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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY CRYSTAL STRUCTURE AT 2.7 ANGSTROMS RESOLUTION OF TERNA BETWEEN THE Y65F MUTANT OF E-COLI SERINE HYDROXYMETHYLTRANS GLYCINE AND 5-FORMYL TETRAHYDROFOLATE
Keywords FUNCTIONAL MUTANT, HYDROXYMETHYLTRANSFERASE, AAT-LIKE FOLD, CARBON METABOLISM, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1EQB     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SERINE HYDROXYMETHYLTRANSFERASE  A 416 3161 0
2  Protein   SERINE HYDROXYMETHYLTRANSFERASE  B 417 3177 0
3  Protein   SERINE HYDROXYMETHYLTRANSFERASE  C 417 3161 0
4  Protein   SERINE HYDROXYMETHYLTRANSFERASE  D 417 3160 0
5  Protein   SERINE HYDROXYMETHYLTRANSFERASE  A 3 0 54
6  Protein   SERINE HYDROXYMETHYLTRANSFERASE  B 3 0 54
7  Protein   SERINE HYDROXYMETHYLTRANSFERASE  C 3 0 54
8  Protein   SERINE HYDROXYMETHYLTRANSFERASE  D 3 0 54
9 Water     287 0 287
total       1966 12659 503
Proteins
Unit 1 LEU2 LYS3 ARG4 GLU5 MET6 ASN7 ILE8 ALA9 ASP10 TYR11 ASP12 ALA13 GLU14 LEU15 TRP16 GLN17 ALA18 MET19 GLU20 GLN21 GLU22 LYS23 VAL24 ARG25 GLN26 GLU27 GLU28 HIS29 ILE30 GLU31 LEU32 ILE33 ALA34 SER35 GLU36 ASN37 TYR38 THR39 SER40 PRO41 ARG42 VAL43 MET44 GLN45 ALA46 GLN47 GLY48 SER49 GLN50 LEU51 THR52 ASN53 LYS54 TYR55 ALA56 GLU57 GLY58 TYR59 PRO60 GLY61 LYS62 ARG63 TYR64 PHE65 GLY66 GLY67 CYS68 GLU69 TYR70 VAL71 ASP72 ILE73 VAL74 GLU75 GLN76 LEU77 ALA78 ILE79 ASP80 ARG81 ALA82 LYS83 GLU84 LEU85 PHE86 GLY87 ALA88 ASP89 TYR90 ALA91 ASN92 VAL93 GLN94 PRO95 HIS96 SER97 GLY98 SER99 GLN100 ALA101 ASN102 PHE103 ALA104 VAL105 TYR106 THR107 ALA108 LEU109 LEU110 GLU111 PRO112 GLY113 ASP114 THR115 VAL116 LEU117 GLY118 MET119 ASN120 LEU121 ALA122 HIS123 GLY124 GLY125 HIS126 LEU127 THR128 HIS129 GLY130 SER131 PRO132 VAL133 ASN134 PHE135 SER136 GLY137 LYS138 LEU139 TYR140 ASN141 ILE142 VAL143 PRO144 TYR145 GLY146 ILE147 ASP148 ALA149 THR150 GLY151 HIS152 ILE153 ASP154 TYR155 ALA156 ASP157 LEU158 GLU159 LYS160 GLN161 ALA162 LYS163 GLU164 HIS165 LYS166 PRO167 LYS168 MET169 ILE170 ILE171 GLY172 GLY173 PHE174 SER175 ALA176 TYR177 SER178 GLY179 VAL180 VAL181 ASP182 TRP183 ALA184 LYS185 MET186 ARG187 GLU188 ILE189 ALA190 ASP191 SER192 ILE193 GLY194 ALA195 TYR196 LEU197 PHE198 VAL199 ASP200 MET201 ALA202 HIS203 VAL204 ALA205 GLY206 LEU207 VAL208 ALA209 ALA210 GLY211 VAL212 TYR213 PRO214 ASN215 PRO216 VAL217 PRO218 HIS219 ALA220 HIS221 VAL222 VAL223 THR224 THR225 THR226 THR227 HIS228 LYS229 THR230 LEU231 ALA232 GLY233 PRO234 ARG235 GLY236 GLY237 LEU238 ILE239 LEU240 ALA241 LYS242 GLY243 GLY244 SER245 GLU246 GLU247 LEU248 TYR249 LYS250 LYS251 LEU252 ASN253 SER254 ALA255 VAL256 PHE257 PRO258 GLY259 GLY260 GLN261 GLY262 GLY263 PRO264 LEU265 MET266 HIS267 VAL268 ILE269 ALA270 GLY271 LYS272 ALA273 VAL274 ALA275 LEU276 LYS277 GLU278 ALA279 MET280 GLU281 PRO282 GLU283 PHE284 LYS285 THR286 TYR287 GLN288 GLN289 GLN290 VAL291 ALA292 LYS293 ASN294 ALA295 LYS296 ALA297 MET298 VAL299 GLU300 VAL301 PHE302 LEU303 GLU304 ARG305 GLY306 TYR307 LYS308 VAL309 VAL310 SER311 GLY312 GLY313 THR314 ASP315 ASN316 HIS317 LEU318 PHE319 LEU320 VAL321 ASP322 LEU323 VAL324 ASP325 LYS326 ASN327 LEU328 THR329 GLY330 LYS331 GLU332 ALA333 ASP334 ALA335 ALA336 LEU337 GLY338 ARG339 ALA340 ASN341 ILE342 THR343 VAL344 ASN345 LYS346 ASN347 SER348 VAL349 PRO350 ASN351 ASP352 PRO353 LYS354 SER355 PRO356 PHE357 VAL358 THR359 SER360 GLY361 ILE362 ARG363 VAL364 GLY365 THR366 PRO367 ALA368 ILE369 THR370 ARG371 ARG372 GLY373 PHE374 LYS375 GLU376 ALA377 GLU378 ALA379 LYS380 GLU381 LEU382 ALA383 GLY384 TRP385 MET386 CYS387 ASP388 VAL389 LEU390 ASP391 SER392 ILE393 ASN394 ASP395 GLU396 ALA397 VAL398 ILE399 GLU400 ARG401 ILE402 LYS403 GLY404 LYS405 VAL406 LEU407 ASP408 ILE409 CYS410 ALA411 ARG412 TYR413 PRO414 VAL415 TYR416 ALA417
Unit 2 MET1 LEU2 LYS3 ARG4 GLU5 MET6 ASN7 ILE8 ALA9 ASP10 TYR11 ASP12 ALA13 GLU14 LEU15 TRP16 GLN17 ALA18 MET19 GLU20 GLN21 GLU22 LYS23 VAL24 ARG25 GLN26 GLU27 GLU28 HIS29 ILE30 GLU31 LEU32 ILE33 ALA34 SER35 GLU36 ASN37 TYR38 THR39 SER40 PRO41 ARG42 VAL43 MET44 GLN45 ALA46 GLN47 GLY48 SER49 GLN50 LEU51 THR52 ASN53 LYS54 TYR55 ALA56 GLU57 GLY58 TYR59 PRO60 GLY61 LYS62 ARG63 TYR64 PHE65 GLY66 GLY67 CYS68 GLU69 TYR70 VAL71 ASP72 ILE73 VAL74 GLU75 GLN76 LEU77 ALA78 ILE79 ASP80 ARG81 ALA82 LYS83 GLU84 LEU85 PHE86 GLY87 ALA88 ASP89 TYR90 ALA91 ASN92 VAL93 GLN94 PRO95 HIS96 SER97 GLY98 SER99 GLN100 ALA101 ASN102 PHE103 ALA104 VAL105 TYR106 THR107 ALA108 LEU109 LEU110 GLU111 PRO112 GLY113 ASP114 THR115 VAL116 LEU117 GLY118 MET119 ASN120 LEU121 ALA122 HIS123 GLY124 GLY125 HIS126 LEU127 THR128 HIS129 GLY130 SER131 PRO132 VAL133 ASN134 PHE135 SER136 GLY137 LYS138 LEU139 TYR140 ASN141 ILE142 VAL143 PRO144 TYR145 GLY146 ILE147 ASP148 ALA149 THR150 GLY151 HIS152 ILE153 ASP154 TYR155 ALA156 ASP157 LEU158 GLU159 LYS160 GLN161 ALA162 LYS163 GLU164 HIS165 LYS166 PRO167 LYS168 MET169 ILE170 ILE171 GLY172 GLY173 PHE174 SER175 ALA176 TYR177 SER178 GLY179 VAL180 VAL181 ASP182 TRP183 ALA184 LYS185 MET186 ARG187 GLU188 ILE189 ALA190 ASP191 SER192 ILE193 GLY194 ALA195 TYR196 LEU197 PHE198 VAL199 ASP200 MET201 ALA202 HIS203 VAL204 ALA205 GLY206 LEU207 VAL208 ALA209 ALA210 GLY211 VAL212 TYR213 PRO214 ASN215 PRO216 VAL217 PRO218 HIS219 ALA220 HIS221 VAL222 VAL223 THR224 THR225 THR226 THR227 HIS228 LYS229 THR230 LEU231 ALA232 GLY233 PRO234 ARG235 GLY236 GLY237 LEU238 ILE239 LEU240 ALA241 LYS242 GLY243 GLY244 SER245 GLU246 GLU247 LEU248 TYR249 LYS250 LYS251 LEU252 ASN253 SER254 ALA255 VAL256 PHE257 PRO258 GLY259 GLY260 GLN261 GLY262 GLY263 PRO264 LEU265 MET266 HIS267 VAL268 ILE269 ALA270 GLY271 LYS272 ALA273 VAL274 ALA275 LEU276 LYS277 GLU278 ALA279 MET280 GLU281 PRO282 GLU283 PHE284 LYS285 THR286 TYR287 GLN288 GLN289 GLN290 VAL291 ALA292 LYS293 ASN294 ALA295 LYS296 ALA297 MET298 VAL299 GLU300 VAL301 PHE302 LEU303 GLU304 ARG305 GLY306 TYR307 LYS308 VAL309 VAL310 SER311 GLY312 GLY313 THR314 ASP315 ASN316 HIS317 LEU318 PHE319 LEU320 VAL321 ASP322 LEU323 VAL324 ASP325 LYS326 ASN327 LEU328 THR329 GLY330 LYS331 GLU332 ALA333 ASP334 ALA335 ALA336 LEU337 GLY338 ARG339 ALA340 ASN341 ILE342 THR343 VAL344 ASN345 LYS346 ASN347 SER348 VAL349 PRO350 ASN351 ASP352 PRO353 LYS354 SER355 PRO356 PHE357 VAL358 THR359 SER360 GLY361 ILE362 ARG363 VAL364 GLY365 THR366 PRO367 ALA368 ILE369 THR370 ARG371 ARG372 GLY373 PHE374 LYS375 GLU376 ALA377 GLU378 ALA379 LYS380 GLU381 LEU382 ALA383 GLY384 TRP385 MET386 CYS387 ASP388 VAL389 LEU390 ASP391 SER392 ILE393 ASN394 ASP395 GLU396 ALA397 VAL398 ILE399 GLU400 ARG401 ILE402 LYS403 GLY404 LYS405 VAL406 LEU407 ASP408 ILE409 CYS410 ALA411 ARG412 TYR413 PRO414 VAL415 TYR416 ALA417
Unit 3 MET1 LEU2 LYS3 ARG4 GLU5 MET6 ASN7 ILE8 ALA9 ASP10 TYR11 ASP12 ALA13 GLU14 LEU15 TRP16 GLN17 ALA18 MET19 GLU20 GLN21 GLU22 LYS23 VAL24 ARG25 GLN26 GLU27 GLU28 HIS29 ILE30 GLU31 LEU32 ILE33 ALA34 SER35 GLU36 ASN37 TYR38 THR39 SER40 PRO41 ARG42 VAL43 MET44 GLN45 ALA46 GLN47 GLY48 SER49 GLN50 LEU51 THR52 ASN53 LYS54 TYR55 ALA56 GLU57 GLY58 TYR59 PRO60 GLY61 LYS62 ARG63 TYR64 PHE65 GLY66 GLY67 CYS68 GLU69 TYR70 VAL71 ASP72 ILE73 VAL74 GLU75 GLN76 LEU77 ALA78 ILE79 ASP80 ARG81 ALA82 LYS83 GLU84 LEU85 PHE86 GLY87 ALA88 ASP89 TYR90 ALA91 ASN92 VAL93 GLN94 PRO95 HIS96 SER97 GLY98 SER99 GLN100 ALA101 ASN102 PHE103 ALA104 VAL105 TYR106 THR107 ALA108 LEU109 LEU110 GLU111 PRO112 GLY113 ASP114 THR115 VAL116 LEU117 GLY118 MET119 ASN120 LEU121 ALA122 HIS123 GLY124 GLY125 HIS126 LEU127 THR128 HIS129 GLY130 SER131 PRO132 VAL133 ASN134 PHE135 SER136 GLY137 LYS138 LEU139 TYR140 ASN141 ILE142 VAL143 PRO144 TYR145 GLY146 ILE147 ASP148 ALA149 THR150 GLY151 HIS152 ILE153 ASP154 TYR155 ALA156 ASP157 LEU158 GLU159 LYS160 GLN161 ALA162 LYS163 GLU164 HIS165 LYS166 PRO167 LYS168 MET169 ILE170 ILE171 GLY172 GLY173 PHE174 SER175 ALA176 TYR177 SER178 GLY179 VAL180 VAL181 ASP182 TRP183 ALA184 LYS185 MET186 ARG187 GLU188 ILE189 ALA190 ASP191 SER192 ILE193 GLY194 ALA195 TYR196 LEU197 PHE198 VAL199 ASP200 MET201 ALA202 HIS203 VAL204 ALA205 GLY206 LEU207 VAL208 ALA209 ALA210 GLY211 VAL212 TYR213 PRO214 ASN215 PRO216 VAL217 PRO218 HIS219 ALA220 HIS221 VAL222 VAL223 THR224 THR225 THR226 THR227 HIS228 LYS229 THR230 LEU231 ALA232 GLY233 PRO234 ARG235 GLY236 GLY237 LEU238 ILE239 LEU240 ALA241 LYS242 GLY243 GLY244 SER245 GLU246 GLU247 LEU248 TYR249 LYS250 LYS251 LEU252 ASN253 SER254 ALA255 VAL256 PHE257 PRO258 GLY259 GLY260 GLN261 GLY262 GLY263 PRO264 LEU265 MET266 HIS267 VAL268 ILE269 ALA270 GLY271 LYS272 ALA273 VAL274 ALA275 LEU276 LYS277 GLU278 ALA279 MET280 GLU281 PRO282 GLU283 PHE284 LYS285 THR286 TYR287 GLN288 GLN289 GLN290 VAL291 ALA292 LYS293 ASN294 ALA295 LYS296 ALA297 MET298 VAL299 GLU300 VAL301 PHE302 LEU303 GLU304 ARG305 GLY306 TYR307 LYS308 VAL309 VAL310 SER311 GLY312 GLY313 THR314 ASP315 ASN316 HIS317 LEU318 PHE319 LEU320 VAL321 ASP322 LEU323 VAL324 ASP325 LYS326 ASN327 LEU328 THR329 GLY330 LYS331 GLU332 ALA333 ASP334 ALA335 ALA336 LEU337 GLY338 ARG339 ALA340 ASN341 ILE342 THR343 VAL344 ASN345 LYS346 ASN347 SER348 VAL349 PRO350 ASN351 ASP352 PRO353 LYS354 SER355 PRO356 PHE357 VAL358 THR359 SER360 GLY361 ILE362 ARG363 VAL364 GLY365 THR366 PRO367 ALA368 ILE369 THR370 ARG371 ARG372 GLY373 PHE374 LYS375 GLU376 ALA377 GLU378 ALA379 LYS380 GLU381 LEU382 ALA383 GLY384 TRP385 MET386 CYS387 ASP388 VAL389 LEU390 ASP391 SER392 ILE393 ASN394 ASP395 GLU396 ALA397 VAL398 ILE399 GLU400 ARG401 ILE402 LYS403 GLY404 LYS405 VAL406 LEU407 ASP408 ILE409 CYS410 ALA411 ARG412 TYR413 PRO414 VAL415 TYR416 ALA417
Unit 4 MET1 LEU2 LYS3 ARG4 GLU5 MET6 ASN7 ILE8 ALA9 ASP10 TYR11 ASP12 ALA13 GLU14 LEU15 TRP16 GLN17 ALA18 MET19 GLU20 GLN21 GLU22 LYS23 VAL24 ARG25 GLN26 GLU27 GLU28 HIS29 ILE30 GLU31 LEU32 ILE33 ALA34 SER35 GLU36 ASN37 TYR38 THR39 SER40 PRO41 ARG42 VAL43 MET44 GLN45 ALA46 GLN47 GLY48 SER49 GLN50 LEU51 THR52 ASN53 LYS54 TYR55 ALA56 GLU57 GLY58 TYR59 PRO60 GLY61 LYS62 ARG63 TYR64 PHE65 GLY66 GLY67 CYS68 GLU69 TYR70 VAL71 ASP72 ILE73 VAL74 GLU75 GLN76 LEU77 ALA78 ILE79 ASP80 ARG81 ALA82 LYS83 GLU84 LEU85 PHE86 GLY87 ALA88 ASP89 TYR90 ALA91 ASN92 VAL93 GLN94 PRO95 HIS96 SER97 GLY98 SER99 GLN100 ALA101 ASN102 PHE103 ALA104 VAL105 TYR106 THR107 ALA108 LEU109 LEU110 GLU111 PRO112 GLY113 ASP114 THR115 VAL116 LEU117 GLY118 MET119 ASN120 LEU121 ALA122 HIS123 GLY124 GLY125 HIS126 LEU127 THR128 HIS129 GLY130 SER131 PRO132 VAL133 ASN134 PHE135 SER136 GLY137 LYS138 LEU139 TYR140 ASN141 ILE142 VAL143 PRO144 TYR145 GLY146 ILE147 ASP148 ALA149 THR150 GLY151 HIS152 ILE153 ASP154 TYR155 ALA156 ASP157 LEU158 GLU159 LYS160 GLN161 ALA162 LYS163 GLU164 HIS165 LYS166 PRO167 LYS168 MET169 ILE170 ILE171 GLY172 GLY173 PHE174 SER175 ALA176 TYR177 SER178 GLY179 VAL180 VAL181 ASP182 TRP183 ALA184 LYS185 MET186 ARG187 GLU188 ILE189 ALA190 ASP191 SER192 ILE193 GLY194 ALA195 TYR196 LEU197 PHE198 VAL199 ASP200 MET201 ALA202 HIS203 VAL204 ALA205 GLY206 LEU207 VAL208 ALA209 ALA210 GLY211 VAL212 TYR213 PRO214 ASN215 PRO216 VAL217 PRO218 HIS219 ALA220 HIS221 VAL222 VAL223 THR224 THR225 THR226 THR227 HIS228 LYS229 THR230 LEU231 ALA232 GLY233 PRO234 ARG235 GLY236 GLY237 LEU238 ILE239 LEU240 ALA241 LYS242 GLY243 GLY244 SER245 GLU246 GLU247 LEU248 TYR249 LYS250 LYS251 LEU252 ASN253 SER254 ALA255 VAL256 PHE257 PRO258 GLY259 GLY260 GLN261 GLY262 GLY263 PRO264 LEU265 MET266 HIS267 VAL268 ILE269 ALA270 GLY271 LYS272 ALA273 VAL274 ALA275 LEU276 LYS277 GLU278 ALA279 MET280 GLU281 PRO282 GLU283 PHE284 LYS285 THR286 TYR287 GLN288 GLN289 GLN290 VAL291 ALA292 LYS293 ASN294 ALA295 LYS296 ALA297 MET298 VAL299 GLU300 VAL301 PHE302 LEU303 GLU304 ARG305 GLY306 TYR307 LYS308 VAL309 VAL310 SER311 GLY312 GLY313 THR314 ASP315 ASN316 HIS317 LEU318 PHE319 LEU320 VAL321 ASP322 LEU323 VAL324 ASP325 LYS326 ASN327 LEU328 THR329 GLY330 LYS331 GLU332 ALA333 ASP334 ALA335 ALA336 LEU337 GLY338 ARG339 ALA340 ASN341 ILE342 THR343 VAL344 ASN345 LYS346 ASN347 SER348 VAL349 PRO350 ASN351 ASP352 PRO353 LYS354 SER355 PRO356 PHE357 VAL358 THR359 SER360 GLY361 ILE362 ARG363 VAL364 GLY365 THR366 PRO367 ALA368 ILE369 THR370 ARG371 ARG372 GLY373 PHE374 LYS375 GLU376 ALA377 GLU378 ALA379 LYS380 GLU381 LEU382 ALA383 GLY384 TRP385 MET386 CYS387 ASP388 VAL389 LEU390 ASP391 SER392 ILE393 ASN394 ASP395 GLU396 ALA397 VAL398 ILE399 GLU400 ARG401 ILE402 LYS403 GLY404 LYS405 VAL406 LEU407 ASP408 ILE409 CYS410 ALA411 ARG412 TYR413 PRO414 VAL415 TYR416 ALA417
Unit 5 PLP1291 GLY1292 FFO1293
Unit 6 PLP2291 GLY2292 FFO2293
Unit 7 PLP3291 GLY3292 FFO3293
Unit 8 PLP4291 GLY4292 FFO4293
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany