37 GLY38 GLU39 SER40 GLY41 LYS42 SER43 THR44 ILE45 VAL46 LYS47 GLN48 MET49 LYS50 ILE51 ILE52 HIS53 GLN54 ASP55 GLY56 TYR57 SER58 LEU59 GLU60 GLU61 CYS62 LEU63 GLU64 PHE65 ILE66 ALA67 ILE68 ILE69 TYR70 GLY71 ASN72 THR73 LEU74 GLN75 SER76 ILE77 LEU78 ALA79 ILE80 VAL81 ARG82 ALA83 MET84 THR85 THR86 LEU87 ASN88 ILE89 GLN90 TYR91 GLY92 ASP93 SER94 ALA95 ARG96 GLN97 ASP98 ASP99 ALA100 ARG101 LYS102 LEU103 MET104 HIS105 MET106 ALA107 ASP108 THR109 ILE110 GLU111 GLU112 GLY113 THR114 MET115 PRO116 LYS117 GLU118 MET119 SER120 ASP121 ILE122 ILE123 GLN124 ARG125 LEU126 TRP127 LYS128 ASP129 SER130 GLY131 ILE132 GLN133 ALA134 CYS135 PHE136 ASP137 ARG138 ALA139 SER140 GLU141 TYR142 GLN143 LEU144 ASN145 ASP146 SER147 ALA148 GLY149 TYR150 TYR151 LEU152 SER153 ASP154 LEU155 GLU156 ARG157 LEU158 VAL159 THR160 PRO161 GLY162 TYR163 VAL164 PRO165 THR166 GLU167 GLN168 ASP169 VAL170 LEU171 ARG172 SER173 ARG174 VAL175 LYS176 THR177 THR178 GLY179 ILE180 ILE181 GLU182 THR183 GLN184 PHE185 SER186 PHE187 LYS188 ASP189 LEU190 ASN191 PHE192 ARG193 MET194 PHE195 ASP196 VAL197 GLY198 GLY199 GLN200 ARG201 SER202 GLU203 ARG204 LYS205 LYS206 TRP207 ILE208 HIS209 CYS210 PHE211 GLU212 GLY213 VAL214 THR215 ALA216 ILE217 ILE218 PHE219 CYS220 VAL221 ALA222 LEU223 SER224 ASP225 TYR226 ASP227 LEU228 VAL229 LEU230 ALA231 GLU232 ASP233 GLU234 GLU235 MET236 ASN237 ARG238 MET239 HIS240 GLU241 SER242 MET243 LYS244 LEU245 PHE246 ASP247 SER248 ILE249 CYS250 ASN251 ASN252 LYS253 TRP254 PHE255 THR256 ASP257 THR258 SER259 ILE260 ILE261 LEU262 PHE263 LEU264 ASN265 LYS266 LYS267 ASP268 LEU269 PHE270 GLU271 GLU272 LYS273 ILE274 LYS275 LYS276 SER277 PRO278 LEU279 THR280 ILE281 CYS282 TYR283 PRO284 GLU285 TYR286 ALA287 GLY288 SER289 ASN290 THR291 TYR292 GLU293 GLU294 ALA295 GLY296 ASN297 TYR298 ILE299 LYS300 VAL301 GLN302 PHE303 LEU304 GLU305 LEU306 ASN307 MET308 ARG309 ARG310 ASP311 VAL312 LYS313 GLU314 ILE315 TYR316 SER317 HIS318 MET319 THR320 CYS321 ALA322 THR323 ASP324 THR325 GLN326 ASN327 VAL328 LYS329 PHE330 VAL331 PHE332 ASP333 ALA334 VAL335 THR336 ASP337 ILE338 ILE339 ILE340 LYS341 GLU342 ASN343 LEU344
Unit 2 ASP286 ILE287 PRO288 THR289 LYS290 MET291 ARG292 VAL293 GLU294 ARG295 TRP296 ALA297 PHE298 ASN299 PHE300 SER301 GLU302 LEU303 ILE304 ARG305 ASP306 PRO307 LYS308 GLY309 ARG310 GLN311 SER312 PHE313 GLN314 HIS315 PHE316 LEU317 ARG318 LYS319 GLU320 PHE321 SER322 GLY323 GLU324 ASN325 LEU326 GLY327 PHE328 TRP329 GLU330 ALA331 CYS332 GLU333 ASP334 LEU335 LYS336 TYR337 GLY338 ASP339 GLN340 SER341 LYS342 VAL343 LYS344 GLU345 LYS346 ALA347 GLU348 GLU349 ILE350 TYR351 LYS352 LEU353 PHE354 LEU355 ALA356 PRO357 GLY358 ALA359 ARG360 ARG361 TRP362 ILE363 ASN364 ILE365 ASP366 GLY367 LYS368 THR369 MET370 ASP371 ILE372 THR373 VAL374 LYS375 GLY376 LEU377 LYS378 HIS379 PRO380 HIS381 ARG382 TYR383 VAL384 LEU385 ASP386 ALA387 ALA388 GLN389 THR390 HIS391 ILE392 TYR393 MET394 LEU395 MET396 LYS397 LYS398 ASP399 SER400 TYR401 ALA402 ARG403 TYR404 LEU405 LYS406 SER407 PRO408 ILE409 TYR410 LYS411 GLU412 MET413 LEU414 ALA415 LYS416 ALA417 ILE418
Unit 3 PHE50 GLY51 ASP52 ASP53 ILE54 PRO55 GLY56 MET57 GLU58 GLY59 LEU60 GLY61 THR62 ASP63 ILE64 THR65 VAL66 ILE67 CYS68 PRO69 TRP70 GLU71 ALA72 PHE73 ASN74 HIS75 LEU76 GLU77 LEU78 HIS79 GLU80 LEU81 ALA82 GLN83 TYR84 GLY85 ILE86 ILE87
Unit 4 ARG28 THR29 VAL30 LYS31 LEU32 LEU33 LEU34 LEU35 GLY36 ALA37 GLY38 GLU39 SER40 GLY41 LYS42 SER43 THR44 ILE45 VAL46 LYS47 GLN48 MET49 LYS50 ILE51 ILE52 HIS53 GLN54 ASP55 GLY56 TYR57 SER58 LEU59 GLU60 GLU61 CYS62 LEU63 GLU64 PHE65 ILE66 ALA67 ILE68 ILE69 TYR70 GLY71 ASN72 THR73 LEU74 GLN75 SER76 ILE77 LEU78 ALA79 ILE80 VAL81 ARG82 ALA83 MET84 THR85 THR86 LEU87 ASN88 ILE89 GLN90 TYR91 GLY92 ASP93 SER94 ALA95 ARG96 GLN97 ASP98 ASP99 ALA100 ARG101 LYS102 LEU103 MET104 HIS105 MET106 ALA107 ASP108 THR109 ILE110 GLU111 GLU112 GLY113 THR114 MET115 PRO116 LYS117 GLU118 MET119 SER120 ASP121 ILE122 ILE123 GLN124 ARG125 LEU126 TRP127 LYS128 ASP129 SER130 GLY131 ILE132 GLN133 ALA134 CYS135 PHE136 ASP137 ARG138 ALA139 SER140 GLU141 TYR142 GLN143 LEU144 ASN145 ASP146 SER147 ALA148 GLY149 TYR150 TYR151 LEU152 SER153 ASP154 LEU155 GLU156 ARG157 LEU158 VAL159 THR160 PRO161 GLY162 TYR163 VAL164 PRO165 THR166 GLU167 GLN168 ASP169 VAL170 LEU171 ARG172 SER173 ARG174 VAL175 LYS176 THR177 THR178 GLY179 ILE180 ILE181 GLU182 THR183 GLN184 PHE185 SER186 PHE187 LYS188 ASP189 LEU190 ASN191 PHE192 ARG193 MET194 PHE195 ASP196 VAL197 GLY198 GLY199 GLN200 ARG201 SER202 GLU203 ARG204 LYS205 LYS206 TRP207 ILE208 HIS209 CYS210 PHE211 GLU212 GLY213 VAL214 THR215 ALA216 ILE217 ILE218 PHE219 CYS220 VAL221 ALA222 LEU223 SER224 ASP225 TYR226 ASP227 LEU228 VAL229 LEU230 ALA231 GLU232 ASP233 GLU234 GLU235 MET236 ASN237 ARG238 MET239 HIS240 GLU241 SER242 MET243 LYS244 LEU245 PHE246 ASP247 SER248 ILE249 CYS250 ASN251 ASN252 LYS253 TRP254 PHE255 THR256 ASP257 THR258 SER259 ILE260 ILE261 LEU262 PHE263 LEU264 ASN265 LYS266 LYS267 ASP268 LEU269 PHE270 GLU271 GLU272 LYS273 ILE274 LYS275 LYS276 SER277 PRO278 LEU279 THR280 ILE281 CYS282 TYR283 PRO284 GLU285 TYR286 ALA287 GLY288 SER289 ASN290 THR291 TYR292 GLU293 GLU294 ALA295 GLY296 ASN297 TYR298 ILE299 LYS300 VAL301 GLN302 PHE303 LEU304 GLU305 LEU306 ASN307 MET308 ARG309 ARG310 ASP311 VAL312 LYS313 GLU314 ILE315 TYR316 SER317 HIS318 MET319 THR320 CYS321 ALA322 THR323 ASP324 THR325 GLN326 ASN327 VAL328 LYS329 PHE330 VAL331 PHE332 ASP333 ALA334 VAL335 THR336 ASP337 ILE338 ILE339 ILE340 LYS341 GLU342
Unit 5 PHE277 TRP278 ASP279 LEU280 ASN281 ALA282 LYS283 LEU284 VAL285 ASP286 ILE287 PRO288 THR289 LYS290 MET291 ARG292 VAL293 GLU294 ARG295 TRP296 ALA297 PHE298 ASN299 PHE300 SER301 GLU302 LEU303 ILE304 ARG305 ASP306 PRO307 LYS308 GLY309 ARG310 GLN311 SER312 PHE313 GLN314 HIS315 PHE316 LEU317 ARG318 LYS319 GLU320 PHE321 SER322 GLY323 GLU324 ASN325 LEU326 GLY327 PHE328 TRP329 GLU330 ALA331 CYS332 GLU333 ASP334 LEU335 LYS336 TYR337 GLY338 ASP339 GLN340 SER341 LYS342 VAL343 LYS344 GLU345 LYS346 ALA347 GLU348 GLU349 ILE350 TYR351 LYS352 LEU353 PHE354 LEU355 ALA356 PRO357 GLY358 ALA359 ARG360 ARG361 TRP362 ILE363 ASN364 ILE365 ASP366 GLY367 LYS368 THR369 MET370 ASP371 ILE372 THR373 VAL374 LYS375 GLY376 LEU377 LYS378 HIS379 PRO380 HIS381 ARG382 TYR383 VAL384 LEU385 ASP386 ALA387 ALA388 GLN389 THR390 HIS391 ILE392 TYR393 MET394 LEU395 MET396 LYS397 LYS398 ASP399 SER400 TYR401 ALA402 ARG403 TYR404 LEU405 LYS406 SER407 PRO408 ILE409 TYR410 LYS411 GLU412 MET413 LEU414 ALA415 LYS416 ALA417
Ligands
Unit 6 MG352 GDP360 ALF362
Unit 7 MG352 GDP361 ALF363
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany