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Sequence, Chains, Asymmetric and Biological Units

Title NMR STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO STEM-LOOP SL2 OF THE PSI-RNA PACKAGING SIGNAL. IMPLICATIONS FOR GENOME RECOGNITION
Keywords HIV-1, RNA, PROTEIN-RNA COMPLEX, NMR, PACKAGING SIGNAL, STRUCTURAL PROTEIN/RNA COMPLEX
Experiment NMR
Number of Models  20


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1F6U     released     available     available     Quaternary Structure Server  
NDB   1F6U                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HIV-1 NUCLEOCAPSID PROTEIN  A 56 876 1
2  RNA    B 19 582 36
3  Ligand   HIV-1 NUCLEOCAPSID PROTEIN  A 2 0 2
total       77 1458 39

Proteins
Unit 1 MET1 GLN2 LYS3 GLY4 ASN5 PHE6 ARG7 ASN8 GLN9 ARG10 LYS11 THR12 VAL13 LYS14 CYS15 PHE16 ASN17 CYS18 GLY19 LYS20 GLU21 GLY22 HIS23 ILE24 ALA25 LYS26 ASN27 CYS28 ARG29 ALA30 PRO31 ARG32 LYS33 LYS34 GLY35 CYS36 TRP37 LYS38 CYS39 GLY40 LYS41 GLU42 GLY43 HIS44 GLN45 MET46 LYS47 ASP48 CYS49 THR50 GLU51 ARG52 GLN53 ALA54 ASN55 NH256

Nucleic acids
Unit 2 CG1201 G202 C203 G204 A205 C206 U207 G208 G209 U210 G211 A212 G213 U214 A215 C216 G217 C218 C219

Ligands
Unit 3 ZN128 ZN149

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany