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Sequence, Chains, Asymmetric and Biological Units

Title NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2
Keywords RNA, GU PAIR, HYDROGEN BOND, DOUBLE HELIX
Experiment NMR
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1EKD     released     available     available     Quaternary Structure Server  
NDB   1EKD                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 8 258 0
2  RNA    B 8 258 0
total       16 516 0

Nucleic acids
Unit 1 G1 G2 C3 G4 U5 G6 C7 C8
Unit 2 G1 G2 C3 G4 U5 G6 C7 C8

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany