1E9Y - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HELICOBACTER PYLORI UREASE IN COMPLEX W ACETOHYDROXAMIC ACID
• Keywords: HYDROLASE, DODECAMER
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1E9Y	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	UREASE SUBUNIT ALPHA	A	238	1864	0
2	Protein	UREASE SUBUNIT BETA	B	569	4323	12
3	Ligand	UREASE SUBUNIT BETA	B	3	0	7
4	Water			66	0	66
total				876	6187	85

Proteins

Unit 1

MET 1 LYS 2 LEU 3 THR 4 PRO 5 LYS 6 GLU 7 LEU 8 ASP 9 LYS 10 LEU 11 MET 12 LEU 13 HIS 14 TYR 15 ALA 16 GLY 17 GLU 18 LEU 19 ALA 20 LYS 21 LYS 22 ARG 23 LYS 24 GLU 25 LYS 26 GLY 27 ILE 28 LYS 29 LEU 30 ASN 31 TYR 32 VAL 33 GLU 34 ALA 35 VAL 36 ALA 37 LEU 38 ILE 39 SER 40 ALA 41 HIS 42 ILE 43 MET 44 GLU 45 GLU 46 ALA 47 ARG 48 ALA 49 GLY 50 LYS 51 LYS 52 THR 53 ALA 54 ALA 55 GLU 56 LEU 57 MET 58 GLN 59 GLU 60 GLY 61 ARG 62 THR 63 LEU 64 LEU 65 LYS 66 PRO 67 ASP 68 ASP 69 VAL 70 MET 71 ASP 72 GLY 73 VAL 74 ALA 75 SER 76 MET 77 ILE 78 HIS 79 GLU 80 VAL 81 GLY 82 ILE 83 GLU 84 ALA 85 MET 86 PHE 87 PRO 88 ASP 89 GLY 90 THR 91 LYS 92 LEU 93 VAL 94 THR 95 VAL 96 HIS 97 THR 98 PRO 99 ILE 100 GLU 101 ALA 102 ASN 103 GLY 104 LYS 105 LEU 106 VAL 107 PRO 108 GLY 109 GLU 110 LEU 111 PHE 112 LEU 113 LYS 114 ASN 115 GLU 116 ASP 117 ILE 118 THR 119 ILE 120 ASN 121 GLU 122 GLY 123 LYS 124 LYS 125 ALA 126 VAL 127 SER 128 VAL 129 LYS 130 VAL 131 LYS 132 ASN 133 VAL 134 GLY 135 ASP 136 ARG 137 PRO 138 VAL 139 GLN 140 ILE 141 GLY 142 SER 143 HIS 144 PHE 145 HIS 146 PHE 147 PHE 148 GLU 149 VAL 150 ASN 151 ARG 152 CYS 153 LEU 154 ASP 155 PHE 156 ASP 157 ARG 158 GLU 159 LYS 160 THR 161 PHE 162 GLY 163 LYS 164 ARG 165 LEU 166 ASP 167 ILE 168 ALA 169 ALA 170 GLY 171 THR 172 ALA 173 VAL 174 ARG 175 PHE 176 GLU 177 PRO 178 GLY 179 GLU 180 GLU 181 LYS 182 SER 183 VAL 184 GLU 185 LEU 186 ILE 187 ASP 188 ILE 189 GLY 190 GLY 191 ASN 192 ARG 193 ARG 194 ILE 195 PHE 196 GLY 197 PHE 198 ASN 199 ALA 200 LEU 201 VAL 202 ASP 203 ARG 204 GLN 205 ALA 206 ASP 207 ASN 208 GLU 209 SER 210 LYS 211 LYS 212 ILE 213 ALA 214 LEU 215 HIS 216 ARG 217 ALA 218 LYS 219 GLU 220 ARG 221 GLY 222 PHE 223 HIS 224 GLY 225 ALA 226 LYS 227 SER 228 ASP 229 ASP 230 ASN 231 TYR 232 VAL 233 LYS 234 THR 235 ILE 236 LYS 237 GLU 238

Unit 2

MET 1 LYS 2 LYS 3 ILE 4 SER 5 ARG 6 LYS 7 GLU 8 TYR 9 VAL 10 SER 11 MET 12 TYR 13 GLY 14 PRO 15 THR 16 THR 17 GLY 18 ASP 19 LYS 20 VAL 21 ARG 22 LEU 23 GLY 24 ASP 25 THR 26 ASP 27 LEU 28 ILE 29 ALA 30 GLU 31 VAL 32 GLU 33 HIS 34 ASP 35 TYR 36 THR 37 ILE 38 TYR 39 GLY 40 GLU 41 GLU 42 LEU 43 LYS 44 PHE 45 GLY 46 GLY 47 GLY 48 LYS 49 THR 50 LEU 51 ARG 52 GLU 53 GLY 54 MET 55 SER 56 GLN 57 SER 58 ASN 59 ASN 60 PRO 61 SER 62 LYS 63 GLU 64 GLU 65 LEU 66 ASP 67 LEU 68 ILE 69 ILE 70 THR 71 ASN 72 ALA 73 LEU 74 ILE 75 VAL 76 ASP 77 TYR 78 THR 79 GLY 80 ILE 81 TYR 82 LYS 83 ALA 84 ASP 85 ILE 86 GLY 87 ILE 88 LYS 89 ASP 90 GLY 91 LYS 92 ILE 93 ALA 94 GLY 95 ILE 96 GLY 97 LYS 98 GLY 99 GLY 100 ASN 101 LYS 102 ASP 103 MET 104 GLN 105 ASP 106 GLY 107 VAL 108 LYS 109 ASN 110 ASN 111 LEU 112 SER 113 VAL 114 GLY 115 PRO 116 ALA 117 THR 118 GLU 119 ALA 120 LEU 121 ALA 122 GLY 123 GLU 124 GLY 125 LEU 126 ILE 127 VAL 128 THR 129 ALA 130 GLY 131 GLY 132 ILE 133 ASP 134 THR 135 HIS 136 ILE 137 HIS 138 PHE 139 ILE 140 SER 141 PRO 142 GLN 143 GLN 144 ILE 145 PRO 146 THR 147 ALA 148 PHE 149 ALA 150 SER 151 GLY 152 VAL 153 THR 154 THR 155 MET 156 ILE 157 GLY 158 GLY 159 GLY 160 THR 161 GLY 162 PRO 163 ALA 164 ASP 165 GLY 166 THR 167 ASN 168 ALA 169 THR 170 THR 171 ILE 172 THR 173 PRO 174 GLY 175 ARG 176 ARG 177 ASN 178 LEU 179 LYS 180 TRP 181 MET 182 LEU 183 ARG 184 ALA 185 ALA 186 GLU 187 GLU 188 TYR 189 SER 190 MET 191 ASN 192 LEU 193 GLY 194 PHE 195 LEU 196 ALA 197 LYS 198 GLY 199 ASN 200 ALA 201 SER 202 ASN 203 ASP 204 ALA 205 SER 206 LEU 207 ALA 208 ASP 209 GLN 210 ILE 211 GLU 212 ALA 213 GLY 214 ALA 215 ILE 216 GLY 217 PHE 218 KCX 219 ILE 220 HIS 221 GLU 222 ASP 223 TRP 224 GLY 225 THR 226 THR 227 PRO 228 SER 229 ALA 230 ILE 231 ASN 232 HIS 233 ALA 234 LEU 235 ASP 236 VAL 237 ALA 238 ASP 239 LYS 240 TYR 241 ASP 242 VAL 243 GLN 244 VAL 245 ALA 246 ILE 247 HIS 248 THR 249 ASP 250 THR 251 LEU 252 ASN 253 GLU 254 ALA 255 GLY 256 CYS 257 VAL 258 GLU 259 ASP 260 THR 261 MET 262 ALA 263 ALA 264 ILE 265 ALA 266 GLY 267 ARG 268 THR 269 MET 270 HIS 271 THR 272 PHE 273 HIS 274 THR 275 GLU 276 GLY 277 ALA 278 GLY 279 GLY 280 GLY 281 HIS 282 ALA 283 PRO 284 ASP 285 ILE 286 ILE 287 LYS 288 VAL 289 ALA 290 GLY 291 GLU 292 HIS 293 ASN 294 ILE 295 LEU 296 PRO 297 ALA 298 SER 299 THR 300 ASN 301 PRO 302 THR 303 ILE 304 PRO 305 PHE 306 THR 307 VAL 308 ASN 309 THR 310 GLU 311 ALA 312 GLU 313 HIS 314 MET 315 ASP 316 MET 317 LEU 318 MET 319 VAL 320 CYS 321 HIS 322 HIS 323 LYS 324 ASP 325 LYS 326 SER 327 ILE 328 LYS 329 GLU 330 ASP 331 VAL 332 GLN 333 PHE 334 ALA 335 ASP 336 SER 337 ARG 338 ILE 339 ARG 340 PRO 341 GLN 342 THR 343 ILE 344 ALA 345 ALA 346 GLU 347 ASP 348 THR 349 LEU 350 HIS 351 ASP 352 MET 353 GLY 354 ALA 355 PHE 356 SER 357 ILE 358 THR 359 SER 360 SER 361 ASP 362 SER 363 GLN 364 ALA 365 MET 366 GLY 367 ARG 368 VAL 369 GLY 370 GLU 371 VAL 372 ILE 373 THR 374 ARG 375 THR 376 TRP 377 GLN 378 THR 379 ALA 380 ASP 381 LYS 382 ASN 383 LYS 384 LYS 385 GLU 386 PHE 387 GLY 388 ARG 389 LEU 390 LYS 391 GLU 392 GLU 393 LYS 394 GLY 395 ASP 396 ASN 397 ASP 398 ASN 399 PHE 400 ARG 401 ILE 402 LYS 403 ARG 404 TYR 405 LEU 406 SER 407 LYS 408 TYR 409 THR 410 ILE 411 ASN 412 PRO 413 ALA 414 ILE 415 ALA 416 HIS 417 GLY 418 ILE 419 SER 420 GLU 421 TYR 422 VAL 423 GLY 424 SER 425 VAL 426 GLU 427 VAL 428 GLY 429 LYS 430 VAL 431 ALA 432 ASP 433 LEU 434 VAL 435 LEU 436 TRP 437 SER 438 PRO 439 ALA 440 PHE 441 PHE 442 GLY 443 VAL 444 LYS 445 PRO 446 ASN 447 MET 448 ILE 449 ILE 450 LYS 451 GLY 452 GLY 453 PHE 454 ILE 455 ALA 456 LEU 457 SER 458 GLN 459 MET 460 GLY 461 ASP 462 ALA 463 ASN 464 ALA 465 SER 466 ILE 467 PRO 468 THR 469 PRO 470 GLN 471 PRO 472 VAL 473 TYR 474 TYR 475 ARG 476 GLU 477 MET 478 PHE 479 ALA 480 HIS 481 HIS 482 GLY 483 LYS 484 ALA 485 LYS 486 TYR 487 ASP 488 ALA 489 ASN 490 ILE 491 THR 492 PHE 493 VAL 494 SER 495 GLN 496 ALA 497 ALA 498 TYR 499 ASP 500 LYS 501 GLY 502 ILE 503 LYS 504 GLU 505 GLU 506 LEU 507 GLY 508 LEU 509 GLU 510 ARG 511 GLN 512 VAL 513 LEU 514 PRO 515 VAL 516 LYS 517 ASN 518 CYS 519 ARG 520 ASN 521 VAL 522 THR 523 LYS 524 LYS 525 ASP 526 MET 527 GLN 528 PHE 529 ASN 530 ASN 531 THR 532 THR 533 ALA 534 HIS 535 ILE 536 GLU 537 VAL 538 ASN 539 PRO 540 GLU 541 THR 542 TYR 543 HIS 544 VAL 545 PHE 546 VAL 547 ASP 548 GLY 549 LYS 550 GLU 551 VAL 552 THR 553 SER 554 LYS 555 PRO 556 ALA 557 ASN 558 LYS 559 VAL 560 SER 561 LEU 562 ALA 563 GLN 564 LEU 565 PHE 566 SER 567 ILE 568 PHE 569

Ligands

Unit 3

HAE 800 NI 3001 NI 3002