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Title | CRYSTAL STRUCTURE OF 3-BROMOPYRUVATE MODIFIED ISOCITRATE LYASE (ICL) FROM MYCOBACTERIUM TUBERCULOSIS | |
Keywords | ALPHA-BETA BARREL, HELIX-SWAPPING, CLOSED CONFORMATION, BROMOPYUVATE MODIFICATION, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, LYASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1F8M | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | ISOCITRATE LYASE | A | 427 | 3308 | 0 |
2 | Protein | ISOCITRATE LYASE | B | 427 | 3308 | 0 |
3 | Protein | ISOCITRATE LYASE | C | 427 | 3308 | 0 |
4 | Protein | ISOCITRATE LYASE | D | 427 | 3308 | 0 |
5 | Ligand | ISOCITRATE LYASE | A | 2 | 0 | 7 |
6 | Ligand | ISOCITRATE LYASE | B | 2 | 0 | 7 |
7 | Ligand | ISOCITRATE LYASE | C | 2 | 0 | 7 |
8 | Ligand | ISOCITRATE LYASE | D | 2 | 0 | 7 |
9 | Water | 1016 | 0 | 1016 | ||
total | 2732 | 13232 | 1044 |
Unit 1 | ALA1 SER2 VAL3 VAL4 GLY5 THR6 PRO7 LYS8 SER9 ALA10 GLU11 GLN12 ILE13 GLN14 GLN15 GLU16 TRP17 ASP18 THR19 ASN20 PRO21 ARG22 TRP23 LYS24 ASP25 VAL26 THR27 ARG28 THR29 TYR30 SER31 ALA32 GLU33 ASP34 VAL35 VAL36 ALA37 LEU38 GLN39 GLY40 SER41 VAL42 VAL43 GLU44 GLU45 HIS46 THR47 LEU48 ALA49 ARG50 ARG51 GLY52 ALA53 GLU54 VAL55 LEU56 TRP57 GLU58 GLN59 LEU60 HIS61 ASP62 LEU63 GLU64 TRP65 VAL66 ASN67 ALA68 LEU69 GLY70 ALA71 LEU72 THR73 GLY74 ASN75 MET76 ALA77 VAL78 GLN79 GLN80 VAL81 ARG82 ALA83 GLY84 LEU85 LYS86 ALA87 ILE88 TYR89 LEU90 SER91 GLY92 TRP93 GLN94 VAL95 ALA96 GLY97 ASP98 ALA99 ASN100 LEU101 SER102 GLY103 HIS104 THR105 TYR106 PRO107 ASP108 GLN109 SER110 LEU111 TYR112 PRO113 ALA114 ASN115 SER116 VAL117 PRO118 GLN119 VAL120 VAL121 ARG122 ARG123 ILE124 ASN125 ASN126 ALA127 LEU128 GLN129 ARG130 ALA131 ASP132 GLN133 ILE134 ALA135 LYS136 ILE137 GLU138 GLY139 ASP140 THR141 SER142 VAL143 GLU144 ASN145 TRP146 LEU147 ALA148 PRO149 ILE150 VAL151 ALA152 ASP153 GLY154 GLU155 ALA156 GLY157 PHE158 GLY159 GLY160 ALA161 LEU162 ASN163 VAL164 TYR165 GLU166 LEU167 GLN168 LYS169 ALA170 LEU171 ILE172 ALA173 ALA174 GLY175 VAL176 ALA177 GLY178 SER179 HIS180 TRP181 GLU182 ASP183 GLN184 LEU185 ALA186 SER187 GLU188 LYS189 LYS190 CYS191 GLY192 HIS193 LEU194 GLY195 GLY196 LYS197 VAL198 LEU199 ILE200 PRO201 THR202 GLN203 GLN204 HIS205 ILE206 ARG207 THR208 LEU209 THR210 SER211 ALA212 ARG213 LEU214 ALA215 ALA216 ASP217 VAL218 ALA219 ASP220 VAL221 PRO222 THR223 VAL224 VAL225 ILE226 ALA227 ARG228 THR229 ASP230 ALA231 GLU232 ALA233 ALA234 THR235 LEU236 ILE237 THR238 SER239 ASP240 VAL241 ASP242 GLU243 ARG244 ASP245 GLN246 PRO247 PHE248 ILE249 THR250 GLY251 GLU252 ARG253 THR254 ARG255 GLU256 GLY257 PHE258 TYR259 ARG260 THR261 LYS262 ASN263 GLY264 ILE265 GLU266 PRO267 CYS268 ILE269 ALA270 ARG271 ALA272 LYS273 ALA274 TYR275 ALA276 PRO277 PHE278 ALA279 ASP280 LEU281 ILE282 TRP283 MET284 GLU285 THR286 GLY287 THR288 PRO289 ASP290 LEU291 GLU292 ALA293 ALA294 ARG295 GLN296 PHE297 SER298 GLU299 ALA300 VAL301 LYS302 ALA303 GLU304 TYR305 PRO306 ASP307 GLN308 MET309 LEU310 ALA311 TYR312 ASN313 CYS314 SER315 PRO316 SER317 PHE318 ASN319 TRP320 LYS321 LYS322 HIS323 LEU324 ASP325 ASP326 ALA327 THR328 ILE329 ALA330 LYS331 PHE332 GLN333 LYS334 GLU335 LEU336 ALA337 ALA338 MET339 GLY340 PHE341 LYS342 PHE343 GLN344 PHE345 ILE346 THR347 LEU348 ALA349 GLY350 PHE351 HIS352 ALA353 LEU354 ASN355 TYR356 SER357 MET358 PHE359 ASP360 LEU361 ALA362 TYR363 GLY364 TYR365 ALA366 GLN367 ASN368 GLN369 MET370 SER371 ALA372 TYR373 VAL374 GLU375 LEU376 GLN377 GLU378 ARG379 GLU380 PHE381 ALA382 ALA383 GLU384 GLU385 ARG386 GLY387 TYR388 THR389 ALA390 THR391 LYS392 HIS393 GLN394 ARG395 GLU396 VAL397 GLY398 ALA399 GLY400 TYR401 PHE402 ASP403 ARG404 ILE405 ALA406 THR407 THR408 VAL409 ASP410 PRO411 ASN412 SER413 SER414 THR415 THR416 ALA417 LEU418 THR419 GLY420 SER421 THR422 GLU423 GLU424 GLY425 GLN426 PHE427 |
Unit 2 | ALA1 SER2 VAL3 VAL4 GLY5 THR6 PRO7 LYS8 SER9 ALA10 GLU11 GLN12 ILE13 GLN14 GLN15 GLU16 TRP17 ASP18 THR19 ASN20 PRO21 ARG22 TRP23 LYS24 ASP25 VAL26 THR27 ARG28 THR29 TYR30 SER31 ALA32 GLU33 ASP34 VAL35 VAL36 ALA37 LEU38 GLN39 GLY40 SER41 VAL42 VAL43 GLU44 GLU45 HIS46 THR47 LEU48 ALA49 ARG50 ARG51 GLY52 ALA53 GLU54 VAL55 LEU56 TRP57 GLU58 GLN59 LEU60 HIS61 ASP62 LEU63 GLU64 TRP65 VAL66 ASN67 ALA68 LEU69 GLY70 ALA71 LEU72 THR73 GLY74 ASN75 MET76 ALA77 VAL78 GLN79 GLN80 VAL81 ARG82 ALA83 GLY84 LEU85 LYS86 ALA87 ILE88 TYR89 LEU90 SER91 GLY92 TRP93 GLN94 VAL95 ALA96 GLY97 ASP98 ALA99 ASN100 LEU101 SER102 GLY103 HIS104 THR105 TYR106 PRO107 ASP108 GLN109 SER110 LEU111 TYR112 PRO113 ALA114 ASN115 SER116 VAL117 PRO118 GLN119 VAL120 VAL121 ARG122 ARG123 ILE124 ASN125 ASN126 ALA127 LEU128 GLN129 ARG130 ALA131 ASP132 GLN133 ILE134 ALA135 LYS136 ILE137 GLU138 GLY139 ASP140 THR141 SER142 VAL143 GLU144 ASN145 TRP146 LEU147 ALA148 PRO149 ILE150 VAL151 ALA152 ASP153 GLY154 GLU155 ALA156 GLY157 PHE158 GLY159 GLY160 ALA161 LEU162 ASN163 VAL164 TYR165 GLU166 LEU167 GLN168 LYS169 ALA170 LEU171 ILE172 ALA173 ALA174 GLY175 VAL176 ALA177 GLY178 SER179 HIS180 TRP181 GLU182 ASP183 GLN184 LEU185 ALA186 SER187 GLU188 LYS189 LYS190 CYS191 GLY192 HIS193 LEU194 GLY195 GLY196 LYS197 VAL198 LEU199 ILE200 PRO201 THR202 GLN203 GLN204 HIS205 ILE206 ARG207 THR208 LEU209 THR210 SER211 ALA212 ARG213 LEU214 ALA215 ALA216 ASP217 VAL218 ALA219 ASP220 VAL221 PRO222 THR223 VAL224 VAL225 ILE226 ALA227 ARG228 THR229 ASP230 ALA231 GLU232 ALA233 ALA234 THR235 LEU236 ILE237 THR238 SER239 ASP240 VAL241 ASP242 GLU243 ARG244 ASP245 GLN246 PRO247 PHE248 ILE249 THR250 GLY251 GLU252 ARG253 THR254 ARG255 GLU256 GLY257 PHE258 TYR259 ARG260 THR261 LYS262 ASN263 GLY264 ILE265 GLU266 PRO267 CYS268 ILE269 ALA270 ARG271 ALA272 LYS273 ALA274 TYR275 ALA276 PRO277 PHE278 ALA279 ASP280 LEU281 ILE282 TRP283 MET284 GLU285 THR286 GLY287 THR288 PRO289 ASP290 LEU291 GLU292 ALA293 ALA294 ARG295 GLN296 PHE297 SER298 GLU299 ALA300 VAL301 LYS302 ALA303 GLU304 TYR305 PRO306 ASP307 GLN308 MET309 LEU310 ALA311 TYR312 ASN313 CYS314 SER315 PRO316 SER317 PHE318 ASN319 TRP320 LYS321 LYS322 HIS323 LEU324 ASP325 ASP326 ALA327 THR328 ILE329 ALA330 LYS331 PHE332 GLN333 LYS334 GLU335 LEU336 ALA337 ALA338 MET339 GLY340 PHE341 LYS342 PHE343 GLN344 PHE345 ILE346 THR347 LEU348 ALA349 GLY350 PHE351 HIS352 ALA353 LEU354 ASN355 TYR356 SER357 MET358 PHE359 ASP360 LEU361 ALA362 TYR363 GLY364 TYR365 ALA366 GLN367 ASN368 GLN369 MET370 SER371 ALA372 TYR373 VAL374 GLU375 LEU376 GLN377 GLU378 ARG379 GLU380 PHE381 ALA382 ALA383 GLU384 GLU385 ARG386 GLY387 TYR388 THR389 ALA390 THR391 LYS392 HIS393 GLN394 ARG395 GLU396 VAL397 GLY398 ALA399 GLY400 TYR401 PHE402 ASP403 ARG404 ILE405 ALA406 THR407 THR408 VAL409 ASP410 PRO411 ASN412 SER413 SER414 THR415 THR416 ALA417 LEU418 THR419 GLY420 SER421 THR422 GLU423 GLU424 GLY425 GLN426 PHE427 |
Unit 3 | ALA1 SER2 VAL3 VAL4 GLY5 THR6 PRO7 LYS8 SER9 ALA10 GLU11 GLN12 ILE13 GLN14 GLN15 GLU16 TRP17 ASP18 THR19 ASN20 PRO21 ARG22 TRP23 LYS24 ASP25 VAL26 THR27 ARG28 THR29 TYR30 SER31 ALA32 GLU33 ASP34 VAL35 VAL36 ALA37 LEU38 GLN39 GLY40 SER41 VAL42 VAL43 GLU44 GLU45 HIS46 THR47 LEU48 ALA49 ARG50 ARG51 GLY52 ALA53 GLU54 VAL55 LEU56 TRP57 GLU58 GLN59 LEU60 HIS61 ASP62 LEU63 GLU64 TRP65 VAL66 ASN67 ALA68 LEU69 GLY70 ALA71 LEU72 THR73 GLY74 ASN75 MET76 ALA77 VAL78 GLN79 GLN80 VAL81 ARG82 ALA83 GLY84 LEU85 LYS86 ALA87 ILE88 TYR89 LEU90 SER91 GLY92 TRP93 GLN94 VAL95 ALA96 GLY97 ASP98 ALA99 ASN100 LEU101 SER102 GLY103 HIS104 THR105 TYR106 PRO107 ASP108 GLN109 SER110 LEU111 TYR112 PRO113 ALA114 ASN115 SER116 VAL117 PRO118 GLN119 VAL120 VAL121 ARG122 ARG123 ILE124 ASN125 ASN126 ALA127 LEU128 GLN129 ARG130 ALA131 ASP132 GLN133 ILE134 ALA135 LYS136 ILE137 GLU138 GLY139 ASP140 THR141 SER142 VAL143 GLU144 ASN145 TRP146 LEU147 ALA148 PRO149 ILE150 VAL151 ALA152 ASP153 GLY154 GLU155 ALA156 GLY157 PHE158 GLY159 GLY160 ALA161 LEU162 ASN163 VAL164 TYR165 GLU166 LEU167 GLN168 LYS169 ALA170 LEU171 ILE172 ALA173 ALA174 GLY175 VAL176 ALA177 GLY178 SER179 HIS180 TRP181 GLU182 ASP183 GLN184 LEU185 ALA186 SER187 GLU188 LYS189 LYS190 CYS191 GLY192 HIS193 LEU194 GLY195 GLY196 LYS197 VAL198 LEU199 ILE200 PRO201 THR202 GLN203 GLN204 HIS205 ILE206 ARG207 THR208 LEU209 THR210 SER211 ALA212 ARG213 LEU214 ALA215 ALA216 ASP217 VAL218 ALA219 ASP220 VAL221 PRO222 THR223 VAL224 VAL225 ILE226 ALA227 ARG228 THR229 ASP230 ALA231 GLU232 ALA233 ALA234 THR235 LEU236 ILE237 THR238 SER239 ASP240 VAL241 ASP242 GLU243 ARG244 ASP245 GLN246 PRO247 PHE248 ILE249 THR250 GLY251 GLU252 ARG253 THR254 ARG255 GLU256 GLY257 PHE258 TYR259 ARG260 THR261 LYS262 ASN263 GLY264 ILE265 GLU266 PRO267 CYS268 ILE269 ALA270 ARG271 ALA272 LYS273 ALA274 TYR275 ALA276 PRO277 PHE278 ALA279 ASP280 LEU281 ILE282 TRP283 MET284 GLU285 THR286 GLY287 THR288 PRO289 ASP290 LEU291 GLU292 ALA293 ALA294 ARG295 GLN296 PHE297 SER298 GLU299 ALA300 VAL301 LYS302 ALA303 GLU304 TYR305 PRO306 ASP307 GLN308 MET309 LEU310 ALA311 TYR312 ASN313 CYS314 SER315 PRO316 SER317 PHE318 ASN319 TRP320 LYS321 LYS322 HIS323 LEU324 ASP325 ASP326 ALA327 THR328 ILE329 ALA330 LYS331 PHE332 GLN333 LYS334 GLU335 LEU336 ALA337 ALA338 MET339 GLY340 PHE341 LYS342 PHE343 GLN344 PHE345 ILE346 THR347 LEU348 ALA349 GLY350 PHE351 HIS352 ALA353 LEU354 ASN355 TYR356 SER357 MET358 PHE359 ASP360 LEU361 ALA362 TYR363 GLY364 TYR365 ALA366 GLN367 ASN368 GLN369 MET370 SER371 ALA372 TYR373 VAL374 GLU375 LEU376 GLN377 GLU378 ARG379 GLU380 PHE381 ALA382 ALA383 GLU384 GLU385 ARG386 GLY387 TYR388 THR389 ALA390 THR391 LYS392 HIS393 GLN394 ARG395 GLU396 VAL397 GLY398 ALA399 GLY400 TYR401 PHE402 ASP403 ARG404 ILE405 ALA406 THR407 THR408 VAL409 ASP410 PRO411 ASN412 SER413 SER414 THR415 THR416 ALA417 LEU418 THR419 GLY420 SER421 THR422 GLU423 GLU424 GLY425 GLN426 PHE427 |
Unit 4 | ALA1 SER2 VAL3 VAL4 GLY5 THR6 PRO7 LYS8 SER9 ALA10 GLU11 GLN12 ILE13 GLN14 GLN15 GLU16 TRP17 ASP18 THR19 ASN20 PRO21 ARG22 TRP23 LYS24 ASP25 VAL26 THR27 ARG28 THR29 TYR30 SER31 ALA32 GLU33 ASP34 VAL35 VAL36 ALA37 LEU38 GLN39 GLY40 SER41 VAL42 VAL43 GLU44 GLU45 HIS46 THR47 LEU48 ALA49 ARG50 ARG51 GLY52 ALA53 GLU54 VAL55 LEU56 TRP57 GLU58 GLN59 LEU60 HIS61 ASP62 LEU63 GLU64 TRP65 VAL66 ASN67 ALA68 LEU69 GLY70 ALA71 LEU72 THR73 GLY74 ASN75 MET76 ALA77 VAL78 GLN79 GLN80 VAL81 ARG82 ALA83 GLY84 LEU85 LYS86 ALA87 ILE88 TYR89 LEU90 SER91 GLY92 TRP93 GLN94 VAL95 ALA96 GLY97 ASP98 ALA99 ASN100 LEU101 SER102 GLY103 HIS104 THR105 TYR106 PRO107 ASP108 GLN109 SER110 LEU111 TYR112 PRO113 ALA114 ASN115 SER116 VAL117 PRO118 GLN119 VAL120 VAL121 ARG122 ARG123 ILE124 ASN125 ASN126 ALA127 LEU128 GLN129 ARG130 ALA131 ASP132 GLN133 ILE134 ALA135 LYS136 ILE137 GLU138 GLY139 ASP140 THR141 SER142 VAL143 GLU144 ASN145 TRP146 LEU147 ALA148 PRO149 ILE150 VAL151 ALA152 ASP153 GLY154 GLU155 ALA156 GLY157 PHE158 GLY159 GLY160 ALA161 LEU162 ASN163 VAL164 TYR165 GLU166 LEU167 GLN168 LYS169 ALA170 LEU171 ILE172 ALA173 ALA174 GLY175 VAL176 ALA177 GLY178 SER179 HIS180 TRP181 GLU182 ASP183 GLN184 LEU185 ALA186 SER187 GLU188 LYS189 LYS190 CYS191 GLY192 HIS193 LEU194 GLY195 GLY196 LYS197 VAL198 LEU199 ILE200 PRO201 THR202 GLN203 GLN204 HIS205 ILE206 ARG207 THR208 LEU209 THR210 SER211 ALA212 ARG213 LEU214 ALA215 ALA216 ASP217 VAL218 ALA219 ASP220 VAL221 PRO222 THR223 VAL224 VAL225 ILE226 ALA227 ARG228 THR229 ASP230 ALA231 GLU232 ALA233 ALA234 THR235 LEU236 ILE237 THR238 SER239 ASP240 VAL241 ASP242 GLU243 ARG244 ASP245 GLN246 PRO247 PHE248 ILE249 THR250 GLY251 GLU252 ARG253 THR254 ARG255 GLU256 GLY257 PHE258 TYR259 ARG260 THR261 LYS262 ASN263 GLY264 ILE265 GLU266 PRO267 CYS268 ILE269 ALA270 ARG271 ALA272 LYS273 ALA274 TYR275 ALA276 PRO277 PHE278 ALA279 ASP280 LEU281 ILE282 TRP283 MET284 GLU285 THR286 GLY287 THR288 PRO289 ASP290 LEU291 GLU292 ALA293 ALA294 ARG295 GLN296 PHE297 SER298 GLU299 ALA300 VAL301 LYS302 ALA303 GLU304 TYR305 PRO306 ASP307 GLN308 MET309 LEU310 ALA311 TYR312 ASN313 CYS314 SER315 PRO316 SER317 PHE318 ASN319 TRP320 LYS321 LYS322 HIS323 LEU324 ASP325 ASP326 ALA327 THR328 ILE329 ALA330 LYS331 PHE332 GLN333 LYS334 GLU335 LEU336 ALA337 ALA338 MET339 GLY340 PHE341 LYS342 PHE343 GLN344 PHE345 ILE346 THR347 LEU348 ALA349 GLY350 PHE351 HIS352 ALA353 LEU354 ASN355 TYR356 SER357 MET358 PHE359 ASP360 LEU361 ALA362 TYR363 GLY364 TYR365 ALA366 GLN367 ASN368 GLN369 MET370 SER371 ALA372 TYR373 VAL374 GLU375 LEU376 GLN377 GLU378 ARG379 GLU380 PHE381 ALA382 ALA383 GLU384 GLU385 ARG386 GLY387 TYR388 THR389 ALA390 THR391 LYS392 HIS393 GLN394 ARG395 GLU396 VAL397 GLY398 ALA399 GLY400 TYR401 PHE402 ASP403 ARG404 ILE405 ALA406 THR407 THR408 VAL409 ASP410 PRO411 ASN412 SER413 SER414 THR415 THR416 ALA417 LEU418 THR419 GLY420 SER421 THR422 GLU423 GLU424 GLY425 GLN426 PHE427 |
Unit 5 | MG451 PYR500 |
Unit 6 | MG452 PYR500 |
Unit 7 | MG453 PYR500 |
Unit 8 | MG454 PYR500 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |