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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF DPS, A FERRITIN HOMOLOG THAT BINDS AND PROTECTS DNA
Keywords DNA-BINDING PROTEIN, FERRITIN, IRON SEQUESTRATION, STATIONARY PHASE, OXIDATIVE DAMAGE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1DPS     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DPS  A 159 1252 0
2  Protein   DPS  B 154 1221 0
3  Protein   DPS  C 154 1221 0
4  Protein   DPS  D 156 1236 0
5  Protein   DPS  E 154 1221 0
6  Protein   DPS  F 154 1221 0
7  Protein   DPS  G 154 1221 0
8  Protein   DPS  H 154 1221 0
9  Protein   DPS  I 154 1221 0
10  Protein   DPS  J 154 1221 0
11  Protein   DPS  K 154 1221 0
12  Protein   DPS  L 154 1221 0
13  Ligand   DPS  A 1 0 1
14  Ligand   DPS  B 1 0 1
15  Ligand   DPS  C 1 0 1
16  Ligand   DPS  D 1 0 1
17  Ligand   DPS  E 1 0 1
18  Ligand   DPS  F 1 0 1
19  Ligand   DPS  G 1 0 1
20  Ligand   DPS  H 1 0 1
21  Ligand   DPS  I 1 0 1
22  Ligand   DPS  J 1 0 1
23  Ligand   DPS  K 1 0 1
24  Ligand   DPS  L 1 0 1
25 Water     1397 0 1397
total       3264 14698 1409

Proteins
Unit 1 SER9 LYS10 ALA11 THR12 ASN13 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 2 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 3 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 4 THR12 ASN13 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 5 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 6 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 7 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 8 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 9 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 10 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 11 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167
Unit 12 LEU14 LEU15 TYR16 THR17 ARG18 ASN19 ASP20 VAL21 SER22 ASP23 SER24 GLU25 LYS26 LYS27 ALA28 THR29 VAL30 GLU31 LEU32 LEU33 ASN34 ARG35 GLN36 VAL37 ILE38 GLN39 PHE40 ILE41 ASP42 LEU43 SER44 LEU45 ILE46 THR47 LYS48 GLN49 ALA50 HIS51 TRP52 ASN53 MET54 ARG55 GLY56 ALA57 ASN58 PHE59 ILE60 ALA61 VAL62 HIS63 GLU64 MET65 LEU66 ASP67 GLY68 PHE69 ARG70 THR71 ALA72 LEU73 ILE74 ASP75 HIS76 LEU77 ASP78 THR79 MET80 ALA81 GLU82 ARG83 ALA84 VAL85 GLN86 LEU87 GLY88 GLY89 VAL90 ALA91 LEU92 GLY93 THR94 THR95 GLN96 VAL97 ILE98 ASN99 SER100 LYS101 THR102 PRO103 LEU104 LYS105 SER106 TYR107 PRO108 LEU109 ASP110 ILE111 HIS112 ASN113 VAL114 GLN115 ASP116 HIS117 LEU118 LYS119 GLU120 LEU121 ALA122 ASP123 ARG124 TYR125 ALA126 ILE127 VAL128 ALA129 ASN130 ASP131 VAL132 ARG133 LYS134 ALA135 ILE136 GLY137 GLU138 ALA139 LYS140 ASP141 ASP142 ASP143 THR144 ALA145 ASP146 ILE147 LEU148 THR149 ALA150 ALA151 SER152 ARG153 ASP154 LEU155 ASP156 LYS157 PHE158 LEU159 TRP160 PHE161 ILE162 GLU163 CYS164 ASN165 ILE166 GLU167

Ligands
Unit 13 NA168
Unit 14 NA168
Unit 15 NA168
Unit 16 NA168
Unit 17 NA168
Unit 18 NA168
Unit 19 NA168
Unit 20 NA168
Unit 21 NA168
Unit 22 NA168
Unit 23 NA168
Unit 24 NA168

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany