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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RAB GERANYLGERANYLTRANSFERASE FROM RAT BRAIN
Keywords CRYSTAL STRUCTURE, RAB GERANYLGERANYLTRANSFERASE, 2.0 A RESOLUTION, N-FORMYLMETHIONINE, ALPHA SUBUNIT, BETA SUBUNIT
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1DCE     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT)  A 567 4484 10
2  Protein   PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT)  B 329 2574 0
3  Protein   PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT)  C 567 4499 10
4  Protein   PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT)  D 329 2574 0
5  Ligand   PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT)  B 1 0 1
6  Ligand   PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT)  D 1 0 1
7 Water     829 0 829
total       2623 14131 851

Proteins
Unit 1 FME1 HIS2 GLY3 ARG4 LEU5 LYS6 VAL7 LYS8 THR9 SER10 GLU11 GLU12 GLN13 ALA14 GLU15 ALA16 LYS17 ARG18 LEU19 GLU20 ARG21 GLU22 GLN23 LYS24 LEU25 LYS26 LEU27 TYR28 GLN29 SER30 ALA31 THR32 GLN33 ALA34 VAL35 PHE36 GLN37 LYS38 ARG39 GLN40 ALA41 GLY42 GLU43 LEU44 ASP45 GLU46 SER47 VAL48 LEU49 GLU50 LEU51 THR52 SER53 GLN54 ILE55 LEU56 GLY57 ALA58 ASN59 PRO60 ASP61 PHE62 ALA63 THR64 LEU65 TRP66 ASN67 CYS68 ARG69 ARG70 GLU71 VAL72 LEU73 GLN74 HIS75 LEU76 GLU77 THR78 GLU79 LYS80 SER81 PRO82 GLU83 GLU84 SER85 ALA86 ALA87 LEU88 VAL89 LYS90 ALA91 GLU92 LEU93 GLY94 PHE95 LEU96 GLU97 SER98 CYS99 LEU100 ARG101 VAL102 ASN103 PRO104 LYS105 SER106 TYR107 GLY108 THR109 TRP110 HIS111 HIS112 ARG113 CYS114 TRP115 LEU116 LEU117 SER118 ARG119 LEU120 PRO121 GLU122 PRO123 ASN124 TRP125 ALA126 ARG127 GLU128 LEU129 GLU130 LEU131 CYS132 ALA133 ARG134 PHE135 LEU136 GLU137 ALA138 ASP139 GLU140 ARG141 ASN142 PHE143 HIS144 CYS145 TRP146 ASP147 TYR148 ARG149 ARG150 PHE151 VAL152 ALA153 ALA154 GLN155 ALA156 ALA157 VAL158 ALA159 PRO160 ALA161 GLU162 GLU163 LEU164 ALA165 PHE166 THR167 ASP168 SER169 LEU170 ILE171 THR172 ARG173 ASN174 PHE175 SER176 ASN177 TYR178 SER179 SER180 TRP181 HIS182 TYR183 ARG184 SER185 CYS186 LEU187 LEU188 PRO189 GLN190 LEU191 HIS192 PRO193 GLN194 PRO195 ASP196 SER197 GLY198 PRO199 GLN200 GLY201 ARG202 LEU203 PRO204 GLU205 ASN206 VAL207 LEU208 LEU209 LYS210 GLU211 LEU212 GLU213 LEU214 VAL215 GLN216 ASN217 ALA218 PHE219 PHE220 THR221 ASP222 PRO223 ASN224 ASP225 GLN226 SER227 ALA228 TRP229 PHE230 TYR231 HIS232 ARG233 TRP234 LEU235 LEU236 GLY237 ARG238 ALA239 GLU240 PRO241 HIS242 ASP243 VAL244 LEU245 CYS246 CYS247 VAL248 HIS249 VAL250 SER251 ARG252 GLU253 GLU254 ALA255 CYS256 LEU257 SER258 VAL259 CYS260 PHE261 SER262 ARG263 PRO264 LEU265 THR266 VAL267 GLY268 SER269 ARG270 MET271 GLY272 THR273 LEU274 LEU275 LEU276 MET277 VAL278 ASP279 GLU280 ALA281 PRO282 LEU283 SER284 VAL285 GLU286 TRP287 ARG288 THR289 PRO290 ASP291 GLY292 ARG293 ASN294 ARG295 PRO296 SER297 HIS298 VAL299 TRP300 LEU301 CYS302 ASP303 LEU304 PRO305 ALA306 ALA307 SER308 LEU309 ASN310 ASP311 GLN312 LEU313 PRO314 GLN315 HIS316 THR317 PHE318 ARG319 VAL320 ILE321 TRP322 THR323 GLY324 SER325 ASP326 SER327 GLN328 LYS329 GLU330 CYS331 VAL332 LEU333 LEU334 LYS335 ASP336 ARG337 PRO338 GLU339 CYS340 TRP341 CYS342 ARG343 ASP344 SER345 ALA346 THR347 ASP348 GLU349 GLN350 LEU351 PHE352 ARG353 CYS354 GLU355 LEU356 SER357 VAL358 GLU359 LYS360 SER361 THR362 VAL363 LEU364 GLN365 SER366 GLU367 LEU368 GLU369 SER370 CYS371 LYS372 GLU373 LEU374 GLN375 GLU376 LEU377 GLU378 PRO379 GLU380 ASN381 LYS382 TRP383 CYS384 LEU385 LEU386 THR387 ILE388 ILE389 LEU390 LEU391 MET392 ARG393 ALA394 LEU395 ASP396 PRO397 LEU398 LEU399 TYR400 GLU401 LYS402 GLU403 THR404 LEU405 GLN406 TYR407 PHE408 SER409 THR410 LEU411 LYS412 ALA413 VAL414 ASP415 PRO416 MET417 ARG418 ALA419 ALA420 TYR421 LEU422 ASP423 ASP424 LEU425 ARG426 SER427 LYS428 PHE429 LEU430 LEU431 GLU432 ASN433 SER434 VAL435 LEU436 LYS437 MET438 GLU439 TYR440 ALA441 ASP442 VAL443 ARG444 VAL445 LEU446 HIS447 LEU448 ALA449 HIS450 LYS451 ASP452 LEU453 THR454 VAL455 LEU456 CYS457 HIS458 LEU459 GLU460 GLN461 LEU462 LEU463 LEU464 VAL465 THR466 HIS467 LEU468 ASP469 LEU470 SER471 HIS472 ASN473 ARG474 LEU475 ARG476 ALA477 LEU478 PRO479 PRO480 ALA481 LEU482 ALA483 ALA484 LEU485 ARG486 CYS487 LEU488 GLU489 VAL490 LEU491 GLN492 ALA493 SER494 ASP495 ASN496 ALA497 LEU498 GLU499 ASN500 VAL501 ASP502 GLY503 VAL504 ALA505 ASN506 LEU507 PRO508 ARG509 LEU510 GLN511 GLU512 LEU513 LEU514 LEU515 CYS516 ASN517 ASN518 ARG519 LEU520 GLN521 GLN522 SER523 ALA524 ALA525 ILE526 GLN527 PRO528 LEU529 VAL530 SER531 CYS532 PRO533 ARG534 LEU535 VAL536 LEU537 LEU538 ASN539 LEU540 GLN541 GLY542 ASN543 SER544 LEU545 CYS546 GLN547 GLU548 GLU549 GLY550 ILE551 GLN552 GLU553 ARG554 LEU555 ALA556 GLU557 MET558 LEU559 PRO560 SER561 VAL562 SER563 SER564 ILE565 LEU566 THR567
Unit 2 THR3 GLN4 GLN5 LYS6 ASP7 VAL8 THR9 ILE10 LYS11 SER12 ASP13 ALA14 PRO15 ASP16 THR17 LEU18 LEU19 LEU20 GLU21 LYS22 HIS23 ALA24 ASP25 TYR26 ILE27 ALA28 SER29 TYR30 GLY31 SER32 LYS33 LYS34 ASP35 ASP36 TYR37 GLU38 TYR39 CYS40 MET41 SER42 GLU43 TYR44 LEU45 ARG46 MET47 SER48 GLY49 VAL50 TYR51 TRP52 GLY53 LEU54 THR55 VAL56 MET57 ASP58 LEU59 MET60 GLY61 GLN62 LEU63 HIS64 ARG65 MET66 ASN67 LYS68 GLU69 GLU70 ILE71 LEU72 VAL73 PHE74 ILE75 LYS76 SER77 CYS78 GLN79 HIS80 GLU81 CYS82 GLY83 GLY84 VAL85 SER86 ALA87 SER88 ILE89 GLY90 HIS91 ASP92 PRO93 HIS94 LEU95 LEU96 TYR97 THR98 LEU99 SER100 ALA101 VAL102 GLN103 ILE104 LEU105 THR106 LEU107 TYR108 ASP109 SER110 ILE111 HIS112 VAL113 ILE114 ASN115 VAL116 ASP117 LYS118 VAL119 VAL120 ALA121 TYR122 VAL123 GLN124 SER125 LEU126 GLN127 LYS128 GLU129 ASP130 GLY131 SER132 PHE133 ALA134 GLY135 ASP136 ILE137 TRP138 GLY139 GLU140 ILE141 ASP142 THR143 ARG144 PHE145 SER146 PHE147 CYS148 ALA149 VAL150 ALA151 THR152 LEU153 ALA154 LEU155 LEU156 GLY157 LYS158 LEU159 ASP160 ALA161 ILE162 ASN163 VAL164 GLU165 LYS166 ALA167 ILE168 GLU169 PHE170 VAL171 LEU172 SER173 CYS174 MET175 ASN176 PHE177 ASP178 GLY179 GLY180 PHE181 GLY182 CYS183 ARG184 PRO185 GLY186 SER187 GLU188 SER189 HIS190 ALA191 GLY192 GLN193 ILE194 TYR195 CYS196 CYS197 THR198 GLY199 PHE200 LEU201 ALA202 ILE203 THR204 SER205 GLN206 LEU207 HIS208 GLN209 VAL210 ASN211 SER212 ASP213 LEU214 LEU215 GLY216 TRP217 TRP218 LEU219 CYS220 GLU221 ARG222 GLN223 LEU224 PRO225 SER226 GLY227 GLY228 LEU229 ASN230 GLY231 ARG232 PRO233 GLU234 LYS235 LEU236 PRO237 ASP238 VAL239 CYS240 TYR241 SER242 TRP243 TRP244 VAL245 LEU246 ALA247 SER248 LEU249 LYS250 ILE251 ILE252 GLY253 ARG254 LEU255 HIS256 TRP257 ILE258 ASP259 ARG260 GLU261 LYS262 LEU263 ARG264 SER265 PHE266 ILE267 LEU268 ALA269 CYS270 GLN271 ASP272 GLU273 GLU274 THR275 GLY276 GLY277 PHE278 ALA279 ASP280 ARG281 PRO282 GLY283 ASP284 MET285 VAL286 ASP287 PRO288 PHE289 HIS290 THR291 LEU292 PHE293 GLY294 ILE295 ALA296 GLY297 LEU298 SER299 LEU300 LEU301 GLY302 GLU303 GLU304 GLN305 ILE306 LYS307 PRO308 VAL309 SER310 PRO311 VAL312 PHE313 CYS314 MET315 PRO316 GLU317 GLU318 VAL319 LEU320 GLN321 ARG322 VAL323 ASN324 VAL325 GLN326 PRO327 GLU328 LEU329 VAL330 SER331
Unit 3 FME1 HIS2 GLY3 ARG4 LEU5 LYS6 VAL7 LYS8 THR9 SER10 GLU11 GLU12 GLN13 ALA14 GLU15 ALA16 LYS17 ARG18 LEU19 GLU20 ARG21 GLU22 GLN23 LYS24 LEU25 LYS26 LEU27 TYR28 GLN29 SER30 ALA31 THR32 GLN33 ALA34 VAL35 PHE36 GLN37 LYS38 ARG39 GLN40 ALA41 GLY42 GLU43 LEU44 ASP45 GLU46 SER47 VAL48 LEU49 GLU50 LEU51 THR52 SER53 GLN54 ILE55 LEU56 GLY57 ALA58 ASN59 PRO60 ASP61 PHE62 ALA63 THR64 LEU65 TRP66 ASN67 CYS68 ARG69 ARG70 GLU71 VAL72 LEU73 GLN74 HIS75 LEU76 GLU77 THR78 GLU79 LYS80 SER81 PRO82 GLU83 GLU84 SER85 ALA86 ALA87 LEU88 VAL89 LYS90 ALA91 GLU92 LEU93 GLY94 PHE95 LEU96 GLU97 SER98 CYS99 LEU100 ARG101 VAL102 ASN103 PRO104 LYS105 SER106 TYR107 GLY108 THR109 TRP110 HIS111 HIS112 ARG113 CYS114 TRP115 LEU116 LEU117 SER118 ARG119 LEU120 PRO121 GLU122 PRO123 ASN124 TRP125 ALA126 ARG127 GLU128 LEU129 GLU130 LEU131 CYS132 ALA133 ARG134 PHE135 LEU136 GLU137 ALA138 ASP139 GLU140 ARG141 ASN142 PHE143 HIS144 CYS145 TRP146 ASP147 TYR148 ARG149 ARG150 PHE151 VAL152 ALA153 ALA154 GLN155 ALA156 ALA157 VAL158 ALA159 PRO160 ALA161 GLU162 GLU163 LEU164 ALA165 PHE166 THR167 ASP168 SER169 LEU170 ILE171 THR172 ARG173 ASN174 PHE175 SER176 ASN177 TYR178 SER179 SER180 TRP181 HIS182 TYR183 ARG184 SER185 CYS186 LEU187 LEU188 PRO189 GLN190 LEU191 HIS192 PRO193 GLN194 PRO195 ASP196 SER197 GLY198 PRO199 GLN200 GLY201 ARG202 LEU203 PRO204 GLU205 ASN206 VAL207 LEU208 LEU209 LYS210 GLU211 LEU212 GLU213 LEU214 VAL215 GLN216 ASN217 ALA218 PHE219 PHE220 THR221 ASP222 PRO223 ASN224 ASP225 GLN226 SER227 ALA228 TRP229 PHE230 TYR231 HIS232 ARG233 TRP234 LEU235 LEU236 GLY237 ARG238 ALA239 GLU240 PRO241 HIS242 ASP243 VAL244 LEU245 CYS246 CYS247 VAL248 HIS249 VAL250 SER251 ARG252 GLU253 GLU254 ALA255 CYS256 LEU257 SER258 VAL259 CYS260 PHE261 SER262 ARG263 PRO264 LEU265 THR266 VAL267 GLY268 SER269 ARG270 MET271 GLY272 THR273 LEU274 LEU275 LEU276 MET277 VAL278 ASP279 GLU280 ALA281 PRO282 LEU283 SER284 VAL285 GLU286 TRP287 ARG288 THR289 PRO290 ASP291 GLY292 ARG293 ASN294 ARG295 PRO296 SER297 HIS298 VAL299 TRP300 LEU301 CYS302 ASP303 LEU304 PRO305 ALA306 ALA307 SER308 LEU309 ASN310 ASP311 GLN312 LEU313 PRO314 GLN315 HIS316 THR317 PHE318 ARG319 VAL320 ILE321 TRP322 THR323 GLY324 SER325 ASP326 SER327 GLN328 LYS329 GLU330 CYS331 VAL332 LEU333 LEU334 LYS335 ASP336 ARG337 PRO338 GLU339 CYS340 TRP341 CYS342 ARG343 ASP344 SER345 ALA346 THR347 ASP348 GLU349 GLN350 LEU351 PHE352 ARG353 CYS354 GLU355 LEU356 SER357 VAL358 GLU359 LYS360 SER361 THR362 VAL363 LEU364 GLN365 SER366 GLU367 LEU368 GLU369 SER370 CYS371 LYS372 GLU373 LEU374 GLN375 GLU376 LEU377 GLU378 PRO379 GLU380 ASN381 LYS382 TRP383 CYS384 LEU385 LEU386 THR387 ILE388 ILE389 LEU390 LEU391 MET392 ARG393 ALA394 LEU395 ASP396 PRO397 LEU398 LEU399 TYR400 GLU401 LYS402 GLU403 THR404 LEU405 GLN406 TYR407 PHE408 SER409 THR410 LEU411 LYS412 ALA413 VAL414 ASP415 PRO416 MET417 ARG418 ALA419 ALA420 TYR421 LEU422 ASP423 ASP424 LEU425 ARG426 SER427 LYS428 PHE429 LEU430 LEU431 GLU432 ASN433 SER434 VAL435 LEU436 LYS437 MET438 GLU439 TYR440 ALA441 ASP442 VAL443 ARG444 VAL445 LEU446 HIS447 LEU448 ALA449 HIS450 LYS451 ASP452 LEU453 THR454 VAL455 LEU456 CYS457 HIS458 LEU459 GLU460 GLN461 LEU462 LEU463 LEU464 VAL465 THR466 HIS467 LEU468 ASP469 LEU470 SER471 HIS472 ASN473 ARG474 LEU475 ARG476 ALA477 LEU478 PRO479 PRO480 ALA481 LEU482 ALA483 ALA484 LEU485 ARG486 CYS487 LEU488 GLU489 VAL490 LEU491 GLN492 ALA493 SER494 ASP495 ASN496 ALA497 LEU498 GLU499 ASN500 VAL501 ASP502 GLY503 VAL504 ALA505 ASN506 LEU507 PRO508 ARG509 LEU510 GLN511 GLU512 LEU513 LEU514 LEU515 CYS516 ASN517 ASN518 ARG519 LEU520 GLN521 GLN522 SER523 ALA524 ALA525 ILE526 GLN527 PRO528 LEU529 VAL530 SER531 CYS532 PRO533 ARG534 LEU535 VAL536 LEU537 LEU538 ASN539 LEU540 GLN541 GLY542 ASN543 SER544 LEU545 CYS546 GLN547 GLU548 GLU549 GLY550 ILE551 GLN552 GLU553 ARG554 LEU555 ALA556 GLU557 MET558 LEU559 PRO560 SER561 VAL562 SER563 SER564 ILE565 LEU566 THR567
Unit 4 THR3 GLN4 GLN5 LYS6 ASP7 VAL8 THR9 ILE10 LYS11 SER12 ASP13 ALA14 PRO15 ASP16 THR17 LEU18 LEU19 LEU20 GLU21 LYS22 HIS23 ALA24 ASP25 TYR26 ILE27 ALA28 SER29 TYR30 GLY31 SER32 LYS33 LYS34 ASP35 ASP36 TYR37 GLU38 TYR39 CYS40 MET41 SER42 GLU43 TYR44 LEU45 ARG46 MET47 SER48 GLY49 VAL50 TYR51 TRP52 GLY53 LEU54 THR55 VAL56 MET57 ASP58 LEU59 MET60 GLY61 GLN62 LEU63 HIS64 ARG65 MET66 ASN67 LYS68 GLU69 GLU70 ILE71 LEU72 VAL73 PHE74 ILE75 LYS76 SER77 CYS78 GLN79 HIS80 GLU81 CYS82 GLY83 GLY84 VAL85 SER86 ALA87 SER88 ILE89 GLY90 HIS91 ASP92 PRO93 HIS94 LEU95 LEU96 TYR97 THR98 LEU99 SER100 ALA101 VAL102 GLN103 ILE104 LEU105 THR106 LEU107 TYR108 ASP109 SER110 ILE111 HIS112 VAL113 ILE114 ASN115 VAL116 ASP117 LYS118 VAL119 VAL120 ALA121 TYR122 VAL123 GLN124 SER125 LEU126 GLN127 LYS128 GLU129 ASP130 GLY131 SER132 PHE133 ALA134 GLY135 ASP136 ILE137 TRP138 GLY139 GLU140 ILE141 ASP142 THR143 ARG144 PHE145 SER146 PHE147 CYS148 ALA149 VAL150 ALA151 THR152 LEU153 ALA154 LEU155 LEU156 GLY157 LYS158 LEU159 ASP160 ALA161 ILE162 ASN163 VAL164 GLU165 LYS166 ALA167 ILE168 GLU169 PHE170 VAL171 LEU172 SER173 CYS174 MET175 ASN176 PHE177 ASP178 GLY179 GLY180 PHE181 GLY182 CYS183 ARG184 PRO185 GLY186 SER187 GLU188 SER189 HIS190 ALA191 GLY192 GLN193 ILE194 TYR195 CYS196 CYS197 THR198 GLY199 PHE200 LEU201 ALA202 ILE203 THR204 SER205 GLN206 LEU207 HIS208 GLN209 VAL210 ASN211 SER212 ASP213 LEU214 LEU215 GLY216 TRP217 TRP218 LEU219 CYS220 GLU221 ARG222 GLN223 LEU224 PRO225 SER226 GLY227 GLY228 LEU229 ASN230 GLY231 ARG232 PRO233 GLU234 LYS235 LEU236 PRO237 ASP238 VAL239 CYS240 TYR241 SER242 TRP243 TRP244 VAL245 LEU246 ALA247 SER248 LEU249 LYS250 ILE251 ILE252 GLY253 ARG254 LEU255 HIS256 TRP257 ILE258 ASP259 ARG260 GLU261 LYS262 LEU263 ARG264 SER265 PHE266 ILE267 LEU268 ALA269 CYS270 GLN271 ASP272 GLU273 GLU274 THR275 GLY276 GLY277 PHE278 ALA279 ASP280 ARG281 PRO282 GLY283 ASP284 MET285 VAL286 ASP287 PRO288 PHE289 HIS290 THR291 LEU292 PHE293 GLY294 ILE295 ALA296 GLY297 LEU298 SER299 LEU300 LEU301 GLY302 GLU303 GLU304 GLN305 ILE306 LYS307 PRO308 VAL309 SER310 PRO311 VAL312 PHE313 CYS314 MET315 PRO316 GLU317 GLU318 VAL319 LEU320 GLN321 ARG322 VAL323 ASN324 VAL325 GLN326 PRO327 GLU328 LEU329 VAL330 SER331

Ligands
Unit 5 ZN900
Unit 6 ZN950

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany