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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE ZYMOGEN FORM OF STREPTOCOCCAL PYROGENIC EXOTOXIN B ACTIVE SITE (C47S) MUTANT
Keywords ZYMOGEN, CYSTEINE PROTEASE, PAPAIN-LIKE, TOXIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1DKI     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYROGENIC EXOTOXIN B ZYMOGEN  A 303 2312 0
2  Protein   PYROGENIC EXOTOXIN B ZYMOGEN  B 320 2426 0
3  Protein   PYROGENIC EXOTOXIN B ZYMOGEN  C 339 2590 0
4  Protein   PYROGENIC EXOTOXIN B ZYMOGEN  D 334 2575 0
5  Ligand   PYROGENIC EXOTOXIN B ZYMOGEN  A 1 0 5
6  Ligand   PYROGENIC EXOTOXIN B ZYMOGEN  B 1 0 5
7  Ligand   PYROGENIC EXOTOXIN B ZYMOGEN  C 1 0 5
8  Ligand   PYROGENIC EXOTOXIN B ZYMOGEN  D 1 0 5
9 Water     639 0 639
total       1939 9903 659
Proteins
Unit 1 PRO2 VAL3 VAL4 LYS5 SER6 LEU7 LEU8 ASP9 SER10 LYS11 GLY12 ILE13 HIS14 TYR15 ASN16 GLN17 GLY18 ASN19 PRO20 TYR21 ASN22 LEU23 LEU24 THR25 PRO26 VAL27 ILE28 GLU29 LYS30 VAL31 LYS32 PRO33 GLY34 GLU35 GLN36 SER37 LEU37P PHE38 ASP38P VAL39 LYS39P GLY40 VAL40P GLN41 ASN41P HIS42 LEU42P ALA43 GLY43P ALA44 GLY44P THR45 GLU45P GLY46 LEU46P SER47 SER47P VAL48 GLY48P ALA49 SER49P THR50 ASN50P ALA51 MET51P THR52 TYR52P ALA53 VAL53P GLN54 TYR54P ILE55 ASN55P MET56 LYS57 TYR58 HIS59 ASN60 GLY60P TYR61 PHE61P PRO62 VAL62P ASN63 ILE63P LYS64 VAL64P GLY65 SER65P LEU66 GLY66P LYS67 ASP67P ASP68 LYS68P TYR69 ARG69P THR70 SER70P TYR71 PRO71P THR72 GLU72P LEU73 ILE73P SER74 LEU74P SER75 GLY75P ASN76 TYR76P ASN77 SER77P PRO78 THR78P TYR79 SER79P PHE80 GLY80P ASN81 SER81P HIS82 PHE82P PRO83 ASP83P LYS84 VAL84P ASN85 ASN85P LEU86 GLY86P PHE87 LYS87P ALA88 GLU88P ALA89 ASN89P ILE90 ILE90P SER91 ALA91P THR92 SER92P ARG93 PHE93P GLN94 MET94P TYR95 GLU95P ASN96 SER96P TRP97 TYR97P ASN98 VAL98P ASN99 GLU99P ILE100 GLN100P LEU101 ILE101P PRO102 LYS102P THR103 GLU103P TYR104 ASN104P SER105 LYS105P GLY106 LYS106P ARG107 LEU107P GLU108 SER109 ASN110 VAL111 GLN112 LYS113 MET114 ALA115 ILE116 SER117 GLU118 LEU119 MET120 ALA121 ASP122 VAL123 GLY124 ILE125 SER126 VAL127 ASP128 MET129 ASP130 TYR131 GLY132 PRO133 SER134 SER135 GLY136 SER137 ALA138 GLY139 SER140 SER141 ARG142 VAL143 GLN144 ARG145 ALA146 LEU147 LYS148 GLU149 ASN150 PHE151 GLY152 TYR153 ASN154 GLN155 SER156 VAL157 HIS158 GLN159 ILE160 ASN161 ARG162 GLY163 ASP164 PHE165 SER166 LYS167 GLN168 ASP169 TRP170 GLU171 ALA172 GLN173 ILE174 ASP175 LYS176 GLU177 LEU178 SER179 GLN180 ASN181 GLN182 PRO183 VAL184 TYR185 TYR186 GLN187 GLY188 VAL189 GLY190 LYS191 VAL192 GLY193 GLY194 HIS195 ALA196 PHE197 VAL198 ILE199 ASP200 GLY201 ALA202 ASP203 GLY204 ARG205 ASN206 PHE207 TYR208 HIS209 VAL210 ASN211 TRP212 GLY213 TRP214 GLY215 GLY216 VAL217 SER218 ASP219 GLY220 PHE221 PHE222 ARG223 LEU224 ASP225 ALA226 LEU227 TYR244 GLN245 SER246 ALA247 VAL248 VAL249 GLY250 ILE251 LYS252 PRO253
Unit 2 GLN1 PRO2 VAL3 VAL4 LYS5 ALA5P SER6 ARG6P LEU7 ASN7P LEU8 GLU8P ASP9 LYS9P SER10 GLU10P LYS11 ALA11P GLY12 LYS12P ILE13 HIS14 TYR15 ASN16 GLN17 GLY18 ASN19 PRO20 TYR21 ASN22 LEU23 LEU24 THR25 PRO26 VAL27 ILE28 GLU29 LYS30 VAL31 LYS32 PRO33 GLY34 GLU35 GLN36 SER37 PHE38 ASP38P VAL39 LYS39P GLY40 VAL40P GLN41 ASN41P HIS42 LEU42P ALA43 GLY43P ALA44 GLY44P THR45 GLU45P GLY46 LEU46P SER47 SER47P VAL48 GLY48P ALA49 SER49P THR50 ASN50P ALA51 MET51P THR52 TYR52P ALA53 VAL53P GLN54 TYR54P ILE55 ASN55P MET56 ILE56P LYS57 SER57P TYR58 THR58P HIS59 GLY59P ASN60 GLY60P TYR61 PHE61P PRO62 VAL62P ASN63 ILE63P LYS64 VAL64P GLY65 SER65P LEU66 GLY66P LYS67 ASP67P ASP68 LYS68P TYR69 ARG69P THR70 SER70P TYR71 PRO71P THR72 GLU72P LEU73 ILE73P SER74 LEU74P SER75 GLY75P ASN76 TYR76P ASN77 SER77P PRO78 THR78P TYR79 SER79P PHE80 GLY80P ASN81 SER81P HIS82 PHE82P PRO83 ASP83P LYS84 VAL84P ASN85 ASN85P LEU86 GLY86P PHE87 LYS87P ALA88 GLU88P ALA89 ASN89P ILE90 ILE90P SER91 ALA91P THR92 SER92P ARG93 PHE93P GLN94 MET94P TYR95 GLU95P ASN96 SER96P TRP97 TYR97P ASN98 VAL98P ASN99 GLU99P ILE100 GLN100P LEU101 ILE101P PRO102 LYS102P THR103 GLU103P TYR104 ASN104P SER105 LYS105P GLY106 LYS106P ARG107 LEU107P GLU108 SER109 ASN110 VAL111 GLN112 LYS113 MET114 ALA115 ILE116 SER117 GLU118 LEU119 MET120 ALA121 ASP122 VAL123 GLY124 ILE125 SER126 VAL127 ASP128 MET129 ASP130 TYR131 GLY132 PRO133 SER134 SER135 GLY136 SER137 ALA138 GLY139 SER140 SER141 ARG142 VAL143 GLN144 ARG145 ALA146 LEU147 LYS148 GLU149 ASN150 PHE151 GLY152 TYR153 ASN154 GLN155 SER156 VAL157 HIS158 GLN159 ILE160 ASN161 ARG162 GLY163 ASP164 PHE165 SER166 LYS167 GLN168 ASP169 TRP170 GLU171 ALA172 GLN173 ILE174 ASP175 LYS176 GLU177 LEU178 SER179 GLN180 ASN181 GLN182 PRO183 VAL184 TYR185 TYR186 GLN187 GLY188 VAL189 GLY190 LYS191 VAL192 GLY193 GLY194 HIS195 ALA196 PHE197 VAL198 ILE199 ASP200 GLY201 ALA202 ASP203 GLY204 ARG205 ASN206 PHE207 TYR208 HIS209 VAL210 ASN211 TRP212 GLY213 TRP214 GLY215 GLY216 VAL217 SER218 ASP219 GLY220 PHE221 PHE222 ARG223 LEU224 ASP225 ALA226 LEU227 ASN228 PRO229 PHE241 ASN242 GLY243 TYR244 GLN245 SER246 ALA247 VAL248 VAL249 GLY250 ILE251 LYS252 PRO253
Unit 3 GLN1 PRO2 VAL3 VAL4 PHE4P LYS5 ALA5P SER6 ARG6P LEU7 ASN7P LEU8 GLU8P ASP9 LYS9P SER10 GLU10P LYS11 ALA11P GLY12 LYS12P ILE13 ASP13P HIS14 SER14P TYR15 ALA15P ASN16 ILE16P GLN17 THR17P GLY18 PHE18P ASN19 ILE19P PRO20 GLN20P TYR21 LYS21P ASN22 LEU23 LEU24 THR25 PRO26 VAL27 ILE28 GLU29 LYS30 VAL31 LYS32 PRO33 GLY34 GLU35 ILE35P GLN36 LYS36P SER37 LEU37P PHE38 ASP38P VAL39 LYS39P GLY40 VAL40P GLN41 ASN41P HIS42 LEU42P ALA43 GLY43P ALA44 GLY44P THR45 GLU45P GLY46 LEU46P SER47 SER47P VAL48 GLY48P ALA49 SER49P THR50 ASN50P ALA51 MET51P THR52 TYR52P ALA53 VAL53P GLN54 TYR54P ILE55 ASN55P MET56 ILE56P LYS57 SER57P TYR58 THR58P HIS59 GLY59P ASN60 GLY60P TYR61 PHE61P PRO62 VAL62P ASN63 ILE63P LYS64 VAL64P GLY65 SER65P LEU66 GLY66P LYS67 ASP67P ASP68 LYS68P TYR69 ARG69P THR70 SER70P TYR71 PRO71P THR72 GLU72P LEU73 ILE73P SER74 LEU74P SER75 GLY75P ASN76 TYR76P ASN77 SER77P PRO78 THR78P TYR79 SER79P PHE80 GLY80P ASN81 SER81P HIS82 PHE82P PRO83 ASP83P LYS84 VAL84P ASN85 ASN85P LEU86 GLY86P PHE87 LYS87P ALA88 GLU88P ALA89 ASN89P ILE90 ILE90P SER91 ALA91P THR92 SER92P ARG93 PHE93P GLN94 MET94P TYR95 GLU95P ASN96 SER96P TRP97 TYR97P ASN98 VAL98P ASN99 GLU99P ILE100 GLN100P LEU101 ILE101P PRO102 LYS102P THR103 GLU103P TYR104 ASN104P SER105 LYS105P GLY106 LYS106P ARG107 LEU107P GLU108 ASP108P SER109 SER109P ASN110 THR110P VAL111 TYR111P GLN112 ALA112P LYS113 MET114 ALA115 ILE116 SER117 GLU118 LEU119 MET120 ALA121 ASP122 VAL123 GLY124 ILE125 SER126 VAL127 ASP128 MET129 ASP130 TYR131 GLY132 PRO133 SER134 SER135 GLY136 SER137 ALA138 GLY139 SER140 SER141 ARG142 VAL143 GLN144 ARG145 ALA146 LEU147 LYS148 GLU149 ASN150 PHE151 GLY152 TYR153 ASN154 GLN155 SER156 VAL157 HIS158 GLN159 ILE160 ASN161 ARG162 GLY163 ASP164 PHE165 SER166 LYS167 GLN168 ASP169 TRP170 GLU171 ALA172 GLN173 ILE174 ASP175 LYS176 GLU177 LEU178 SER179 GLN180 ASN181 GLN182 PRO183 VAL184 TYR185 TYR186 GLN187 GLY188 VAL189 GLY190 LYS191 VAL192 GLY193 GLY194 HIS195 ALA196 PHE197 VAL198 ILE199 ASP200 GLY201 ALA202 ASP203 GLY204 ARG205 ASN206 PHE207 TYR208 HIS209 VAL210 ASN211 TRP212 GLY213 TRP214 GLY215 GLY216 VAL217 SER218 ASP219 GLY220 PHE221 PHE222 ARG223 LEU224 ASP225 ALA226 LEU227 ASN228 PRO229 GLY240 PHE241 ASN242 GLY243 TYR244 GLN245 SER246 ALA247 VAL248 VAL249 GLY250 ILE251 LYS252 PRO253
Unit 4 GLN1 PRO2 VAL3 VAL4 PHE4P LYS5 ALA5P SER6 ARG6P LEU7 ASN7P LEU8 GLU8P ASP9 LYS9P SER10 GLU10P LYS11 ALA11P GLY12 LYS12P ILE13 ASP13P HIS14 SER14P TYR15 ALA15P ASN16 ILE16P GLN17 THR17P GLY18 PHE18P ASN19 ILE19P PRO20 GLN20P TYR21 LYS21P ASN22 LEU23 LEU24 THR25 PRO26 VAL27 ILE28 GLU29 LYS30 VAL31 LYS32 PRO33 GLY34 GLU35 GLN36 SER37 LEU37P PHE38 ASP38P VAL39 LYS39P GLY40 VAL40P GLN41 ASN41P HIS42 LEU42P ALA43 GLY43P ALA44 GLY44P THR45 GLU45P GLY46 LEU46P SER47 SER47P VAL48 GLY48P ALA49 SER49P THR50 ASN50P ALA51 MET51P THR52 TYR52P ALA53 VAL53P GLN54 TYR54P ILE55 ASN55P MET56 ILE56P LYS57 SER57P TYR58 THR58P HIS59 GLY59P ASN60 GLY60P TYR61 PHE61P PRO62 VAL62P ASN63 ILE63P LYS64 VAL64P GLY65 SER65P LEU66 GLY66P LYS67 ASP67P ASP68 LYS68P TYR69 ARG69P THR70 SER70P TYR71 PRO71P THR72 GLU72P LEU73 ILE73P SER74 LEU74P SER75 GLY75P ASN76 TYR76P ASN77 SER77P PRO78 THR78P TYR79 SER79P PHE80 GLY80P ASN81 SER81P HIS82 PHE82P PRO83 ASP83P LYS84 VAL84P ASN85 ASN85P LEU86 GLY86P PHE87 LYS87P ALA88 GLU88P ALA89 ASN89P ILE90 ILE90P SER91 ALA91P THR92 SER92P ARG93 PHE93P GLN94 MET94P TYR95 GLU95P ASN96 SER96P TRP97 TYR97P ASN98 VAL98P ASN99 GLU99P ILE100 GLN100P LEU101 ILE101P PRO102 LYS102P THR103 GLU103P TYR104 ASN104P SER105 LYS105P GLY106 LYS106P ARG107 LEU107P GLU108 ASP108P SER109 SER109P ASN110 THR110P VAL111 TYR111P GLN112 ALA112P LYS113 GLY113P MET114 ALA115 ILE116 SER117 GLU118 LEU119 MET120 ALA121 ASP122 VAL123 GLY124 ILE125 SER126 VAL127 ASP128 MET129 ASP130 TYR131 GLY132 PRO133 SER134 SER135 GLY136 SER137 ALA138 GLY139 SER140 SER141 ARG142 VAL143 GLN144 ARG145 ALA146 LEU147 LYS148 GLU149 ASN150 PHE151 GLY152 TYR153 ASN154 GLN155 SER156 VAL157 HIS158 GLN159 ILE160 ASN161 ARG162 GLY163 ASP164 PHE165 SER166 LYS167 GLN168 ASP169 TRP170 GLU171 ALA172 GLN173 ILE174 ASP175 LYS176 GLU177 LEU178 SER179 GLN180 ASN181 GLN182 PRO183 VAL184 TYR185 TYR186 GLN187 GLY188 VAL189 GLY190 LYS191 VAL192 GLY193 GLY194 HIS195 ALA196 PHE197 VAL198 ILE199 ASP200 GLY201 ALA202 ASP203 GLY204 ARG205 ASN206 PHE207 TYR208 HIS209 VAL210 ASN211 TRP212 GLY213 TRP214 GLY215 GLY216 VAL217 SER218 ASP219 GLY220 PHE221 PHE222 ARG223 LEU224 ASP225 ALA226 LEU227 ASN228 PRO229 TYR244 GLN245 SER246 ALA247 VAL248 VAL249 GLY250 ILE251 LYS252 PRO253
Ligands
Unit 5 SO41001
Unit 6 SO41002
Unit 7 SO41003
Unit 8 SO41004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany