|
[Image Library Home] | [Image Library Entry] |
| Title | STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT W TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROP W3A1) | |
| Keywords | IRON-SULFUR FLAVOPROTEIN, ELECTRON TRANSFER, OXIDOREDUCTASE | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 1DJN | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | TRIMETHYLAMINE DEHYDROGENASE | A | 729 | 5741 | 0 |
| 2 | Protein | TRIMETHYLAMINE DEHYDROGENASE | B | 729 | 5741 | 0 |
| 3 | Ligand | TRIMETHYLAMINE DEHYDROGENASE | A | 3 | 0 | 66 |
| 4 | Ligand | TRIMETHYLAMINE DEHYDROGENASE | B | 3 | 0 | 66 |
| 5 | Water | 653 | 0 | 653 | ||
| total | 2117 | 11482 | 785 |
| Unit 1 | ALA1 ARG2 ASP3 PRO4 LYS5 HIS6 ASP7 ILE8 LEU9 PHE10 GLU11 PRO12 ILE13 GLN14 ILE15 GLY16 PRO17 LYS18 THR19 LEU20 ARG21 ASN22 ARG23 PHE24 TYR25 GLN26 VAL27 PRO28 HIS29 CYS30 ILE31 GLY32 ALA33 GLY34 SER35 ASP36 LYS37 PRO38 GLY39 PHE40 GLN41 SER42 ALA43 HIS44 ARG45 SER46 VAL47 LYS48 ALA49 GLU50 GLY51 GLY52 TRP53 ALA54 ALA55 LEU56 ASN57 THR58 GLU59 TYR60 CYS61 SER62 ILE63 ASN64 PRO65 GLU66 SER67 ASP68 ASP69 THR70 HIS71 ARG72 LEU73 SER74 ALA75 ARG76 ILE77 TRP78 ASP79 GLU80 GLY81 ASP82 VAL83 ARG84 ASN85 LEU86 LYS87 ALA88 MET89 THR90 ASP91 GLU92 VAL93 HIS94 LYS95 TYR96 GLY97 ALA98 LEU99 ALA100 GLY101 VAL102 GLU103 LEU104 TRP105 TYR106 GLY107 GLY108 ALA109 HIS110 ALA111 PRO112 ASN113 MET114 GLU115 SER116 ARG117 ALA118 THR119 PRO120 ARG121 GLY122 PRO123 SER124 GLN125 TYR126 ALA127 SER128 GLU129 PHE130 GLU131 THR132 LEU133 SER134 TYR135 CYS136 LYS137 GLU138 MET139 ASP140 LEU141 SER142 ASP143 ILE144 ALA145 GLN146 VAL147 GLN148 GLN149 PHE150 TYR151 VAL152 ASP153 ALA154 ALA155 LYS156 ARG157 SER158 ARG159 ASP160 ALA161 GLY162 PHE163 ASP164 ILE165 VAL166 TYR167 VAL168 TYR169 GLY170 ALA171 HIS172 SER173 TYR174 LEU175 PRO176 LEU177 GLN178 PHE179 LEU180 ASN181 PRO182 TYR183 TYR184 ASN185 LYS186 ARG187 THR188 ASP189 LYS190 TYR191 GLY192 GLY193 SER194 LEU195 GLU196 ASN197 ARG198 ALA199 ARG200 PHE201 TRP202 LEU203 GLU204 THR205 LEU206 GLU207 LYS208 VAL209 LYS210 HIS211 ALA212 VAL213 GLY214 SER215 ASP216 CYS217 ALA218 ILE219 ALA220 THR221 ARG222 PHE223 GLY224 VAL225 ASP226 THR227 VAL228 TYR229 GLY230 PRO231 GLY232 GLN233 ILE234 GLU235 ALA236 GLU237 VAL238 ASP239 GLY240 GLN241 LYS242 PHE243 VAL244 GLU245 MET246 ALA247 ASP248 SER249 LEU250 VAL251 ASP252 MET253 TRP254 ASP255 ILE256 THR257 ILE258 GLY259 ASP260 ILE261 ALA262 GLU263 TRP264 GLY265 GLU266 ASP267 ALA268 GLY269 PRO270 SER271 ARG272 PHE273 TYR274 GLN275 GLN276 GLY277 HIS278 THR279 ILE280 PRO281 TRP282 VAL283 LYS284 LEU285 VAL286 LYS287 GLN288 VAL289 SER290 LYS291 LYS292 PRO293 VAL294 LEU295 GLY296 VAL297 GLY298 ARG299 TYR300 THR301 ASP302 PRO303 GLU304 LYS305 MET306 ILE307 GLU308 ILE309 VAL310 THR311 LYS312 GLY313 TYR314 ALA315 ASP316 ILE317 ILE318 GLY319 CYS320 ALA321 ARG322 PRO323 SER324 ILE325 ALA326 ASP327 PRO328 PHE329 LEU330 PRO331 GLN332 LYS333 VAL334 GLU335 GLN336 GLY337 ARG338 TYR339 ASP340 ASP341 ILE342 ARG343 VAL344 CYS345 ILE346 GLY347 CYS348 ASN349 VAL350 CYS351 ILE352 SER353 ARG354 TRP355 GLU356 ILE357 GLY358 GLY359 PRO360 PRO361 MET362 ILE363 CYS364 THR365 GLN366 ASN367 ALA368 THR369 ALA370 GLY371 GLU372 GLU373 TYR374 ARG375 ARG376 GLY377 TRP378 HIS379 PRO380 GLU381 LYS382 PHE383 ARG384 GLN385 THR386 LYS387 ASN388 LYS389 ASP390 SER391 VAL392 LEU393 ILE394 VAL395 GLY396 ALA397 GLY398 PRO399 SER400 GLY401 SER402 GLU403 ALA404 ALA405 ARG406 VAL407 LEU408 MET409 GLU410 SER411 GLY412 TYR413 THR414 VAL415 HIS416 LEU417 THR418 ASP419 THR420 ALA421 GLU422 LYS423 ILE424 GLY425 GLY426 HIS427 LEU428 ASN429 GLN430 VAL431 ALA432 ALA433 LEU434 PRO435 GLY436 LEU437 GLY438 GLU439 TRP440 SER441 TYR442 HIS443 ARG444 ASP445 TYR446 ARG447 GLU448 THR449 GLN450 ILE451 THR452 LYS453 LEU454 LEU455 LYS456 LYS457 ASN458 LYS459 GLU460 SER461 GLN462 LEU463 ALA464 LEU465 GLY466 GLN467 LYS468 PRO469 MET470 THR471 ALA472 ASP473 ASP474 VAL475 LEU476 GLN477 TYR478 GLY479 ALA480 ASP481 LYS482 VAL483 ILE484 ILE485 ALA486 THR487 GLY488 ALA489 ARG490 TRP491 ASN492 THR493 ASP494 GLY495 THR496 ASN497 CYS498 LEU499 THR500 HIS501 ASP502 PRO503 ILE504 PRO505 GLY506 ALA507 ASP508 ALA509 SER510 LEU511 PRO512 ASP513 GLN514 LEU515 THR516 PRO517 GLU518 GLN519 VAL520 MET521 ASP522 GLY523 LYS524 LYS525 LYS526 ILE527 GLY528 LYS529 ARG530 VAL531 VAL532 ILE533 LEU534 ASN535 ALA536 ASP537 THR538 TYR539 PHE540 MET541 ALA542 PRO543 SER544 LEU545 ALA546 GLU547 LYS548 LEU549 ALA550 THR551 ALA552 GLY553 HIS554 GLU555 VAL556 THR557 ILE558 VAL559 SER560 GLY561 VAL562 HIS563 LEU564 ALA565 ASN566 TYR567 MET568 HIS569 PHE570 THR571 LEU572 GLU573 TYR574 PRO575 ASN576 MET577 MET578 ARG579 ARG580 LEU581 HIS582 GLU583 LEU584 HIS585 VAL586 GLU587 GLU588 LEU589 GLY590 ASP591 HIS592 PHE593 CYS594 SER595 ARG596 ILE597 GLU598 PRO599 GLY600 ARG601 MET602 GLU603 ILE604 TYR605 ASN606 ILE607 TRP608 GLY609 ASP610 GLY611 SER612 LYS613 ARG614 THR615 TYR616 ARG617 GLY618 PRO619 GLY620 VAL621 SER622 PRO623 ARG624 ASP625 ALA626 ASN627 THR628 SER629 HIS630 ARG631 TRP632 ILE633 GLU634 PHE635 ASP636 SER637 LEU638 VAL639 LEU640 VAL641 THR642 GLY643 ARG644 HIS645 SER646 GLU647 CYS648 THR649 LEU650 TRP651 ASN652 GLU653 LEU654 LYS655 ALA656 ARG657 GLU658 SER659 GLU660 TRP661 ALA662 GLU663 ASN664 ASP665 ILE666 LYS667 GLY668 ILE669 TYR670 LEU671 ILE672 GLY673 ASP674 ALA675 GLU676 ALA677 PRO678 ARG679 LEU680 ILE681 ALA682 ASP683 ALA684 THR685 PHE686 THR687 GLY688 HIS689 ARG690 VAL691 ALA692 ARG693 GLU694 ILE695 GLU696 GLU697 ALA698 ASN699 PRO700 GLN701 ILE702 ALA703 ILE704 PRO705 TYR706 LYS707 ARG708 GLU709 THR710 ILE711 ALA712 TRP713 GLY714 THR715 PRO716 HIS717 MET718 PRO719 GLY720 GLY721 ASN722 PHE723 LYS724 ILE725 GLU726 TYR727 LYS728 VAL729 |
| Unit 2 | ALA1 ARG2 ASP3 PRO4 LYS5 HIS6 ASP7 ILE8 LEU9 PHE10 GLU11 PRO12 ILE13 GLN14 ILE15 GLY16 PRO17 LYS18 THR19 LEU20 ARG21 ASN22 ARG23 PHE24 TYR25 GLN26 VAL27 PRO28 HIS29 CYS30 ILE31 GLY32 ALA33 GLY34 SER35 ASP36 LYS37 PRO38 GLY39 PHE40 GLN41 SER42 ALA43 HIS44 ARG45 SER46 VAL47 LYS48 ALA49 GLU50 GLY51 GLY52 TRP53 ALA54 ALA55 LEU56 ASN57 THR58 GLU59 TYR60 CYS61 SER62 ILE63 ASN64 PRO65 GLU66 SER67 ASP68 ASP69 THR70 HIS71 ARG72 LEU73 SER74 ALA75 ARG76 ILE77 TRP78 ASP79 GLU80 GLY81 ASP82 VAL83 ARG84 ASN85 LEU86 LYS87 ALA88 MET89 THR90 ASP91 GLU92 VAL93 HIS94 LYS95 TYR96 GLY97 ALA98 LEU99 ALA100 GLY101 VAL102 GLU103 LEU104 TRP105 TYR106 GLY107 GLY108 ALA109 HIS110 ALA111 PRO112 ASN113 MET114 GLU115 SER116 ARG117 ALA118 THR119 PRO120 ARG121 GLY122 PRO123 SER124 GLN125 TYR126 ALA127 SER128 GLU129 PHE130 GLU131 THR132 LEU133 SER134 TYR135 CYS136 LYS137 GLU138 MET139 ASP140 LEU141 SER142 ASP143 ILE144 ALA145 GLN146 VAL147 GLN148 GLN149 PHE150 TYR151 VAL152 ASP153 ALA154 ALA155 LYS156 ARG157 SER158 ARG159 ASP160 ALA161 GLY162 PHE163 ASP164 ILE165 VAL166 TYR167 VAL168 TYR169 GLY170 ALA171 HIS172 SER173 TYR174 LEU175 PRO176 LEU177 GLN178 PHE179 LEU180 ASN181 PRO182 TYR183 TYR184 ASN185 LYS186 ARG187 THR188 ASP189 LYS190 TYR191 GLY192 GLY193 SER194 LEU195 GLU196 ASN197 ARG198 ALA199 ARG200 PHE201 TRP202 LEU203 GLU204 THR205 LEU206 GLU207 LYS208 VAL209 LYS210 HIS211 ALA212 VAL213 GLY214 SER215 ASP216 CYS217 ALA218 ILE219 ALA220 THR221 ARG222 PHE223 GLY224 VAL225 ASP226 THR227 VAL228 TYR229 GLY230 PRO231 GLY232 GLN233 ILE234 GLU235 ALA236 GLU237 VAL238 ASP239 GLY240 GLN241 LYS242 PHE243 VAL244 GLU245 MET246 ALA247 ASP248 SER249 LEU250 VAL251 ASP252 MET253 TRP254 ASP255 ILE256 THR257 ILE258 GLY259 ASP260 ILE261 ALA262 GLU263 TRP264 GLY265 GLU266 ASP267 ALA268 GLY269 PRO270 SER271 ARG272 PHE273 TYR274 GLN275 GLN276 GLY277 HIS278 THR279 ILE280 PRO281 TRP282 VAL283 LYS284 LEU285 VAL286 LYS287 GLN288 VAL289 SER290 LYS291 LYS292 PRO293 VAL294 LEU295 GLY296 VAL297 GLY298 ARG299 TYR300 THR301 ASP302 PRO303 GLU304 LYS305 MET306 ILE307 GLU308 ILE309 VAL310 THR311 LYS312 GLY313 TYR314 ALA315 ASP316 ILE317 ILE318 GLY319 CYS320 ALA321 ARG322 PRO323 SER324 ILE325 ALA326 ASP327 PRO328 PHE329 LEU330 PRO331 GLN332 LYS333 VAL334 GLU335 GLN336 GLY337 ARG338 TYR339 ASP340 ASP341 ILE342 ARG343 VAL344 CYS345 ILE346 GLY347 CYS348 ASN349 VAL350 CYS351 ILE352 SER353 ARG354 TRP355 GLU356 ILE357 GLY358 GLY359 PRO360 PRO361 MET362 ILE363 CYS364 THR365 GLN366 ASN367 ALA368 THR369 ALA370 GLY371 GLU372 GLU373 TYR374 ARG375 ARG376 GLY377 TRP378 HIS379 PRO380 GLU381 LYS382 PHE383 ARG384 GLN385 THR386 LYS387 ASN388 LYS389 ASP390 SER391 VAL392 LEU393 ILE394 VAL395 GLY396 ALA397 GLY398 PRO399 SER400 GLY401 SER402 GLU403 ALA404 ALA405 ARG406 VAL407 LEU408 MET409 GLU410 SER411 GLY412 TYR413 THR414 VAL415 HIS416 LEU417 THR418 ASP419 THR420 ALA421 GLU422 LYS423 ILE424 GLY425 GLY426 HIS427 LEU428 ASN429 GLN430 VAL431 ALA432 ALA433 LEU434 PRO435 GLY436 LEU437 GLY438 GLU439 TRP440 SER441 TYR442 HIS443 ARG444 ASP445 TYR446 ARG447 GLU448 THR449 GLN450 ILE451 THR452 LYS453 LEU454 LEU455 LYS456 LYS457 ASN458 LYS459 GLU460 SER461 GLN462 LEU463 ALA464 LEU465 GLY466 GLN467 LYS468 PRO469 MET470 THR471 ALA472 ASP473 ASP474 VAL475 LEU476 GLN477 TYR478 GLY479 ALA480 ASP481 LYS482 VAL483 ILE484 ILE485 ALA486 THR487 GLY488 ALA489 ARG490 TRP491 ASN492 THR493 ASP494 GLY495 THR496 ASN497 CYS498 LEU499 THR500 HIS501 ASP502 PRO503 ILE504 PRO505 GLY506 ALA507 ASP508 ALA509 SER510 LEU511 PRO512 ASP513 GLN514 LEU515 THR516 PRO517 GLU518 GLN519 VAL520 MET521 ASP522 GLY523 LYS524 LYS525 LYS526 ILE527 GLY528 LYS529 ARG530 VAL531 VAL532 ILE533 LEU534 ASN535 ALA536 ASP537 THR538 TYR539 PHE540 MET541 ALA542 PRO543 SER544 LEU545 ALA546 GLU547 LYS548 LEU549 ALA550 THR551 ALA552 GLY553 HIS554 GLU555 VAL556 THR557 ILE558 VAL559 SER560 GLY561 VAL562 HIS563 LEU564 ALA565 ASN566 TYR567 MET568 HIS569 PHE570 THR571 LEU572 GLU573 TYR574 PRO575 ASN576 MET577 MET578 ARG579 ARG580 LEU581 HIS582 GLU583 LEU584 HIS585 VAL586 GLU587 GLU588 LEU589 GLY590 ASP591 HIS592 PHE593 CYS594 SER595 ARG596 ILE597 GLU598 PRO599 GLY600 ARG601 MET602 GLU603 ILE604 TYR605 ASN606 ILE607 TRP608 GLY609 ASP610 GLY611 SER612 LYS613 ARG614 THR615 TYR616 ARG617 GLY618 PRO619 GLY620 VAL621 SER622 PRO623 ARG624 ASP625 ALA626 ASN627 THR628 SER629 HIS630 ARG631 TRP632 ILE633 GLU634 PHE635 ASP636 SER637 LEU638 VAL639 LEU640 VAL641 THR642 GLY643 ARG644 HIS645 SER646 GLU647 CYS648 THR649 LEU650 TRP651 ASN652 GLU653 LEU654 LYS655 ALA656 ARG657 GLU658 SER659 GLU660 TRP661 ALA662 GLU663 ASN664 ASP665 ILE666 LYS667 GLY668 ILE669 TYR670 LEU671 ILE672 GLY673 ASP674 ALA675 GLU676 ALA677 PRO678 ARG679 LEU680 ILE681 ALA682 ASP683 ALA684 THR685 PHE686 THR687 GLY688 HIS689 ARG690 VAL691 ALA692 ARG693 GLU694 ILE695 GLU696 GLU697 ALA698 ASN699 PRO700 GLN701 ILE702 ALA703 ILE704 PRO705 TYR706 LYS707 ARG708 GLU709 THR710 ILE711 ALA712 TRP713 GLY714 THR715 PRO716 HIS717 MET718 PRO719 GLY720 GLY721 ASN722 PHE723 LYS724 ILE725 GLU726 TYR727 LYS728 VAL729 |
| Unit 3 | SF4801 FMN802 ADP803 |
| Unit 4 | SF41801 FMN1802 ADP1803 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |