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Sequence, Chains, Asymmetric and Biological Units

Title THE NMR STRUCTURE OF THE 38KDA U1A PROTEIN-PIE RNA COMPLEX REVEALS THE BASIS OF COOPERATIVITY IN REGULATION OF POLYADENYLATION BY HUMAN U1A PROTEIN
Keywords RIBONUCLEOPROTEIN-RNA COMPLEX, POLYADENYLATION, PROTEIN PROTEIN INTERACTION, RNA PROTEIN INTERACTION
Experiment NMR
Number of Models  13


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1DZ5     released     available     available     Quaternary Structure Server  
NDB   1DZ5                         


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  A 101 1666 0
2  Protein   U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A  B 101 1666 0
3  RNA    C 22 705 0
4  RNA    D 22 705 0
total       246 4742 0

Proteins
Unit 1 ALA1 VAL2 PRO3 GLU4 THR5 ARG6 PRO7 ASN8 HIS9 THR10 ILE11 TYR12 ILE13 ASN14 ASN15 LEU16 ASN17 GLU18 LYS19 ILE20 LYS21 LYS22 ASP23 GLU24 LEU25 LYS26 LYS27 SER28 LEU29 HIS30 ALA31 ILE32 PHE33 SER34 ARG35 PHE36 GLY37 GLN38 ILE39 LEU40 ASP41 ILE42 LEU43 VAL44 SER45 ARG46 SER47 LEU48 LYS49 MET50 ARG51 GLY52 GLN53 ALA54 PHE55 VAL56 ILE57 PHE58 LYS59 GLU60 VAL61 SER62 SER63 ALA64 THR65 ASN66 ALA67 LEU68 ARG69 SER70 MET71 GLN72 GLY73 PHE74 PRO75 PHE76 TYR77 ASP78 LYS79 PRO80 MET81 ARG82 ILE83 GLN84 TYR85 ALA86 LYS87 THR88 ASP89 SER90 ASP91 ILE92 ILE93 ALA94 LYS95 MET96 LYS97 GLY98 THR99 PHE100 VAL101
Unit 2 ALA1 VAL2 PRO3 GLU4 THR5 ARG6 PRO7 ASN8 HIS9 THR10 ILE11 TYR12 ILE13 ASN14 ASN15 LEU16 ASN17 GLU18 LYS19 ILE20 LYS21 LYS22 ASP23 GLU24 LEU25 LYS26 LYS27 SER28 LEU29 HIS30 ALA31 ILE32 PHE33 SER34 ARG35 PHE36 GLY37 GLN38 ILE39 LEU40 ASP41 ILE42 LEU43 VAL44 SER45 ARG46 SER47 LEU48 LYS49 MET50 ARG51 GLY52 GLN53 ALA54 PHE55 VAL56 ILE57 PHE58 LYS59 GLU60 VAL61 SER62 SER63 ALA64 THR65 ASN66 ALA67 LEU68 ARG69 SER70 MET71 GLN72 GLY73 PHE74 PRO75 PHE76 TYR77 ASP78 LYS79 PRO80 MET81 ARG82 ILE83 GLN84 TYR85 ALA86 LYS87 THR88 ASP89 SER90 ASP91 ILE92 ILE93 ALA94 LYS95 MET96 LYS97 GLY98 THR99 PHE100 VAL101

Nucleic acids
Unit 3 G8 A9 G10 A11 C12 A13 U14 U15 G16 C17 A18 C19 C20 C21 G22 G23 A24 G25 U26 C27 U28 C29
Unit 4 G34 A35 G36 A37 C38 A39 U40 U41 G42 C43 A44 C45 C46 C47 G48 G49 A50 G51 U52 C53 U54 C55

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany