1F88 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
• Keywords: PHOTORECEPTOR, G PROTEIN-COUPLED RECEPTOR, MEMBRANE PROTEIN, PROTEIN, VISUAL PIGMENT, SIGNALING PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1F88	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RHODOPSIN	A	338	2638	0
2	Protein	RHODOPSIN	B	305	2429	0
3	Ligand		C	2	0	28
4	Ligand		D	2	0	28
5	Ligand		E	3	0	39
6	Ligand		F	2	0	28
7	Ligand	RHODOPSIN	A	6	0	25
8	Ligand	RHODOPSIN	B	6	0	25
9	Water			27	0	27
total				691	5067	200

Proteins

Unit 1

MET 1 ASN 2 GLY 3 THR 4 GLU 5 GLY 6 PRO 7 ASN 8 PHE 9 TYR 10 VAL 11 PRO 12 PHE 13 SER 14 ASN 15 LYS 16 THR 17 GLY 18 VAL 19 VAL 20 ARG 21 SER 22 PRO 23 PHE 24 GLU 25 ALA 26 PRO 27 GLN 28 TYR 29 TYR 30 LEU 31 ALA 32 GLU 33 PRO 34 TRP 35 GLN 36 PHE 37 SER 38 MET 39 LEU 40 ALA 41 ALA 42 TYR 43 MET 44 PHE 45 LEU 46 LEU 47 ILE 48 MET 49 LEU 50 GLY 51 PHE 52 PRO 53 ILE 54 ASN 55 PHE 56 LEU 57 THR 58 LEU 59 TYR 60 VAL 61 THR 62 VAL 63 GLN 64 HIS 65 LYS 66 LYS 67 LEU 68 ARG 69 THR 70 PRO 71 LEU 72 ASN 73 TYR 74 ILE 75 LEU 76 LEU 77 ASN 78 LEU 79 ALA 80 VAL 81 ALA 82 ASP 83 LEU 84 PHE 85 MET 86 VAL 87 PHE 88 GLY 89 GLY 90 PHE 91 THR 92 THR 93 THR 94 LEU 95 TYR 96 THR 97 SER 98 LEU 99 HIS 100 GLY 101 TYR 102 PHE 103 VAL 104 PHE 105 GLY 106 PRO 107 THR 108 GLY 109 CYS 110 ASN 111 LEU 112 GLU 113 GLY 114 PHE 115 PHE 116 ALA 117 THR 118 LEU 119 GLY 120 GLY 121 GLU 122 ILE 123 ALA 124 LEU 125 TRP 126 SER 127 LEU 128 VAL 129 VAL 130 LEU 131 ALA 132 ILE 133 GLU 134 ARG 135 TYR 136 VAL 137 VAL 138 VAL 139 CYS 140 LYS 141 PRO 142 MET 143 SER 144 ASN 145 PHE 146 ARG 147 PHE 148 GLY 149 GLU 150 ASN 151 HIS 152 ALA 153 ILE 154 MET 155 GLY 156 VAL 157 ALA 158 PHE 159 THR 160 TRP 161 VAL 162 MET 163 ALA 164 LEU 165 ALA 166 CYS 167 ALA 168 ALA 169 PRO 170 PRO 171 LEU 172 VAL 173 GLY 174 TRP 175 SER 176 ARG 177 TYR 178 ILE 179 PRO 180 GLU 181 GLY 182 MET 183 GLN 184 CYS 185 SER 186 CYS 187 GLY 188 ILE 189 ASP 190 TYR 191 TYR 192 THR 193 PRO 194 HIS 195 GLU 196 GLU 197 THR 198 ASN 199 ASN 200 GLU 201 SER 202 PHE 203 VAL 204 ILE 205 TYR 206 MET 207 PHE 208 VAL 209 VAL 210 HIS 211 PHE 212 ILE 213 ILE 214 PRO 215 LEU 216 ILE 217 VAL 218 ILE 219 PHE 220 PHE 221 CYS 222 TYR 223 GLY 224 GLN 225 LEU 226 VAL 227 PHE 228 THR 229 VAL 230 LYS 231 GLU 232 ALA 233 ALA 234 ALA 235 SER 240 ALA 241 THR 242 THR 243 GLN 244 LYS 245 ALA 246 GLU 247 LYS 248 GLU 249 VAL 250 THR 251 ARG 252 MET 253 VAL 254 ILE 255 ILE 256 MET 257 VAL 258 ILE 259 ALA 260 PHE 261 LEU 262 ILE 263 CYS 264 TRP 265 LEU 266 PRO 267 TYR 268 ALA 269 GLY 270 VAL 271 ALA 272 PHE 273 TYR 274 ILE 275 PHE 276 THR 277 HIS 278 GLN 279 GLY 280 SER 281 ASP 282 PHE 283 GLY 284 PRO 285 ILE 286 PHE 287 MET 288 THR 289 ILE 290 PRO 291 ALA 292 PHE 293 PHE 294 ALA 295 LYS 296 THR 297 SER 298 ALA 299 VAL 300 TYR 301 ASN 302 PRO 303 VAL 304 ILE 305 TYR 306 ILE 307 MET 308 MET 309 ASN 310 LYS 311 GLN 312 PHE 313 ARG 314 ASN 315 CYS 316 MET 317 VAL 318 THR 319 THR 320 LEU 321 CYS 322 CYS 323 GLY 324 LYS 325 ASN 326 PRO 327 SER 334 THR 335 THR 336 VAL 337 SER 338 LYS 339 THR 340 GLU 341 THR 342 SER 343 GLN 344 VAL 345 ALA 346 PRO 347 ALA 348

Unit 2

MET 1 ASN 2 GLY 3 THR 4 GLU 5 GLY 6 PRO 7 ASN 8 PHE 9 TYR 10 VAL 11 PRO 12 PHE 13 SER 14 ASN 15 LYS 16 THR 17 GLY 18 VAL 19 VAL 20 ARG 21 SER 22 PRO 23 PHE 24 GLU 25 ALA 26 PRO 27 GLN 28 TYR 29 TYR 30 LEU 31 ALA 32 GLU 33 PRO 34 TRP 35 GLN 36 PHE 37 SER 38 MET 39 LEU 40 ALA 41 ALA 42 TYR 43 MET 44 PHE 45 LEU 46 LEU 47 ILE 48 MET 49 LEU 50 GLY 51 PHE 52 PRO 53 ILE 54 ASN 55 PHE 56 LEU 57 THR 58 LEU 59 TYR 60 VAL 61 THR 62 VAL 63 GLN 64 HIS 65 LYS 66 LYS 67 LEU 68 ARG 69 THR 70 PRO 71 LEU 72 ASN 73 TYR 74 ILE 75 LEU 76 LEU 77 ASN 78 LEU 79 ALA 80 VAL 81 ALA 82 ASP 83 LEU 84 PHE 85 MET 86 VAL 87 PHE 88 GLY 89 GLY 90 PHE 91 THR 92 THR 93 THR 94 LEU 95 TYR 96 THR 97 SER 98 LEU 99 HIS 100 GLY 101 TYR 102 PHE 103 VAL 104 PHE 105 GLY 106 PRO 107 THR 108 GLY 109 CYS 110 ASN 111 LEU 112 GLU 113 GLY 114 PHE 115 PHE 116 ALA 117 THR 118 LEU 119 GLY 120 GLY 121 GLU 122 ILE 123 ALA 124 LEU 125 TRP 126 SER 127 LEU 128 VAL 129 VAL 130 LEU 131 ALA 132 ILE 133 GLU 134 ARG 135 TYR 136 VAL 137 VAL 138 VAL 139 CYS 140 LYS 141 PRO 142 PHE 148 GLY 149 GLU 150 ASN 151 HIS 152 ALA 153 ILE 154 MET 155 GLY 156 VAL 157 ALA 158 PHE 159 THR 160 TRP 161 VAL 162 MET 163 ALA 164 LEU 165 ALA 166 CYS 167 ALA 168 ALA 169 PRO 170 PRO 171 LEU 172 VAL 173 GLY 174 TRP 175 SER 176 ARG 177 TYR 178 ILE 179 PRO 180 GLU 181 GLY 182 MET 183 GLN 184 CYS 185 SER 186 CYS 187 GLY 188 ILE 189 ASP 190 TYR 191 TYR 192 THR 193 PRO 194 HIS 195 GLU 196 GLU 197 THR 198 ASN 199 ASN 200 GLU 201 SER 202 PHE 203 VAL 204 ILE 205 TYR 206 MET 207 PHE 208 VAL 209 VAL 210 HIS 211 PHE 212 ILE 213 ILE 214 PRO 215 LEU 216 ILE 217 VAL 218 ILE 219 PHE 220 PHE 221 CYS 222 TYR 223 GLY 224 GLN 225 LEU 226 THR 243 GLN 244 LYS 245 ALA 246 GLU 247 LYS 248 GLU 249 VAL 250 THR 251 ARG 252 MET 253 VAL 254 ILE 255 ILE 256 MET 257 VAL 258 ILE 259 ALA 260 PHE 261 LEU 262 ILE 263 CYS 264 TRP 265 LEU 266 PRO 267 TYR 268 ALA 269 GLY 270 VAL 271 ALA 272 PHE 273 TYR 274 ILE 275 PHE 276 THR 277 HIS 278 GLN 279 GLY 280 SER 281 ASP 282 PHE 283 GLY 284 PRO 285 ILE 286 PHE 287 MET 288 THR 289 ILE 290 PRO 291 ALA 292 PHE 293 PHE 294 ALA 295 LYS 296 THR 297 SER 298 ALA 299 VAL 300 TYR 301 ASN 302 PRO 303 VAL 304 ILE 305 TYR 306 ILE 307 MET 308 MET 309 ASN 310 LYS 311 GLN 312 PHE 313 ARG 314 ASN 315 CYS 316 MET 317 VAL 318 THR 319 THR 320 LEU 321 CYS 322 CYS 323 GLY 324 LYS 325 ASN 326

Ligands

Unit 3	NAG 1 NAG 2
Unit 4	NAG 1 NAG 2
Unit 5	NAG 1 NAG 2 MAN 3
Unit 6	NAG 1 NAG 2
Unit 7	HG 901 HG 903 HG 905 ZN 907 ZN 910 RET 977
Unit 8	HG 902 HG 904 HG 906 ZN 908 ZN 909 RET 978