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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE VON WILLEBRAND FACTOR A3 DOMAIN IN WITH A FAB FRAGMENT OF IGG RU5 THAT INHIBITS COLLAGEN BINDI
Keywords COLLAGEN BINDING, CONFORMATIONAL CHANGES, EPITOPE, VON WILLE FACTOR A-TYPE DOMAIN, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1FE8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VON WILLEBRAND FACTOR  A 190 1389 32
2  Protein   IMMUNOGLOBULIN IGG RU5  H 210 1578 0
3  Protein   IMMUNOGLOBULIN IGG RU5  L 211 1629 0
4  Protein   VON WILLEBRAND FACTOR  B 190 1389 32
5  Protein   IMMUNOGLOBULIN IGG RU5  I 210 1578 0
6  Protein   IMMUNOGLOBULIN IGG RU5  M 211 1629 0
7  Protein   VON WILLEBRAND FACTOR  C 191 1394 32
8  Protein   IMMUNOGLOBULIN IGG RU5  J 210 1578 0
9  Protein   IMMUNOGLOBULIN IGG RU5  N 211 1629 0
10  Ligand    D 2 0 24
11  Ligand    E 2 0 24
12  Ligand    F 2 0 24
13  Ligand   IMMUNOGLOBULIN IGG RU5  H 1 0 14
14  Ligand   IMMUNOGLOBULIN IGG RU5  L 1 0 5
15  Ligand   IMMUNOGLOBULIN IGG RU5  I 1 0 14
16 Water     878 0 878
total       2721 13793 1079
Proteins
Unit 1 PRO921 ASP922 CYS923 SER924 GLN925 PRO926 LEU927 ASP928 VAL929 ILE930 LEU931 LEU932 LEU933 ASP934 GLY935 SER936 SER937 SER938 PHE939 PRO940 ALA941 SER942 TYR943 PHE944 ASP945 GLU946 MSE947 LYS948 SER949 PHE950 ALA951 LYS952 ALA953 PHE954 ILE955 SER956 LYS957 ALA958 ASN959 ILE960 GLY961 PRO962 ARG963 LEU964 THR965 GLN966 VAL967 SER968 VAL969 LEU970 GLN971 TYR972 GLY973 SER974 ILE975 THR976 THR977 ILE978 ASP979 VAL980 PRO981 TRP982 ASN983 VAL984 VAL985 PRO986 GLU987 LYS988 ALA989 HIS990 LEU991 LEU992 SER993 LEU994 VAL995 ASP996 VAL997 MSE998 GLN999 ARG1000 GLU1001 GLY1002 GLY1003 PRO1004 SER1005 GLN1006 ILE1007 GLY1008 ASP1009 ALA1010 LEU1011 GLY1012 PHE1013 ALA1014 VAL1015 ARG1016 TYR1017 LEU1018 THR1019 SER1020 GLU1021 MSE1022 HIS1023 GLY1024 ALA1025 ARG1026 PRO1027 GLY1028 ALA1029 SER1030 LYS1031 ALA1032 VAL1033 VAL1034 ILE1035 LEU1036 VAL1037 THR1038 ASP1039 VAL1040 SER1041 VAL1042 ASP1043 SER1044 VAL1045 ASP1046 ALA1047 ALA1048 ALA1049 ASP1050 ALA1051 ALA1052 ARG1053 SER1054 ASN1055 ARG1056 VAL1057 THR1058 VAL1059 PHE1060 PRO1061 ILE1062 GLY1063 ILE1064 GLY1065 ASP1066 ARG1067 TYR1068 ASP1069 ALA1070 ALA1071 GLN1072 LEU1073 ARG1074 ILE1075 LEU1076 ALA1077 GLY1078 PRO1079 ALA1080 GLY1081 ASP1082 SER1083 ASN1084 VAL1085 VAL1086 LYS1087 LEU1088 GLN1089 ARG1090 ILE1091 GLU1092 ASP1093 LEU1094 PRO1095 THR1096 MSE1097 VAL1098 THR1099 LEU1100 GLY1101 ASN1102 SER1103 PHE1104 LEU1105 HIS1106 LYS1107 LEU1108 CYS1109 SER1110
Unit 2 ASP1 VAL2 LYS3 LEU4 VAL5 GLN6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 ALA13 PRO14 SER15 GLN16 SER17 LEU18 SER19 ILE20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 THR30 THR31 TYR32 GLY33 VAL34 SER35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 GLY53 ASP54 GLY55 ASN56 THR57 THR58 TYR59 HIS60 SER61 ALA62 LEU63 ILE64 SER65 ARG66 LEU67 SER68 ILE69 SER70 LYS71 ASP72 ASN73 SER74 ARG75 SER76 GLN77 VAL78 PHE79 LEU80 LYS81 LEU82 ASN83 SER84 LEU85 HIS86 THR87 ASP88 ASP89 THR90 ALA91 THR92 TYR93 TYR94 CYS95 ALA96 GLY97 ASN98 TYR99 TYR100 GLY101 MET102 ASP103 TYR104 TRP105 GLY106 GLN107 GLY108 THR109 SER110 VAL111 THR112 VAL113 SER114 SER115 ALA116 GLU117 THR118 THR119 ALA120 PRO121 SER122 VAL123 TYR124 LYS125 LEU126 GLU127 PRO128 VAL129 SER136 SER137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 LEU154 THR155 TRP156 ASN157 SER158 GLY159 SER160 LEU161 SER162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 ASP175 LEU176 TYR177 THR178 LEU179 SER180 SER181 SER182 VAL183 THR184 VAL185 THR186 SER187 SER188 THR189 TRP190 PRO191 SER192 GLN193 SER194 ILE195 THR196 CYS197 ASN198 VAL199 ALA200 HIS201 PRO202 ALA203 SER204 SER205 THR206 LYS207 VAL208 ASP209 LYS210 LYS211 ILE212 GLU213 PRO214 ARG215 GLY216
Unit 3 ASP1 ILE2 ALA3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 GLN17 LYS18 VAL19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 GLY30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 ARG45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 SER80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 ASN90 GLY91 GLY92 THR93 ASN94 PRO95 TRP96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 VAL106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 THR115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 4 PRO921 ASP922 CYS923 SER924 GLN925 PRO926 LEU927 ASP928 VAL929 ILE930 LEU931 LEU932 LEU933 ASP934 GLY935 SER936 SER937 SER938 PHE939 PRO940 ALA941 SER942 TYR943 PHE944 ASP945 GLU946 MSE947 LYS948 SER949 PHE950 ALA951 LYS952 ALA953 PHE954 ILE955 SER956 LYS957 ALA958 ASN959 ILE960 GLY961 PRO962 ARG963 LEU964 THR965 GLN966 VAL967 SER968 VAL969 LEU970 GLN971 TYR972 GLY973 SER974 ILE975 THR976 THR977 ILE978 ASP979 VAL980 PRO981 TRP982 ASN983 VAL984 VAL985 PRO986 GLU987 LYS988 ALA989 HIS990 LEU991 LEU992 SER993 LEU994 VAL995 ASP996 VAL997 MSE998 GLN999 ARG1000 GLU1001 GLY1002 GLY1003 PRO1004 SER1005 GLN1006 ILE1007 GLY1008 ASP1009 ALA1010 LEU1011 GLY1012 PHE1013 ALA1014 VAL1015 ARG1016 TYR1017 LEU1018 THR1019 SER1020 GLU1021 MSE1022 HIS1023 GLY1024 ALA1025 ARG1026 PRO1027 GLY1028 ALA1029 SER1030 LYS1031 ALA1032 VAL1033 VAL1034 ILE1035 LEU1036 VAL1037 THR1038 ASP1039 VAL1040 SER1041 VAL1042 ASP1043 SER1044 VAL1045 ASP1046 ALA1047 ALA1048 ALA1049 ASP1050 ALA1051 ALA1052 ARG1053 SER1054 ASN1055 ARG1056 VAL1057 THR1058 VAL1059 PHE1060 PRO1061 ILE1062 GLY1063 ILE1064 GLY1065 ASP1066 ARG1067 TYR1068 ASP1069 ALA1070 ALA1071 GLN1072 LEU1073 ARG1074 ILE1075 LEU1076 ALA1077 GLY1078 PRO1079 ALA1080 GLY1081 ASP1082 SER1083 ASN1084 VAL1085 VAL1086 LYS1087 LEU1088 GLN1089 ARG1090 ILE1091 GLU1092 ASP1093 LEU1094 PRO1095 THR1096 MSE1097 VAL1098 THR1099 LEU1100 GLY1101 ASN1102 SER1103 PHE1104 LEU1105 HIS1106 LYS1107 LEU1108 CYS1109 SER1110
Unit 5 ASP1 VAL2 LYS3 LEU4 VAL5 GLN6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 ALA13 PRO14 SER15 GLN16 SER17 LEU18 SER19 ILE20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 THR30 THR31 TYR32 GLY33 VAL34 SER35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 GLY53 ASP54 GLY55 ASN56 THR57 THR58 TYR59 HIS60 SER61 ALA62 LEU63 ILE64 SER65 ARG66 LEU67 SER68 ILE69 SER70 LYS71 ASP72 ASN73 SER74 ARG75 SER76 GLN77 VAL78 PHE79 LEU80 LYS81 LEU82 ASN83 SER84 LEU85 HIS86 THR87 ASP88 ASP89 THR90 ALA91 THR92 TYR93 TYR94 CYS95 ALA96 GLY97 ASN98 TYR99 TYR100 GLY101 MET102 ASP103 TYR104 TRP105 GLY106 GLN107 GLY108 THR109 SER110 VAL111 THR112 VAL113 SER114 SER115 ALA116 GLU117 THR118 THR119 ALA120 PRO121 SER122 VAL123 TYR124 LYS125 LEU126 GLU127 PRO128 VAL129 SER136 SER137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 LEU154 THR155 TRP156 ASN157 SER158 GLY159 SER160 LEU161 SER162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 ASP175 LEU176 TYR177 THR178 LEU179 SER180 SER181 SER182 VAL183 THR184 VAL185 THR186 SER187 SER188 THR189 TRP190 PRO191 SER192 GLN193 SER194 ILE195 THR196 CYS197 ASN198 VAL199 ALA200 HIS201 PRO202 ALA203 SER204 SER205 THR206 LYS207 VAL208 ASP209 LYS210 LYS211 ILE212 GLU213 PRO214 ARG215 GLY216
Unit 6 ASP1 ILE2 ALA3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 GLN17 LYS18 VAL19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 GLY30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 ARG45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 SER80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 ASN90 GLY91 GLY92 THR93 ASN94 PRO95 TRP96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 VAL106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 THR115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 7 ALA920 PRO921 ASP922 CYS923 SER924 GLN925 PRO926 LEU927 ASP928 VAL929 ILE930 LEU931 LEU932 LEU933 ASP934 GLY935 SER936 SER937 SER938 PHE939 PRO940 ALA941 SER942 TYR943 PHE944 ASP945 GLU946 MSE947 LYS948 SER949 PHE950 ALA951 LYS952 ALA953 PHE954 ILE955 SER956 LYS957 ALA958 ASN959 ILE960 GLY961 PRO962 ARG963 LEU964 THR965 GLN966 VAL967 SER968 VAL969 LEU970 GLN971 TYR972 GLY973 SER974 ILE975 THR976 THR977 ILE978 ASP979 VAL980 PRO981 TRP982 ASN983 VAL984 VAL985 PRO986 GLU987 LYS988 ALA989 HIS990 LEU991 LEU992 SER993 LEU994 VAL995 ASP996 VAL997 MSE998 GLN999 ARG1000 GLU1001 GLY1002 GLY1003 PRO1004 SER1005 GLN1006 ILE1007 GLY1008 ASP1009 ALA1010 LEU1011 GLY1012 PHE1013 ALA1014 VAL1015 ARG1016 TYR1017 LEU1018 THR1019 SER1020 GLU1021 MSE1022 HIS1023 GLY1024 ALA1025 ARG1026 PRO1027 GLY1028 ALA1029 SER1030 LYS1031 ALA1032 VAL1033 VAL1034 ILE1035 LEU1036 VAL1037 THR1038 ASP1039 VAL1040 SER1041 VAL1042 ASP1043 SER1044 VAL1045 ASP1046 ALA1047 ALA1048 ALA1049 ASP1050 ALA1051 ALA1052 ARG1053 SER1054 ASN1055 ARG1056 VAL1057 THR1058 VAL1059 PHE1060 PRO1061 ILE1062 GLY1063 ILE1064 GLY1065 ASP1066 ARG1067 TYR1068 ASP1069 ALA1070 ALA1071 GLN1072 LEU1073 ARG1074 ILE1075 LEU1076 ALA1077 GLY1078 PRO1079 ALA1080 GLY1081 ASP1082 SER1083 ASN1084 VAL1085 VAL1086 LYS1087 LEU1088 GLN1089 ARG1090 ILE1091 GLU1092 ASP1093 LEU1094 PRO1095 THR1096 MSE1097 VAL1098 THR1099 LEU1100 GLY1101 ASN1102 SER1103 PHE1104 LEU1105 HIS1106 LYS1107 LEU1108 CYS1109 SER1110
Unit 8 ASP1 VAL2 LYS3 LEU4 VAL5 GLN6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 ALA13 PRO14 SER15 GLN16 SER17 LEU18 SER19 ILE20 THR21 CYS22 THR23 VAL24 SER25 GLY26 PHE27 SER28 LEU29 THR30 THR31 TYR32 GLY33 VAL34 SER35 TRP36 VAL37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 LEU48 GLY49 VAL50 ILE51 TRP52 GLY53 ASP54 GLY55 ASN56 THR57 THR58 TYR59 HIS60 SER61 ALA62 LEU63 ILE64 SER65 ARG66 LEU67 SER68 ILE69 SER70 LYS71 ASP72 ASN73 SER74 ARG75 SER76 GLN77 VAL78 PHE79 LEU80 LYS81 LEU82 ASN83 SER84 LEU85 HIS86 THR87 ASP88 ASP89 THR90 ALA91 THR92 TYR93 TYR94 CYS95 ALA96 GLY97 ASN98 TYR99 TYR100 GLY101 MET102 ASP103 TYR104 TRP105 GLY106 GLN107 GLY108 THR109 SER110 VAL111 THR112 VAL113 SER114 SER115 ALA116 GLU117 THR118 THR119 ALA120 PRO121 SER122 VAL123 TYR124 LYS125 LEU126 GLU127 PRO128 VAL129 SER136 SER137 VAL138 THR139 LEU140 GLY141 CYS142 LEU143 VAL144 LYS145 GLY146 TYR147 PHE148 PRO149 GLU150 PRO151 VAL152 THR153 LEU154 THR155 TRP156 ASN157 SER158 GLY159 SER160 LEU161 SER162 SER163 GLY164 VAL165 HIS166 THR167 PHE168 PRO169 ALA170 VAL171 LEU172 GLN173 SER174 ASP175 LEU176 TYR177 THR178 LEU179 SER180 SER181 SER182 VAL183 THR184 VAL185 THR186 SER187 SER188 THR189 TRP190 PRO191 SER192 GLN193 SER194 ILE195 THR196 CYS197 ASN198 VAL199 ALA200 HIS201 PRO202 ALA203 SER204 SER205 THR206 LYS207 VAL208 ASP209 LYS210 LYS211 ILE212 GLU213 PRO214 ARG215 GLY216
Unit 9 ASP1 ILE2 ALA3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 GLN17 LYS18 VAL19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 GLY30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 ARG45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 SER80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 ASN90 GLY91 GLY92 THR93 ASN94 PRO95 TRP96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 VAL106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 THR115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211
Ligands
Unit 10 NAG1 FUC2
Unit 11 NAG1 FUC2
Unit 12 NAG1 FUC2
Unit 13 NAG553
Unit 14 CAC1001
Unit 15 NAG553
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany