1D9K - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF COMPLEX BETWEEN D10 TCR AND PMHC I-AK/C
• Keywords: T-CELL RECEPTOR, MHC CLASS II, D10, I-AK, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	1D9K	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	T-CELL RECEPTOR D10 (ALPHA CHAIN)	A	110	877	0
2	Protein	T-CELL RECEPTOR D10 (BETA CHAIN)	B	112	854	0
3	Protein	MHC I-AK A CHAIN (ALPHA CHAIN)	C	183	1485	0
4	Protein	MHC I-AK B CHAIN (BETA CHAIN)	D	188	1575	0
5	Protein	CONALBUMIN PEPTIDE	P	16	120	0
6	Protein	T-CELL RECEPTOR D10 (ALPHA CHAIN)	E	110	877	0
7	Protein	T-CELL RECEPTOR D10 (BETA CHAIN)	F	112	854	0
8	Protein	MHC I-AK A CHAIN (ALPHA CHAIN)	G	183	1485	0
9	Protein	MHC I-AK B CHAIN (BETA CHAIN)	H	188	1575	0
10	Protein	CONALBUMIN PEPTIDE	Q	16	120	0
11	Ligand		I	2	0	28
12	Ligand		J	2	0	28
13	Ligand		K	2	0	28
14	Ligand		L	2	0	28
15	Ligand	MHC I-AK A CHAIN (ALPHA CHAIN)	C	1	0	14
16	Ligand	MHC I-AK A CHAIN (ALPHA CHAIN)	G	1	0	14
total				1228	9822	140

Proteins

Unit 1	GLN 2 VAL 3 ARG 4 GLN 5 SER 6 PRO 7 GLN 8 SER 9 LEU 10 THR 11 VAL 12 TRP 13 GLU 14 GLY 15 GLU 16 THR 17 THR 18 ILE 19 LEU 20 ASN 21 CYS 22 SER 23 TYR 24 GLU 25 ASP 26 SER 27 THR 28 PHE 29 ASP 30 TYR 31 PHE 32 PRO 33 TRP 34 TYR 35 ARG 36 GLN 37 PHE 38 PRO 39 GLY 40 LYS 41 SER 42 PRO 43 ALA 44 LEU 45 LEU 46 ILE 47 ALA 48 ILE 49 SER 50 LEU 51 VAL 52 SER 53 ASN 54 LYS 55 LYS 56 GLU 57 ASP 58 GLY 59 ARG 61 PHE 62 THR 63 ILE 64 PHE 65 PHE 66 ASN 67 LYS 68 ARG 69 GLU 70 LYS 71 LYS 72 LEU 73 SER 74 LEU 75 HIS 76 ILE 77 THR 78 ASP 79 SER 80 GLN 81 PRO 82 GLY 83 ASP 84 SER 85 ALA 86 THR 87 TYR 88 PHE 89 CYS 90 ALA 91 ALA 92 THR 93 GLY 99 SER 100 PHE 101 ASN 102 LYS 103 LEU 104 THR 105 PHE 106 GLY 107 ALA 108 GLY 109 THR 110 ARG 111 LEU 112 ALA 113 VAL 114 SER 115 PRO 116 TYR 117
Unit 2	ALA 3 VAL 4 THR 5 GLN 6 SER 7 PRO 8 ARG 9 ASN 10 LYS 11 VAL 12 ALA 13 VAL 14 THR 15 GLY 16 GLY 17 LYS 18 VAL 19 THR 20 LEU 21 SER 22 CYS 23 ASN 24 GLN 25 THR 26 ASN 27 ASN 28 HIS 29 ASN 30 ASN 31 MET 32 TYR 33 TRP 34 TYR 35 ARG 36 GLN 37 ASP 38 THR 39 GLY 40 HIS 41 GLY 42 LEU 43 ARG 44 LEU 45 ILE 46 HIS 47 TYR 48 SER 49 TYR 50 GLY 51 ALA 52 GLY 53 SER 54 THR 55 GLU 56 LYS 57 GLY 58 ASP 59 ILE 60 PRO 61 ASP 62 GLY 63 TYR 65 LYS 66 ALA 67 SER 68 ARG 69 PRO 70 SER 71 GLN 72 GLU 73 ASN 74 PHE 75 SER 76 LEU 77 ILE 78 LEU 79 GLU 80 LEU 81 ALA 82 THR 83 PRO 84 SER 85 GLN 86 THR 87 SER 88 VAL 89 TYR 90 PHE 91 CYS 92 ALA 93 SER 94 GLY 95 GLY 96 GLN 97 GLY 98 ARG 99 ALA 104 GLU 105 GLN 106 PHE 107 PHE 108 GLY 109 PRO 110 GLY 111 THR 112 ARG 113 LEU 114 THR 115 VAL 116 LEU 116A GLY 116B SER 116C
Unit 3	ILE 1 GLU 2 ALA 3 ASP 4 HIS 5 VAL 6 GLY 7 SER 8 TYR 9 GLY 9A ILE 10 THR 11 VAL 12 TYR 13 GLN 14 SER 15 PRO 16 GLY 17 ASP 18 ILE 19 GLY 20 GLN 21 TYR 22 THR 23 PHE 24 GLU 25 PHE 26 ASP 27 GLY 28 ASP 29 GLU 30 LEU 31 PHE 32 TYR 33 VAL 34 ASP 35 LEU 36 ASP 37 LYS 38 LYS 39 GLU 40 THR 41 VAL 42 TRP 43 MET 44 LEU 45 PRO 46 GLU 47 PHE 48 ALA 49 GLN 50 LEU 51 ARG 52 ARG 53 PHE 54 GLU 55 PRO 56 GLN 57 GLY 58 GLY 59 LEU 60 GLN 61 ASN 62 ILE 63 ALA 64 THR 65 GLY 66 LYS 67 HIS 68 ASN 69 LEU 70 GLU 71 ILE 72 LEU 73 THR 74 LYS 75 ARG 76 SER 77 ASN 78 SER 79 THR 80 PRO 81 ALA 82 THR 83 ASN 84 GLU 85 ALA 86 PRO 87 GLN 88 ALA 89 THR 90 VAL 91 PHE 92 PRO 93 LYS 94 SER 95 PRO 96 VAL 97 LEU 98 LEU 99 GLY 100 GLN 101 PRO 102 ASN 103 THR 104 LEU 105 ILE 106 CYS 107 PHE 108 VAL 109 ASP 110 ASN 111 ILE 112 PHE 113 PRO 114 PRO 115 VAL 116 ILE 117 ASN 118 ILE 119 THR 120 TRP 121 LEU 122 ARG 123 ASN 124 SER 125 LYS 126 SER 127 VAL 128 THR 129 ASP 130 GLY 131 VAL 132 TYR 133 GLU 134 THR 135 SER 136 PHE 137 PHE 138 VAL 139 ASN 140 ARG 141 ASP 142 TYR 143 SER 144 PHE 145 HIS 146 LYS 147 LEU 148 SER 149 TYR 150 LEU 151 THR 152 PHE 153 ILE 154 PRO 155 SER 156 ASP 157 ASP 158 ASP 159 ILE 160 TYR 161 ASP 162 CYS 163 LYS 164 VAL 165 GLU 166 HIS 167 TRP 168 GLY 169 LEU 170 GLU 171 GLU 172 PRO 173 VAL 174 LEU 175 LYS 176 HIS 177 TRP 178 GLU 179 PRO 180 GLU 181 ILE 182
Unit 4	GLY 2 SER 3 GLU 4 ARG 5 HIS 6 PHE 7 VAL 8 HIS 9 GLN 10 PHE 11 GLN 12 PRO 13 PHE 14 CYS 15 TYR 16 PHE 17 THR 18 ASN 19 GLY 20 THR 21 GLN 22 ARG 23 ILE 24 ARG 25 LEU 26 VAL 27 ILE 28 ARG 29 TYR 30 ILE 31 TYR 32 ASN 33 ARG 34 GLU 35 GLU 36 TYR 37 VAL 38 ARG 39 PHE 40 ASP 41 SER 42 ASP 43 VAL 44 GLY 45 GLU 46 TYR 47 ARG 48 ALA 49 VAL 50 THR 51 GLU 52 LEU 53 GLY 54 ARG 55 PRO 56 ASP 57 ALA 58 GLU 59 TYR 60 TRP 61 ASN 62 LYS 63 GLN 64 TYR 67 LEU 68 GLU 69 ARG 70 THR 71 ARG 72 ALA 73 GLU 74 LEU 75 ASP 76 THR 77 VAL 78 CYS 79 ARG 80 HIS 81 ASN 82 TYR 83 GLU 84 LYS 84A THR 85 GLU 86 THR 87 PRO 88 THR 89 SER 90 LEU 91 ARG 92 ARG 93 LEU 94 GLU 95 GLN 96 PRO 97 SER 98 VAL 99 VAL 100 ILE 101 SER 102 LEU 103 SER 104 ARG 105 THR 106 GLU 107 ALA 108 LEU 109 ASN 110 HIS 111 HIS 112 ASN 113 THR 114 LEU 115 VAL 116 CYS 117 SER 118 VAL 119 THR 120 ASP 121 PHE 122 TYR 123 PRO 124 ALA 125 LYS 126 ILE 127 LYS 128 VAL 129 ARG 130 TRP 131 PHE 132 ARG 133 ASN 134 GLY 135 GLN 136 GLU 137 GLU 138 THR 139 VAL 140 GLY 141 VAL 142 SER 143 SER 144 THR 145 GLN 146 LEU 147 ILE 148 ARG 149 ASN 150 GLY 151 ASP 152 TRP 153 THR 154 PHE 155 GLN 156 VAL 157 LEU 158 VAL 159 MET 160 LEU 161 GLU 162 MET 163 THR 164 PRO 165 ARG 166 ARG 167 GLY 168 GLU 169 VAL 170 TYR 171 THR 172 CYS 173 HIS 174 VAL 175 GLU 176 HIS 177 PRO 178 SER 179 LEU 180 LYS 181 SER 182 PRO 183 ILE 184 THR 185 VAL 186 GLU 187 TRP 188 ARG 189 ALA 190
Unit 5	GLY 131 ASN 132 SER 133 HIS 134 ARG 135 GLY 136 ALA 137 ILE 138 GLU 139 TRP 140 GLU 141 GLY 142 ILE 143 GLU 144 SER 145 GLY 146
Unit 6	GLN 2 VAL 3 ARG 4 GLN 5 SER 6 PRO 7 GLN 8 SER 9 LEU 10 THR 11 VAL 12 TRP 13 GLU 14 GLY 15 GLU 16 THR 17 THR 18 ILE 19 LEU 20 ASN 21 CYS 22 SER 23 TYR 24 GLU 25 ASP 26 SER 27 THR 28 PHE 29 ASP 30 TYR 31 PHE 32 PRO 33 TRP 34 TYR 35 ARG 36 GLN 37 PHE 38 PRO 39 GLY 40 LYS 41 SER 42 PRO 43 ALA 44 LEU 45 LEU 46 ILE 47 ALA 48 ILE 49 SER 50 LEU 51 VAL 52 SER 53 ASN 54 LYS 55 LYS 56 GLU 57 ASP 58 GLY 59 ARG 61 PHE 62 THR 63 ILE 64 PHE 65 PHE 66 ASN 67 LYS 68 ARG 69 GLU 70 LYS 71 LYS 72 LEU 73 SER 74 LEU 75 HIS 76 ILE 77 THR 78 ASP 79 SER 80 GLN 81 PRO 82 GLY 83 ASP 84 SER 85 ALA 86 THR 87 TYR 88 PHE 89 CYS 90 ALA 91 ALA 92 THR 93 GLY 99 SER 100 PHE 101 ASN 102 LYS 103 LEU 104 THR 105 PHE 106 GLY 107 ALA 108 GLY 109 THR 110 ARG 111 LEU 112 ALA 113 VAL 114 SER 115 PRO 116 TYR 117
Unit 7	ALA 3 VAL 4 THR 5 GLN 6 SER 7 PRO 8 ARG 9 ASN 10 LYS 11 VAL 12 ALA 13 VAL 14 THR 15 GLY 16 GLY 17 LYS 18 VAL 19 THR 20 LEU 21 SER 22 CYS 23 ASN 24 GLN 25 THR 26 ASN 27 ASN 28 HIS 29 ASN 30 ASN 31 MET 32 TYR 33 TRP 34 TYR 35 ARG 36 GLN 37 ASP 38 THR 39 GLY 40 HIS 41 GLY 42 LEU 43 ARG 44 LEU 45 ILE 46 HIS 47 TYR 48 SER 49 TYR 50 GLY 51 ALA 52 GLY 53 SER 54 THR 55 GLU 56 LYS 57 GLY 58 ASP 59 ILE 60 PRO 61 ASP 62 GLY 63 TYR 65 LYS 66 ALA 67 SER 68 ARG 69 PRO 70 SER 71 GLN 72 GLU 73 ASN 74 PHE 75 SER 76 LEU 77 ILE 78 LEU 79 GLU 80 LEU 81 ALA 82 THR 83 PRO 84 SER 85 GLN 86 THR 87 SER 88 VAL 89 TYR 90 PHE 91 CYS 92 ALA 93 SER 94 GLY 95 GLY 96 GLN 97 GLY 98 ARG 99 ALA 104 GLU 105 GLN 106 PHE 107 PHE 108 GLY 109 PRO 110 GLY 111 THR 112 ARG 113 LEU 114 THR 115 VAL 116 LEU 116A GLY 116B SER 116C
Unit 8	ILE 1 GLU 2 ALA 3 ASP 4 HIS 5 VAL 6 GLY 7 SER 8 TYR 9 GLY 9A ILE 10 THR 11 VAL 12 TYR 13 GLN 14 SER 15 PRO 16 GLY 17 ASP 18 ILE 19 GLY 20 GLN 21 TYR 22 THR 23 PHE 24 GLU 25 PHE 26 ASP 27 GLY 28 ASP 29 GLU 30 LEU 31 PHE 32 TYR 33 VAL 34 ASP 35 LEU 36 ASP 37 LYS 38 LYS 39 GLU 40 THR 41 VAL 42 TRP 43 MET 44 LEU 45 PRO 46 GLU 47 PHE 48 ALA 49 GLN 50 LEU 51 ARG 52 ARG 53 PHE 54 GLU 55 PRO 56 GLN 57 GLY 58 GLY 59 LEU 60 GLN 61 ASN 62 ILE 63 ALA 64 THR 65 GLY 66 LYS 67 HIS 68 ASN 69 LEU 70 GLU 71 ILE 72 LEU 73 THR 74 LYS 75 ARG 76 SER 77 ASN 78 SER 79 THR 80 PRO 81 ALA 82 THR 83 ASN 84 GLU 85 ALA 86 PRO 87 GLN 88 ALA 89 THR 90 VAL 91 PHE 92 PRO 93 LYS 94 SER 95 PRO 96 VAL 97 LEU 98 LEU 99 GLY 100 GLN 101 PRO 102 ASN 103 THR 104 LEU 105 ILE 106 CYS 107 PHE 108 VAL 109 ASP 110 ASN 111 ILE 112 PHE 113 PRO 114 PRO 115 VAL 116 ILE 117 ASN 118 ILE 119 THR 120 TRP 121 LEU 122 ARG 123 ASN 124 SER 125 LYS 126 SER 127 VAL 128 THR 129 ASP 130 GLY 131 VAL 132 TYR 133 GLU 134 THR 135 SER 136 PHE 137 PHE 138 VAL 139 ASN 140 ARG 141 ASP 142 TYR 143 SER 144 PHE 145 HIS 146 LYS 147 LEU 148 SER 149 TYR 150 LEU 151 THR 152 PHE 153 ILE 154 PRO 155 SER 156 ASP 157 ASP 158 ASP 159 ILE 160 TYR 161 ASP 162 CYS 163 LYS 164 VAL 165 GLU 166 HIS 167 TRP 168 GLY 169 LEU 170 GLU 171 GLU 172 PRO 173 VAL 174 LEU 175 LYS 176 HIS 177 TRP 178 GLU 179 PRO 180 GLU 181 ILE 182
Unit 9	GLY 2 SER 3 GLU 4 ARG 5 HIS 6 PHE 7 VAL 8 HIS 9 GLN 10 PHE 11 GLN 12 PRO 13 PHE 14 CYS 15 TYR 16 PHE 17 THR 18 ASN 19 GLY 20 THR 21 GLN 22 ARG 23 ILE 24 ARG 25 LEU 26 VAL 27 ILE 28 ARG 29 TYR 30 ILE 31 TYR 32 ASN 33 ARG 34 GLU 35 GLU 36 TYR 37 VAL 38 ARG 39 PHE 40 ASP 41 SER 42 ASP 43 VAL 44 GLY 45 GLU 46 TYR 47 ARG 48 ALA 49 VAL 50 THR 51 GLU 52 LEU 53 GLY 54 ARG 55 PRO 56 ASP 57 ALA 58 GLU 59 TYR 60 TRP 61 ASN 62 LYS 63 GLN 64 TYR 67 LEU 68 GLU 69 ARG 70 THR 71 ARG 72 ALA 73 GLU 74 LEU 75 ASP 76 THR 77 VAL 78 CYS 79 ARG 80 HIS 81 ASN 82 TYR 83 GLU 84 LYS 84A THR 85 GLU 86 THR 87 PRO 88 THR 89 SER 90 LEU 91 ARG 92 ARG 93 LEU 94 GLU 95 GLN 96 PRO 97 SER 98 VAL 99 VAL 100 ILE 101 SER 102 LEU 103 SER 104 ARG 105 THR 106 GLU 107 ALA 108 LEU 109 ASN 110 HIS 111 HIS 112 ASN 113 THR 114 LEU 115 VAL 116 CYS 117 SER 118 VAL 119 THR 120 ASP 121 PHE 122 TYR 123 PRO 124 ALA 125 LYS 126 ILE 127 LYS 128 VAL 129 ARG 130 TRP 131 PHE 132 ARG 133 ASN 134 GLY 135 GLN 136 GLU 137 GLU 138 THR 139 VAL 140 GLY 141 VAL 142 SER 143 SER 144 THR 145 GLN 146 LEU 147 ILE 148 ARG 149 ASN 150 GLY 151 ASP 152 TRP 153 THR 154 PHE 155 GLN 156 VAL 157 LEU 158 VAL 159 MET 160 LEU 161 GLU 162 MET 163 THR 164 PRO 165 ARG 166 ARG 167 GLY 168 GLU 169 VAL 170 TYR 171 THR 172 CYS 173 HIS 174 VAL 175 GLU 176 HIS 177 PRO 178 SER 179 LEU 180 LYS 181 SER 182 PRO 183 ILE 184 THR 185 VAL 186 GLU 187 TRP 188 ARG 189 ALA 190
Unit 10	GLY 131 ASN 132 SER 133 HIS 134 ARG 135 GLY 136 ALA 137 ILE 138 GLU 139 TRP 140 GLU 141 GLY 142 ILE 143 GLU 144 SER 145 GLY 146

Ligands

Unit 11	NAG 1 NDG 2
Unit 12	NAG 1 NDG 2
Unit 13	NAG 1 NDG 2
Unit 14	NAG 1 NDG 2
Unit 15	NAG 201
Unit 16	NAG 201