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Sequence, Chains, Asymmetric and Biological Units

Title CASPASE-8 SPECIFICITY PROBED AT SUBSITE S4: CRYSTAL STRUCTUR CASPASE-8-Z-DEVD-CHO
Keywords CYSTEINE PROTEASE, CASPASE-8, FLICE, MCH5, MACH, APOPTOSIS, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1F9E     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CASPASE-8 ALPHA CHAIN  A 153 1220 0
2  Protein   CASPASE-8 BETA CHAIN  B 89 718 0
3  Protein   (PHQ)DEVD  Q 5 24 18
4  Protein   CASPASE-8 ALPHA CHAIN  C 153 1220 0
5  Protein   CASPASE-8 BETA CHAIN  D 89 718 0
6  Protein   (PHQ)DEVD  R 5 24 18
7  Protein   CASPASE-8 ALPHA CHAIN  E 153 1220 0
8  Protein   CASPASE-8 BETA CHAIN  F 89 717 0
9  Protein   (PHQ)DEVD  S 5 24 18
10  Protein   CASPASE-8 ALPHA CHAIN  G 153 1220 0
11  Protein   CASPASE-8 BETA CHAIN  H 89 718 0
12  Protein   (PHQ)DEVD  T 5 24 18
13  Protein   CASPASE-8 ALPHA CHAIN  I 153 1220 0
14  Protein   CASPASE-8 BETA CHAIN  J 89 718 0
15  Protein   (PHQ)DEVD  U 5 24 18
16  Protein   CASPASE-8 ALPHA CHAIN  K 153 1220 0
17  Protein   CASPASE-8 BETA CHAIN  L 89 718 0
18  Protein   (PHQ)DEVD  V 5 24 18
19 Water     47 0 47
total       1529 11771 155
Proteins
Unit 1 LEU149 ASP150 LYS151 VAL152 TYR153 GLN154 MET155 LYS156 SER157 LYS160 PRO161 ARG162 GLY163 TYR164 CYS165 LEU166 ILE167 ILE168 ASN169 ASN170 HIS171 ASN172 PHE173 ALA174 LYS175 ALA175A ARG175B GLU175C LYS175D VAL175E PRO175F LYS175G LEU175H HIS175I SER175J ILE176 ARG177 ASP178 ARG179 ASN180 GLY181 THR182 HIS183 LEU184 ASP185 ALA186 GLY187 ALA188 LEU189 THR190 THR191 THR192 PHE193 GLU194 GLU195 LEU196 HIS197 PHE198 GLU199 ILE200 LYS201 PRO202 HIS203 HIS204 ASP205 CYS206 THR207 VAL208 GLU209 GLN210 ILE211 TYR212 GLU213 ILE214 LEU215 LYS216 ILE217 TYR218 GLN219 LEU220 MET221 ASP222 HIS224 SER225 ASN226 MET227 ASP228 CYS229 PHE230 ILE231 CYS232 CYS233 ILE234 LEU235 SER236 HIS237 GLY238 ASP239 LYS240 GLY241 ILE242 ILE243 TYR244 GLY245 THR246 ASP247 GLY248 GLN254 GLU255 ALA256 PRO257 ILE258 TYR259 GLU260 LEU261 THR262 SER263 GLN264 PHE265 THR266 GLY267 LEU268 LYS269 CYS270 PRO271 SER272 LEU273 ALA274 GLY275 LYS276 PRO277 LYS278 VAL279 PHE280 PHE281 ILE282 GLN283 ALA284 CYS285 GLN286 GLY287 ASP288 ASN289 TYR290 GLN291 LYS292 GLY293 ILE294 PRO295 VAL296 GLU297 THR298 ASP299
Unit 2 THR318 ARG319 TYR320 ILE321 PRO322 ASP323 GLU324 ALA325 ASP326 PHE327 LEU328 LEU329 GLY330 MET331 ALA332 THR333 VAL334 ASN335 ASN336 CYS337 VAL338 SER339 TYR340 ARG341 ASN342 PRO343 ALA344 GLU345 GLY346 THR347 TRP348 TYR349 ILE350 GLN351 SER352 LEU353 CYS354 GLN355 SER356 LEU357 ARG358 GLU359 ARG360 CYS361 PRO362 ARG362B GLY363 ASP364 ASP365 ILE366 LEU367 THR368 ILE369 LEU370 THR371 GLU372 VAL373 ASN374 TYR375 GLU376 VAL377 SER378 ASN379 LYS381 ASP381A ASP381B LYS381C LYS381D ASN381E MET382 GLY383 LYS384 GLN385 MET386 PRO387 GLN388 PRO389 THR390 PHE392 THR393 LEU394 ARG395 LYS396 LYS397 LEU398 VAL399 PHE400 PRO401 SER402
Unit 3 PHQ4100 ASP4101 GLU4102 VAL4103 ASA4104
Unit 4 LEU149 ASP150 LYS151 VAL152 TYR153 GLN154 MET155 LYS156 SER157 LYS160 PRO161 ARG162 GLY163 TYR164 CYS165 LEU166 ILE167 ILE168 ASN169 ASN170 HIS171 ASN172 PHE173 ALA174 LYS175 ALA175A ARG175B GLU175C LYS175D VAL175E PRO175F LYS175G LEU175H HIS175I SER175J ILE176 ARG177 ASP178 ARG179 ASN180 GLY181 THR182 HIS183 LEU184 ASP185 ALA186 GLY187 ALA188 LEU189 THR190 THR191 THR192 PHE193 GLU194 GLU195 LEU196 HIS197 PHE198 GLU199 ILE200 LYS201 PRO202 HIS203 HIS204 ASP205 CYS206 THR207 VAL208 GLU209 GLN210 ILE211 TYR212 GLU213 ILE214 LEU215 LYS216 ILE217 TYR218 GLN219 LEU220 MET221 ASP222 HIS224 SER225 ASN226 MET227 ASP228 CYS229 PHE230 ILE231 CYS232 CYS233 ILE234 LEU235 SER236 HIS237 GLY238 ASP239 LYS240 GLY241 ILE242 ILE243 TYR244 GLY245 THR246 ASP247 GLY248 GLN254 GLU255 ALA256 PRO257 ILE258 TYR259 GLU260 LEU261 THR262 SER263 GLN264 PHE265 THR266 GLY267 LEU268 LYS269 CYS270 PRO271 SER272 LEU273 ALA274 GLY275 LYS276 PRO277 LYS278 VAL279 PHE280 PHE281 ILE282 GLN283 ALA284 CYS285 GLN286 GLY287 ASP288 ASN289 TYR290 GLN291 LYS292 GLY293 ILE294 PRO295 VAL296 GLU297 THR298 ASP299
Unit 5 THR318 ARG319 TYR320 ILE321 PRO322 ASP323 GLU324 ALA325 ASP326 PHE327 LEU328 LEU329 GLY330 MET331 ALA332 THR333 VAL334 ASN335 ASN336 CYS337 VAL338 SER339 TYR340 ARG341 ASN342 PRO343 ALA344 GLU345 GLY346 THR347 TRP348 TYR349 ILE350 GLN351 SER352 LEU353 CYS354 GLN355 SER356 LEU357 ARG358 GLU359 ARG360 CYS361 PRO362 ARG362B GLY363 ASP364 ASP365 ILE366 LEU367 THR368 ILE369 LEU370 THR371 GLU372 VAL373 ASN374 TYR375 GLU376 VAL377 SER378 ASN379 LYS381 ASP381A ASP381B LYS381C LYS381D ASN381E MET382 GLY383 LYS384 GLN385 MET386 PRO387 GLN388 PRO389 THR390 PHE392 THR393 LEU394 ARG395 LYS396 LYS397 LEU398 VAL399 PHE400 PRO401 SER402
Unit 6 PHQ4200 ASP4201 GLU4202 VAL4203 ASA4204
Unit 7 LEU149 ASP150 LYS151 VAL152 TYR153 GLN154 MET155 LYS156 SER157 LYS160 PRO161 ARG162 GLY163 TYR164 CYS165 LEU166 ILE167 ILE168 ASN169 ASN170 HIS171 ASN172 PHE173 ALA174 LYS175 ALA175A ARG175B GLU175C LYS175D VAL175E PRO175F LYS175G LEU175H HIS175I SER175J ILE176 ARG177 ASP178 ARG179 ASN180 GLY181 THR182 HIS183 LEU184 ASP185 ALA186 GLY187 ALA188 LEU189 THR190 THR191 THR192 PHE193 GLU194 GLU195 LEU196 HIS197 PHE198 GLU199 ILE200 LYS201 PRO202 HIS203 HIS204 ASP205 CYS206 THR207 VAL208 GLU209 GLN210 ILE211 TYR212 GLU213 ILE214 LEU215 LYS216 ILE217 TYR218 GLN219 LEU220 MET221 ASP222 HIS224 SER225 ASN226 MET227 ASP228 CYS229 PHE230 ILE231 CYS232 CYS233 ILE234 LEU235 SER236 HIS237 GLY238 ASP239 LYS240 GLY241 ILE242 ILE243 TYR244 GLY245 THR246 ASP247 GLY248 GLN254 GLU255 ALA256 PRO257 ILE258 TYR259 GLU260 LEU261 THR262 SER263 GLN264 PHE265 THR266 GLY267 LEU268 LYS269 CYS270 PRO271 SER272 LEU273 ALA274 GLY275 LYS276 PRO277 LYS278 VAL279 PHE280 PHE281 ILE282 GLN283 ALA284 CYS285 GLN286 GLY287 ASP288 ASN289 TYR290 GLN291 LYS292 GLY293 ILE294 PRO295 VAL296 GLU297 THR298 ASP299
Unit 8 THR318 ARG319 TYR320 ILE321 PRO322 ASP323 GLU324 ALA325 ASP326 PHE327 LEU328 LEU329 GLY330 MET331 ALA332 THR333 VAL334 ASN335 ASN336 CYS337 VAL338 SER339 TYR340 ARG341 ASN342 PRO343 ALA344 GLU345 GLY346 THR347 TRP348 TYR349 ILE350 GLN351 SER352 LEU353 CYS354 GLN355 SER356 LEU357 ARG358 GLU359 ARG360 CYS361 PRO362 ARG362B GLY363 ASP364 ASP365 ILE366 LEU367 THR368 ILE369 LEU370 THR371 GLU372 VAL373 ASN374 TYR375 GLU376 VAL377 SER378 ASN379 LYS381 ASP381A ASP381B LYS381C LYS381D ASN381E MET382 GLY383 LYS384 GLN385 MET386 PRO387 GLN388 PRO389 THR390 PHE392 THR393 LEU394 ARG395 LYS396 LYS397 LEU398 VAL399 PHE400 PRO401 SER402
Unit 9 PHQ4300 ASP4301 GLU4302 VAL4303 ASA4304
Unit 10 LEU149 ASP150 LYS151 VAL152 TYR153 GLN154 MET155 LYS156 SER157 LYS160 PRO161 ARG162 GLY163 TYR164 CYS165 LEU166 ILE167 ILE168 ASN169 ASN170 HIS171 ASN172 PHE173 ALA174 LYS175 ALA175A ARG175B GLU175C LYS175D VAL175E PRO175F LYS175G LEU175H HIS175I SER175J ILE176 ARG177 ASP178 ARG179 ASN180 GLY181 THR182 HIS183 LEU184 ASP185 ALA186 GLY187 ALA188 LEU189 THR190 THR191 THR192 PHE193 GLU194 GLU195 LEU196 HIS197 PHE198 GLU199 ILE200 LYS201 PRO202 HIS203 HIS204 ASP205 CYS206 THR207 VAL208 GLU209 GLN210 ILE211 TYR212 GLU213 ILE214 LEU215 LYS216 ILE217 TYR218 GLN219 LEU220 MET221 ASP222 HIS224 SER225 ASN226 MET227 ASP228 CYS229 PHE230 ILE231 CYS232 CYS233 ILE234 LEU235 SER236 HIS237 GLY238 ASP239 LYS240 GLY241 ILE242 ILE243 TYR244 GLY245 THR246 ASP247 GLY248 GLN254 GLU255 ALA256 PRO257 ILE258 TYR259 GLU260 LEU261 THR262 SER263 GLN264 PHE265 THR266 GLY267 LEU268 LYS269 CYS270 PRO271 SER272 LEU273 ALA274 GLY275 LYS276 PRO277 LYS278 VAL279 PHE280 PHE281 ILE282 GLN283 ALA284 CYS285 GLN286 GLY287 ASP288 ASN289 TYR290 GLN291 LYS292 GLY293 ILE294 PRO295 VAL296 GLU297 THR298 ASP299
Unit 11 THR318 ARG319 TYR320 ILE321 PRO322 ASP323 GLU324 ALA325 ASP326 PHE327 LEU328 LEU329 GLY330 MET331 ALA332 THR333 VAL334 ASN335 ASN336 CYS337 VAL338 SER339 TYR340 ARG341 ASN342 PRO343 ALA344 GLU345 GLY346 THR347 TRP348 TYR349 ILE350 GLN351 SER352 LEU353 CYS354 GLN355 SER356 LEU357 ARG358 GLU359 ARG360 CYS361 PRO362 ARG362B GLY363 ASP364 ASP365 ILE366 LEU367 THR368 ILE369 LEU370 THR371 GLU372 VAL373 ASN374 TYR375 GLU376 VAL377 SER378 ASN379 LYS381 ASP381A ASP381B LYS381C LYS381D ASN381E MET382 GLY383 LYS384 GLN385 MET386 PRO387 GLN388 PRO389 THR390 PHE392 THR393 LEU394 ARG395 LYS396 LYS397 LEU398 VAL399 PHE400 PRO401 SER402
Unit 12 PHQ4400 ASP4401 GLU4402 VAL4403 ASA4404
Unit 13 LEU149 ASP150 LYS151 VAL152 TYR153 GLN154 MET155 LYS156 SER157 LYS160 PRO161 ARG162 GLY163 TYR164 CYS165 LEU166 ILE167 ILE168 ASN169 ASN170 HIS171 ASN172 PHE173 ALA174 LYS175 ALA175A ARG175B GLU175C LYS175D VAL175E PRO175F LYS175G LEU175H HIS175I SER175J ILE176 ARG177 ASP178 ARG179 ASN180 GLY181 THR182 HIS183 LEU184 ASP185 ALA186 GLY187 ALA188 LEU189 THR190 THR191 THR192 PHE193 GLU194 GLU195 LEU196 HIS197 PHE198 GLU199 ILE200 LYS201 PRO202 HIS203 HIS204 ASP205 CYS206 THR207 VAL208 GLU209 GLN210 ILE211 TYR212 GLU213 ILE214 LEU215 LYS216 ILE217 TYR218 GLN219 LEU220 MET221 ASP222 HIS224 SER225 ASN226 MET227 ASP228 CYS229 PHE230 ILE231 CYS232 CYS233 ILE234 LEU235 SER236 HIS237 GLY238 ASP239 LYS240 GLY241 ILE242 ILE243 TYR244 GLY245 THR246 ASP247 GLY248 GLN254 GLU255 ALA256 PRO257 ILE258 TYR259 GLU260 LEU261 THR262 SER263 GLN264 PHE265 THR266 GLY267 LEU268 LYS269 CYS270 PRO271 SER272 LEU273 ALA274 GLY275 LYS276 PRO277 LYS278 VAL279 PHE280 PHE281 ILE282 GLN283 ALA284 CYS285 GLN286 GLY287 ASP288 ASN289 TYR290 GLN291 LYS292 GLY293 ILE294 PRO295 VAL296 GLU297 THR298 ASP299
Unit 14 THR318 ARG319 TYR320 ILE321 PRO322 ASP323 GLU324 ALA325 ASP326 PHE327 LEU328 LEU329 GLY330 MET331 ALA332 THR333 VAL334 ASN335 ASN336 CYS337 VAL338 SER339 TYR340 ARG341 ASN342 PRO343 ALA344 GLU345 GLY346 THR347 TRP348 TYR349 ILE350 GLN351 SER352 LEU353 CYS354 GLN355 SER356 LEU357 ARG358 GLU359 ARG360 CYS361 PRO362 ARG362B GLY363 ASP364 ASP365 ILE366 LEU367 THR368 ILE369 LEU370 THR371 GLU372 VAL373 ASN374 TYR375 GLU376 VAL377 SER378 ASN379 LYS381 ASP381A ASP381B LYS381C LYS381D ASN381E MET382 GLY383 LYS384 GLN385 MET386 PRO387 GLN388 PRO389 THR390 PHE392 THR393 LEU394 ARG395 LYS396 LYS397 LEU398 VAL399 PHE400 PRO401 SER402
Unit 15 PHQ4500 ASP4501 GLU4502 VAL4503 ASA4504
Unit 16 LEU149 ASP150 LYS151 VAL152 TYR153 GLN154 MET155 LYS156 SER157 LYS160 PRO161 ARG162 GLY163 TYR164 CYS165 LEU166 ILE167 ILE168 ASN169 ASN170 HIS171 ASN172 PHE173 ALA174 LYS175 ALA175A ARG175B GLU175C LYS175D VAL175E PRO175F LYS175G LEU175H HIS175I SER175J ILE176 ARG177 ASP178 ARG179 ASN180 GLY181 THR182 HIS183 LEU184 ASP185 ALA186 GLY187 ALA188 LEU189 THR190 THR191 THR192 PHE193 GLU194 GLU195 LEU196 HIS197 PHE198 GLU199 ILE200 LYS201 PRO202 HIS203 HIS204 ASP205 CYS206 THR207 VAL208 GLU209 GLN210 ILE211 TYR212 GLU213 ILE214 LEU215 LYS216 ILE217 TYR218 GLN219 LEU220 MET221 ASP222 HIS224 SER225 ASN226 MET227 ASP228 CYS229 PHE230 ILE231 CYS232 CYS233 ILE234 LEU235 SER236 HIS237 GLY238 ASP239 LYS240 GLY241 ILE242 ILE243 TYR244 GLY245 THR246 ASP247 GLY248 GLN254 GLU255 ALA256 PRO257 ILE258 TYR259 GLU260 LEU261 THR262 SER263 GLN264 PHE265 THR266 GLY267 LEU268 LYS269 CYS270 PRO271 SER272 LEU273 ALA274 GLY275 LYS276 PRO277 LYS278 VAL279 PHE280 PHE281 ILE282 GLN283 ALA284 CYS285 GLN286 GLY287 ASP288 ASN289 TYR290 GLN291 LYS292 GLY293 ILE294 PRO295 VAL296 GLU297 THR298 ASP299
Unit 17 THR318 ARG319 TYR320 ILE321 PRO322 ASP323 GLU324 ALA325 ASP326 PHE327 LEU328 LEU329 GLY330 MET331 ALA332 THR333 VAL334 ASN335 ASN336 CYS337 VAL338 SER339 TYR340 ARG341 ASN342 PRO343 ALA344 GLU345 GLY346 THR347 TRP348 TYR349 ILE350 GLN351 SER352 LEU353 CYS354 GLN355 SER356 LEU357 ARG358 GLU359 ARG360 CYS361 PRO362 ARG362B GLY363 ASP364 ASP365 ILE366 LEU367 THR368 ILE369 LEU370 THR371 GLU372 VAL373 ASN374 TYR375 GLU376 VAL377 SER378 ASN379 LYS381 ASP381A ASP381B LYS381C LYS381D ASN381E MET382 GLY383 LYS384 GLN385 MET386 PRO387 GLN388 PRO389 THR390 PHE392 THR393 LEU394 ARG395 LYS396 LYS397 LEU398 VAL399 PHE400 PRO401 SER402
Unit 18 PHQ4600 ASP4601 GLU4602 VAL4603 ASA4604
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany