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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL ANALYSES OF HUMAN MYELOPEROXIDASE-THIOCYANATE COM
Keywords OXIDOREDUCTASE, PEROXIDASE, INHIBITOR COMPLEX THIOCYANATE, H PEROXIDATION, NEUTROPHIL
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1DNU     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MYELOPEROXIDASE  A 104 838 0
2  Protein   MYELOPEROXIDASE  C 466 3726 7
3  Protein   MYELOPEROXIDASE  B 104 838 0
4  Protein   MYELOPEROXIDASE  D 466 3726 7
5  Ligand    E 6 0 71
6  Ligand    F 6 0 71
7  Ligand   MYELOPEROXIDASE  A 3 0 11
8  Ligand   MYELOPEROXIDASE  C 8 0 89
9  Ligand   MYELOPEROXIDASE  B 3 0 49
10  Ligand   MYELOPEROXIDASE  D 7 0 46
11 Water     839 0 839
total       2012 9128 1190
Proteins
Unit 1 CYS1 PRO2 GLU3 GLN4 ASP5 LYS6 TYR7 ARG8 THR9 ILE10 THR11 GLY12 MET13 CYS14 ASN15 ASN16 ARG17 ARG18 SER19 PRO20 THR21 LEU22 GLY23 ALA24 SER25 ASN26 ARG27 ALA28 PHE29 VAL30 ARG31 TRP32 LEU33 PRO34 ALA35 GLU36 TYR37 GLU38 ASP39 GLY40 PHE41 SER42 LEU43 PRO44 TYR45 GLY46 TRP47 THR48 PRO49 GLY50 VAL51 LYS52 ARG53 ASN54 GLY55 PHE56 PRO57 VAL58 ALA59 LEU60 ALA61 ARG62 ALA63 VAL64 SER65 ASN66 GLU67 ILE68 VAL69 ARG70 PHE71 PRO72 THR73 ASP74 GLN75 LEU76 THR77 PRO78 ASP79 GLN80 GLU81 ARG82 SER83 LEU84 MET85 PHE86 MET87 GLN88 TRP89 GLY90 GLN91 LEU92 LEU93 ASP94 HIS95 ASP96 LEU97 ASP98 PHE99 THR100 PRO101 GLU102 PRO103 ALA104
Unit 2 VAL113 ASN114 CYS115 GLU116 THR117 SER118 CYS119 VAL120 GLN121 GLN122 PRO123 PRO124 CYS125 PHE126 PRO127 LEU128 LYS129 ILE130 PRO131 PRO132 ASN133 ASP134 PRO135 ARG136 ILE137 LYS138 ASN139 GLN140 ALA141 ASP142 CYS143 ILE144 PRO145 PHE146 PHE147 ARG148 SER149 CSO150 PRO151 ALA152 CYS153 PRO154 GLY155 SER156 ASN157 ILE158 THR159 ILE160 ARG161 ASN162 GLN163 ILE164 ASN165 ALA166 LEU167 THR168 SER169 PHE170 VAL171 ASP172 ALA173 SER174 MET175 VAL176 TYR177 GLY178 SER179 GLU180 GLU181 PRO182 LEU183 ALA184 ARG185 ASN186 LEU187 ARG188 ASN189 MET190 SER191 ASN192 GLN193 LEU194 GLY195 LEU196 LEU197 ALA198 VAL199 ASN200 GLN201 ARG202 PHE203 GLN204 ASP205 ASN206 GLY207 ARG208 ALA209 LEU210 LEU211 PRO212 PHE213 ASP214 ASN215 LEU216 HIS217 ASP218 ASP219 PRO220 CYS221 LEU222 LEU223 THR224 ASN225 ARG226 SER227 ALA228 ARG229 ILE230 PRO231 CYS232 PHE233 LEU234 ALA235 GLY236 ASP237 THR238 ARG239 SER240 SER241 GLU242 MET243 PRO244 GLU245 LEU246 THR247 SER248 MET249 HIS250 THR251 LEU252 LEU253 LEU254 ARG255 GLU256 HIS257 ASN258 ARG259 LEU260 ALA261 THR262 GLU263 LEU264 LYS265 SER266 LEU267 ASN268 PRO269 ARG270 TRP271 ASP272 GLY273 GLU274 ARG275 LEU276 TYR277 GLN278 GLU279 ALA280 ARG281 LYS282 ILE283 VAL284 GLY285 ALA286 MET287 VAL288 GLN289 ILE290 ILE291 THR292 TYR293 ARG294 ASP295 TYR296 LEU297 PRO298 LEU299 VAL300 LEU301 GLY302 PRO303 THR304 ALA305 MET306 ARG307 LYS308 TYR309 LEU310 PRO311 THR312 TYR313 ARG314 SER315 TYR316 ASN317 ASP318 SER319 VAL320 ASP321 PRO322 ARG323 ILE324 ALA325 ASN326 VAL327 PHE328 THR329 ASN330 ALA331 PHE332 ARG333 TYR334 GLY335 HIS336 THR337 LEU338 ILE339 GLN340 PRO341 PHE342 MET343 PHE344 ARG345 LEU346 ASP347 ASN348 ARG349 TYR350 GLN351 PRO352 MET353 GLU354 PRO355 ASN356 PRO357 ARG358 VAL359 PRO360 LEU361 SER362 ARG363 VAL364 PHE365 PHE366 ALA367 SER368 TRP369 ARG370 VAL371 VAL372 LEU373 GLU374 GLY375 GLY376 ILE377 ASP378 PRO379 ILE380 LEU381 ARG382 GLY383 LEU384 MET385 ALA386 THR387 PRO388 ALA389 LYS390 LEU391 ASN392 ARG393 GLN394 ASN395 GLN396 ILE397 ALA398 VAL399 ASP400 GLU401 ILE402 ARG403 GLU404 ARG405 LEU406 PHE407 GLU408 GLN409 VAL410 MET411 ARG412 ILE413 GLY414 LEU415 ASP416 LEU417 PRO418 ALA419 LEU420 ASN421 MET422 GLN423 ARG424 SER425 ARG426 ASP427 HIS428 GLY429 LEU430 PRO431 GLY432 TYR433 ASN434 ALA435 TRP436 ARG437 ARG438 PHE439 CYS440 GLY441 LEU442 PRO443 GLN444 PRO445 GLU446 THR447 VAL448 GLY449 GLN450 LEU451 GLY452 THR453 VAL454 LEU455 ARG456 ASN457 LEU458 LYS459 LEU460 ALA461 ARG462 LYS463 LEU464 MET465 GLU466 GLN467 TYR468 GLY469 THR470 PRO471 ASN472 ASN473 ILE474 ASP475 ILE476 TRP477 MET478 GLY479 GLY480 VAL481 SER482 GLU483 PRO484 LEU485 LYS486 ARG487 LYS488 GLY489 ARG490 VAL491 GLY492 PRO493 LEU494 LEU495 ALA496 CYS497 ILE498 ILE499 GLY500 THR501 GLN502 PHE503 ARG504 LYS505 LEU506 ARG507 ASP508 GLY509 ASP510 ARG511 PHE512 TRP513 TRP514 GLU515 ASN516 GLU517 GLY518 VAL519 PHE520 SER521 MET522 GLN523 GLN524 ARG525 GLN526 ALA527 LEU528 ALA529 GLN530 ILE531 SER532 LEU533 PRO534 ARG535 ILE536 ILE537 CYS538 ASP539 ASN540 THR541 GLY542 ILE543 THR544 THR545 VAL546 SER547 LYS548 ASN549 ASN550 ILE551 PHE552 MET553 SER554 ASN555 SER556 TYR557 PRO558 ARG559 ASP560 PHE561 VAL562 ASN563 CYS564 SER565 THR566 LEU567 PRO568 ALA569 LEU570 ASN571 LEU572 ALA573 SER574 TRP575 ARG576 GLU577 ALA578
Unit 3 CYS1 PRO2 GLU3 GLN4 ASP5 LYS6 TYR7 ARG8 THR9 ILE10 THR11 GLY12 MET13 CYS14 ASN15 ASN16 ARG17 ARG18 SER19 PRO20 THR21 LEU22 GLY23 ALA24 SER25 ASN26 ARG27 ALA28 PHE29 VAL30 ARG31 TRP32 LEU33 PRO34 ALA35 GLU36 TYR37 GLU38 ASP39 GLY40 PHE41 SER42 LEU43 PRO44 TYR45 GLY46 TRP47 THR48 PRO49 GLY50 VAL51 LYS52 ARG53 ASN54 GLY55 PHE56 PRO57 VAL58 ALA59 LEU60 ALA61 ARG62 ALA63 VAL64 SER65 ASN66 GLU67 ILE68 VAL69 ARG70 PHE71 PRO72 THR73 ASP74 GLN75 LEU76 THR77 PRO78 ASP79 GLN80 GLU81 ARG82 SER83 LEU84 MET85 PHE86 MET87 GLN88 TRP89 GLY90 GLN91 LEU92 LEU93 ASP94 HIS95 ASP96 LEU97 ASP98 PHE99 THR100 PRO101 GLU102 PRO103 ALA104
Unit 4 VAL113 ASN114 CYS115 GLU116 THR117 SER118 CYS119 VAL120 GLN121 GLN122 PRO123 PRO124 CYS125 PHE126 PRO127 LEU128 LYS129 ILE130 PRO131 PRO132 ASN133 ASP134 PRO135 ARG136 ILE137 LYS138 ASN139 GLN140 ALA141 ASP142 CYS143 ILE144 PRO145 PHE146 PHE147 ARG148 SER149 CSO150 PRO151 ALA152 CYS153 PRO154 GLY155 SER156 ASN157 ILE158 THR159 ILE160 ARG161 ASN162 GLN163 ILE164 ASN165 ALA166 LEU167 THR168 SER169 PHE170 VAL171 ASP172 ALA173 SER174 MET175 VAL176 TYR177 GLY178 SER179 GLU180 GLU181 PRO182 LEU183 ALA184 ARG185 ASN186 LEU187 ARG188 ASN189 MET190 SER191 ASN192 GLN193 LEU194 GLY195 LEU196 LEU197 ALA198 VAL199 ASN200 GLN201 ARG202 PHE203 GLN204 ASP205 ASN206 GLY207 ARG208 ALA209 LEU210 LEU211 PRO212 PHE213 ASP214 ASN215 LEU216 HIS217 ASP218 ASP219 PRO220 CYS221 LEU222 LEU223 THR224 ASN225 ARG226 SER227 ALA228 ARG229 ILE230 PRO231 CYS232 PHE233 LEU234 ALA235 GLY236 ASP237 THR238 ARG239 SER240 SER241 GLU242 MET243 PRO244 GLU245 LEU246 THR247 SER248 MET249 HIS250 THR251 LEU252 LEU253 LEU254 ARG255 GLU256 HIS257 ASN258 ARG259 LEU260 ALA261 THR262 GLU263 LEU264 LYS265 SER266 LEU267 ASN268 PRO269 ARG270 TRP271 ASP272 GLY273 GLU274 ARG275 LEU276 TYR277 GLN278 GLU279 ALA280 ARG281 LYS282 ILE283 VAL284 GLY285 ALA286 MET287 VAL288 GLN289 ILE290 ILE291 THR292 TYR293 ARG294 ASP295 TYR296 LEU297 PRO298 LEU299 VAL300 LEU301 GLY302 PRO303 THR304 ALA305 MET306 ARG307 LYS308 TYR309 LEU310 PRO311 THR312 TYR313 ARG314 SER315 TYR316 ASN317 ASP318 SER319 VAL320 ASP321 PRO322 ARG323 ILE324 ALA325 ASN326 VAL327 PHE328 THR329 ASN330 ALA331 PHE332 ARG333 TYR334 GLY335 HIS336 THR337 LEU338 ILE339 GLN340 PRO341 PHE342 MET343 PHE344 ARG345 LEU346 ASP347 ASN348 ARG349 TYR350 GLN351 PRO352 MET353 GLU354 PRO355 ASN356 PRO357 ARG358 VAL359 PRO360 LEU361 SER362 ARG363 VAL364 PHE365 PHE366 ALA367 SER368 TRP369 ARG370 VAL371 VAL372 LEU373 GLU374 GLY375 GLY376 ILE377 ASP378 PRO379 ILE380 LEU381 ARG382 GLY383 LEU384 MET385 ALA386 THR387 PRO388 ALA389 LYS390 LEU391 ASN392 ARG393 GLN394 ASN395 GLN396 ILE397 ALA398 VAL399 ASP400 GLU401 ILE402 ARG403 GLU404 ARG405 LEU406 PHE407 GLU408 GLN409 VAL410 MET411 ARG412 ILE413 GLY414 LEU415 ASP416 LEU417 PRO418 ALA419 LEU420 ASN421 MET422 GLN423 ARG424 SER425 ARG426 ASP427 HIS428 GLY429 LEU430 PRO431 GLY432 TYR433 ASN434 ALA435 TRP436 ARG437 ARG438 PHE439 CYS440 GLY441 LEU442 PRO443 GLN444 PRO445 GLU446 THR447 VAL448 GLY449 GLN450 LEU451 GLY452 THR453 VAL454 LEU455 ARG456 ASN457 LEU458 LYS459 LEU460 ALA461 ARG462 LYS463 LEU464 MET465 GLU466 GLN467 TYR468 GLY469 THR470 PRO471 ASN472 ASN473 ILE474 ASP475 ILE476 TRP477 MET478 GLY479 GLY480 VAL481 SER482 GLU483 PRO484 LEU485 LYS486 ARG487 LYS488 GLY489 ARG490 VAL491 GLY492 PRO493 LEU494 LEU495 ALA496 CYS497 ILE498 ILE499 GLY500 THR501 GLN502 PHE503 ARG504 LYS505 LEU506 ARG507 ASP508 GLY509 ASP510 ARG511 PHE512 TRP513 TRP514 GLU515 ASN516 GLU517 GLY518 VAL519 PHE520 SER521 MET522 GLN523 GLN524 ARG525 GLN526 ALA527 LEU528 ALA529 GLN530 ILE531 SER532 LEU533 PRO534 ARG535 ILE536 ILE537 CYS538 ASP539 ASN540 THR541 GLY542 ILE543 THR544 THR545 VAL546 SER547 LYS548 ASN549 ASN550 ILE551 PHE552 MET553 SER554 ASN555 SER556 TYR557 PRO558 ARG559 ASP560 PHE561 VAL562 ASN563 CYS564 SER565 THR566 LEU567 PRO568 ALA569 LEU570 ASN571 LEU572 ALA573 SER574 TRP575 ARG576 GLU577 ALA578
Ligands
Unit 5 NAG1 NAG2 BMA3 MAN4 MAN5 FUC6
Unit 6 NAG1 NAG2 BMA3 MAN4 MAN5 FUC6
Unit 7 SCN105 SO4106 SCN107
Unit 8 CA1 SO49 HEM10 ACY15 ACY16 ACY17 NAG620 NAG630
Unit 9 SCN105 SCN106 HEM107
Unit 10 CA2 SO47 ACY12 ACY13 ACY14 NAG620 NAG630
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany