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Title | RICE YELLOW MOTTLE VIRUS | |
Keywords | PLANT VIRUS, CAPSID PROTEIN, COAT PROTEIN, BETA-ANNULUS, DOMAIN SWAPPING, X-RAY DIFFRACTION, ICOSAHEDRAL VIRUS | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 1F2N | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | CAPSID PROTEIN | A | 189 | 1455 | 0 |
2 | Protein | CAPSID PROTEIN | B | 189 | 1455 | 0 |
3 | Protein | CAPSID PROTEIN | C | 212 | 1618 | 0 |
4 | Ligand | CAPSID PROTEIN | A | 1 | 0 | 1 |
5 | Ligand | CAPSID PROTEIN | B | 1 | 0 | 1 |
6 | Ligand | CAPSID PROTEIN | C | 1 | 0 | 1 |
7 | Water | 199 | 0 | 199 | ||
total | 792 | 4528 | 202 |
Unit 1 | LEU50 SER51 SER52 ASN53 THR54 TRP55 PRO56 LEU57 HIS58 SER59 VAL60 GLU61 PHE62 LEU63 ALA64 ASP65 PHE66 LYS67 ARG68 SER69 SER70 THR71 SER72 ALA73 ASP74 ALA75 THR76 THR77 TYR78 ASP79 CYS80 VAL81 PRO82 PHE83 ASN84 LEU85 PRO86 ARG87 VAL88 TRP89 SER90 LEU91 ALA92 ARG93 CYS94 TYR95 SER96 MET97 TRP98 LYS99 PRO100 THR101 ARG102 TRP103 ASP104 VAL105 VAL106 TYR107 LEU108 PRO109 GLU110 VAL111 SER112 ALA113 THR114 VAL115 ALA116 GLY117 SER118 ILE119 GLU120 MET121 CYS122 PHE123 LEU124 TYR125 ASP126 TYR127 ALA128 ASP129 THR130 ILE131 PRO132 ARG133 TYR134 THR135 GLY136 LYS137 MET138 SER139 ARG140 THR141 ALA142 GLY143 PHE144 VAL145 THR146 SER147 SER148 VAL149 TRP150 TYR151 GLY152 ALA153 GLU154 GLY155 CYS156 HIS157 LEU158 LEU159 SER160 GLY161 GLY162 SER163 ALA164 ARG165 ASN166 ALA167 VAL168 VAL169 ALA170 SER171 MET172 ASP173 CYS174 SER175 ARG176 VAL177 GLY178 TRP179 LYS180 ARG181 VAL182 THR183 SER184 SER185 ILE186 PRO187 SER188 SER189 VAL190 ASP191 PRO192 ASN193 VAL194 VAL195 ASN196 THR197 ILE198 LEU199 PRO200 ALA201 ARG202 LEU203 ALA204 VAL205 ARG206 SER207 SER208 ILE209 LYS210 PRO211 THR212 VAL213 SER214 ASP215 THR216 PRO217 GLY218 LYS219 LEU220 TYR221 VAL222 ILE223 ALA224 SER225 MET226 VAL227 LEU228 ARG229 ASP230 PRO231 VAL232 ASP233 PRO234 THR235 LEU236 ASN237 THR238 |
Unit 2 | LEU50 SER51 SER52 ASN53 THR54 TRP55 PRO56 LEU57 HIS58 SER59 VAL60 GLU61 PHE62 LEU63 ALA64 ASP65 PHE66 LYS67 ARG68 SER69 SER70 THR71 SER72 ALA73 ASP74 ALA75 THR76 THR77 TYR78 ASP79 CYS80 VAL81 PRO82 PHE83 ASN84 LEU85 PRO86 ARG87 VAL88 TRP89 SER90 LEU91 ALA92 ARG93 CYS94 TYR95 SER96 MET97 TRP98 LYS99 PRO100 THR101 ARG102 TRP103 ASP104 VAL105 VAL106 TYR107 LEU108 PRO109 GLU110 VAL111 SER112 ALA113 THR114 VAL115 ALA116 GLY117 SER118 ILE119 GLU120 MET121 CYS122 PHE123 LEU124 TYR125 ASP126 TYR127 ALA128 ASP129 THR130 ILE131 PRO132 ARG133 TYR134 THR135 GLY136 LYS137 MET138 SER139 ARG140 THR141 ALA142 GLY143 PHE144 VAL145 THR146 SER147 SER148 VAL149 TRP150 TYR151 GLY152 ALA153 GLU154 GLY155 CYS156 HIS157 LEU158 LEU159 SER160 GLY161 GLY162 SER163 ALA164 ARG165 ASN166 ALA167 VAL168 VAL169 ALA170 SER171 MET172 ASP173 CYS174 SER175 ARG176 VAL177 GLY178 TRP179 LYS180 ARG181 VAL182 THR183 SER184 SER185 ILE186 PRO187 SER188 SER189 VAL190 ASP191 PRO192 ASN193 VAL194 VAL195 ASN196 THR197 ILE198 LEU199 PRO200 ALA201 ARG202 LEU203 ALA204 VAL205 ARG206 SER207 SER208 ILE209 LYS210 PRO211 THR212 VAL213 SER214 ASP215 THR216 PRO217 GLY218 LYS219 LEU220 TYR221 VAL222 ILE223 ALA224 SER225 MET226 VAL227 LEU228 ARG229 ASP230 PRO231 VAL232 ASP233 PRO234 THR235 LEU236 ASN237 THR238 |
Unit 3 | ALA27 GLU28 PRO29 GLN30 LEU31 GLN32 ARG33 ALA34 PRO35 VAL36 ALA37 GLN38 ALA39 SER40 ARG41 ILE42 SER43 GLY44 THR45 VAL46 PRO47 GLY48 PRO49 LEU50 SER51 SER52 ASN53 THR54 TRP55 PRO56 LEU57 HIS58 SER59 VAL60 GLU61 PHE62 LEU63 ALA64 ASP65 PHE66 LYS67 ARG68 SER69 SER70 THR71 SER72 ALA73 ASP74 ALA75 THR76 THR77 TYR78 ASP79 CYS80 VAL81 PRO82 PHE83 ASN84 LEU85 PRO86 ARG87 VAL88 TRP89 SER90 LEU91 ALA92 ARG93 CYS94 TYR95 SER96 MET97 TRP98 LYS99 PRO100 THR101 ARG102 TRP103 ASP104 VAL105 VAL106 TYR107 LEU108 PRO109 GLU110 VAL111 SER112 ALA113 THR114 VAL115 ALA116 GLY117 SER118 ILE119 GLU120 MET121 CYS122 PHE123 LEU124 TYR125 ASP126 TYR127 ALA128 ASP129 THR130 ILE131 PRO132 ARG133 TYR134 THR135 GLY136 LYS137 MET138 SER139 ARG140 THR141 ALA142 GLY143 PHE144 VAL145 THR146 SER147 SER148 VAL149 TRP150 TYR151 GLY152 ALA153 GLU154 GLY155 CYS156 HIS157 LEU158 LEU159 SER160 GLY161 GLY162 SER163 ALA164 ARG165 ASN166 ALA167 VAL168 VAL169 ALA170 SER171 MET172 ASP173 CYS174 SER175 ARG176 VAL177 GLY178 TRP179 LYS180 ARG181 VAL182 THR183 SER184 SER185 ILE186 PRO187 SER188 SER189 VAL190 ASP191 PRO192 ASN193 VAL194 VAL195 ASN196 THR197 ILE198 LEU199 PRO200 ALA201 ARG202 LEU203 ALA204 VAL205 ARG206 SER207 SER208 ILE209 LYS210 PRO211 THR212 VAL213 SER214 ASP215 THR216 PRO217 GLY218 LYS219 LEU220 TYR221 VAL222 ILE223 ALA224 SER225 MET226 VAL227 LEU228 ARG229 ASP230 PRO231 VAL232 ASP233 PRO234 THR235 LEU236 ASN237 THR238 |
Unit 4 | CA1002 |
Unit 5 | CA1003 |
Unit 6 | CA1001 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |